Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.61800 * 2 1 4 4 O 1.20828 * 120.00119 * 239.77368 * 3 2 1 5 5 O 1.34229 * 120.00072 * 59.77644 * 3 2 1 6 6 C 1.45206 * 117.00098 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47053 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00080 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99598 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99640 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47099 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00231 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00370 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99844 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47288 * 59.99869 * 15 13 11 17 17 H 1.48492 * 109.47093 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47038 * 300.00131 * 15 13 11 19 19 C 1.53178 * 109.54524 * 239.77536 * 2 1 3 20 20 C 1.53093 * 109.16255 * 297.11741 * 19 2 1 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 2 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 C 1.53096 * 109.41898 * 298.84863 * 22 21 20 24 24 H 1.08995 * 109.47136 * 180.22581 * 1 2 3 25 25 H 1.08999 * 109.47065 * 300.22323 * 1 2 3 26 26 H 1.08999 * 109.47117 * 60.21975 * 1 2 3 27 27 H 1.08998 * 109.46751 * 300.00123 * 6 5 3 28 28 H 1.08998 * 109.46793 * 59.99689 * 6 5 3 29 29 H 0.96992 * 120.00489 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.47558 * 300.00164 * 10 9 7 31 31 H 1.09007 * 109.47259 * 59.99795 * 10 9 7 32 32 H 0.96998 * 120.00147 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.52619 * 177.21000 * 19 2 1 34 34 H 1.08997 * 109.57176 * 57.05194 * 19 2 1 35 35 H 1.09002 * 109.48198 * 62.37219 * 20 19 2 36 36 H 1.08999 * 109.48029 * 182.39833 * 20 19 2 37 37 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 38 38 H 1.08992 * 109.48518 * 58.83967 * 22 21 20 39 39 H 1.08999 * 109.52155 * 297.70346 * 23 22 21 40 40 H 1.09004 * 109.51758 * 177.51891 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7350 1.8117 -0.9041 5 8 1.7101 2.2482 1.0044 6 6 2.2325 3.6014 0.9385 7 6 1.7662 4.3791 2.1421 8 8 1.0625 3.8456 2.9733 9 7 2.1304 5.6678 2.2942 10 6 1.6766 6.4239 3.4640 11 6 2.2189 7.8283 3.3956 12 1 2.8391 8.1278 2.5638 13 6 1.9232 8.7309 4.3951 14 7 1.1683 8.3662 5.4083 15 14 2.5948 10.4720 4.3099 16 1 2.1038 11.1321 3.0736 17 1 2.1360 11.2381 5.4964 18 1 4.0791 10.4296 4.2924 19 6 2.0424 -0.7267 -1.2473 20 6 1.5894 -2.1882 -1.1991 21 8 2.0735 -2.7965 -0.0001 22 6 1.5893 -2.1882 1.1992 23 6 2.0424 -0.7266 1.2474 24 1 -0.3633 -1.0276 0.0041 25 1 -0.3633 0.5173 0.8880 26 1 -0.3633 0.5104 -0.8919 27 1 3.3220 3.5700 0.9264 28 1 1.8729 4.0858 0.0307 29 1 2.6929 6.0945 1.6292 30 1 0.5871 6.4550 3.4764 31 1 2.0366 5.9396 4.3718 32 1 0.9606 9.0011 6.1116 33 1 3.1313 -0.6835 -1.2725 34 1 1.6382 -0.2493 -2.1399 35 1 0.5004 -2.2319 -1.2148 36 1 1.9871 -2.7207 -2.0630 37 1 1.9872 -2.7207 2.0631 38 1 0.5004 -2.2319 1.2151 39 1 3.1312 -0.6834 1.2726 40 1 1.6372 -0.2489 2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726840058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = -204.802087 kcal Electronic energy + Delta-G solvation = -22584.958423 eV Core-core repulsion = 18977.547094 eV Total energy + Delta-G solvation = -3607.411330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22464 -40.72615 -39.99785 -37.65933 -36.20516 -35.85166 -34.43496 -32.16926 -30.90620 -29.09870 -28.50702 -26.39423 -24.73017 -24.54694 -22.80146 -21.67993 -20.20207 -19.23314 -18.72505 -18.14072 -17.86534 -17.34566 -17.03099 -16.91511 -16.40863 -16.26827 -15.91337 -15.67893 -15.43450 -14.91329 -14.69717 -14.28066 -14.14831 -13.94394 -13.62687 -13.41936 -13.22309 -13.00283 -12.97209 -12.69581 -12.38435 -12.36463 -12.25500 -11.96232 -11.75031 -11.62243 -11.53994 -11.29217 -10.94115 -10.82094 -10.48170 -9.95462 -8.30833 -6.47630 0.97741 1.18829 1.43722 1.46780 1.52052 1.55347 2.31701 2.52011 2.96102 3.04322 3.33077 3.49121 3.58640 3.67695 3.88446 3.95344 3.99937 4.01215 4.23419 4.30057 4.48563 4.59965 4.65657 4.73415 4.78986 4.84114 4.94552 5.02824 5.06404 5.07785 5.20119 5.21533 5.30440 5.39534 5.60827 5.80492 6.23760 6.49496 6.60934 6.75497 7.18362 7.33040 8.81053 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.046043 B = 0.002724 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.986469 B =10278.347041 C =10586.200896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.469 3.531 4 O -0.526 6.526 5 O -0.341 6.341 6 C 0.058 3.942 7 C 0.501 3.499 8 O -0.581 6.581 9 N -0.699 5.699 10 C 0.267 3.733 11 C -0.559 4.559 12 H 0.085 0.915 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.132 4.132 20 C 0.061 3.939 21 O -0.398 6.398 22 C 0.063 3.937 23 C -0.146 4.146 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.412 0.588 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.270 0.730 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -19.430 -14.659 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 C 0.313 3.687 4 O -0.415 6.415 5 O -0.257 6.257 6 C -0.019 4.019 7 C 0.286 3.714 8 O -0.461 6.461 9 N -0.350 5.350 10 C 0.145 3.855 11 C -0.597 4.597 12 H 0.103 0.897 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.170 4.170 20 C -0.015 4.015 21 O -0.317 6.317 22 C -0.013 4.013 23 C -0.184 4.184 24 H 0.117 0.883 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.248 0.752 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.837 -19.738 -14.151 24.301 hybrid contribution 0.390 1.752 0.165 1.803 sum 1.227 -17.986 -13.986 22.817 Atomic orbital electron populations 1.22021 0.89940 1.04843 1.03570 1.20723 0.99184 0.85707 0.99483 1.24373 0.76881 0.89077 0.78334 1.90639 1.36438 1.77600 1.36819 1.86567 1.69111 1.22606 1.47388 1.22746 1.01491 0.80244 0.97449 1.20630 0.80681 0.82713 0.87353 1.90679 1.39495 1.70099 1.45855 1.46051 1.51904 1.10514 1.26571 1.18623 0.93573 0.90483 0.82822 1.21579 1.33304 0.95557 1.09220 0.89659 1.26044 0.94869 1.04240 0.94299 1.70117 1.37566 1.37666 1.11445 0.85212 0.78975 0.77152 0.77922 1.18664 1.21106 1.18710 1.22162 1.02015 0.96900 0.95883 1.22797 0.99827 0.90903 0.87993 1.87944 1.72488 1.56785 1.14522 1.22723 0.99799 0.90716 0.88045 1.22288 1.01864 0.97790 0.96465 0.88348 0.91675 0.91197 0.86181 0.85972 0.75174 0.98902 0.98953 0.92157 0.91461 0.89284 0.90712 0.86746 0.87094 0.90728 0.91382 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 7.87 71.98 0.57 -1.74 16 2 C -0.05 -0.96 0.72 -52.81 -0.04 -0.99 16 3 C 0.47 12.31 6.56 71.23 0.47 12.77 16 4 O -0.53 -15.38 15.72 21.96 0.35 -15.04 16 5 O -0.34 -10.42 9.59 -45.05 -0.43 -10.85 16 6 C 0.06 1.68 5.94 71.24 0.42 2.10 16 7 C 0.50 19.99 7.91 87.66 0.69 20.68 16 8 O -0.58 -28.88 16.50 15.80 0.26 -28.62 16 9 N -0.70 -28.79 5.55 -466.80 -2.59 -31.38 16 10 C 0.27 14.37 5.43 85.63 0.46 14.84 16 11 C -0.56 -29.80 9.28 25.60 0.24 -29.56 16 12 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 13 C 0.01 0.30 5.46 84.66 0.46 0.76 16 14 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 15 Si 0.98 41.68 29.54 68.60 2.03 43.71 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 C -0.13 -2.14 4.23 30.68 0.13 -2.01 16 20 C 0.06 0.75 6.57 72.01 0.47 1.22 16 21 O -0.40 -6.61 10.77 -148.98 -1.60 -8.21 16 22 C 0.06 0.89 6.57 72.01 0.47 1.36 16 23 C -0.15 -2.66 4.86 30.69 0.15 -2.51 16 24 H 0.10 1.04 5.01 -2.39 -0.01 1.03 16 25 H 0.06 1.23 8.11 -2.39 -0.02 1.22 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 28 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 29 H 0.41 13.70 8.32 -92.71 -0.77 12.92 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.07 1.30 8.02 -2.39 -0.02 1.28 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 0.66 6.61 -2.39 -0.02 0.64 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 0.81 6.60 -2.39 -0.02 0.79 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.71 333.63 3.07 -70.64 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.28 Total: 17.87 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 4.50 Total: 16.92 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.31 Total: -86.40 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.43 Total: -62.72 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -73.71 3.07 -70.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726840058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.167 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds