Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 120.39993 * 2 1 4 4 C 1.39660 * 118.33325 * 179.97438 * 3 2 1 5 5 N 1.38526 * 120.53665 * 180.27917 * 4 3 2 6 6 C 1.40557 * 120.00216 * 174.44405 * 5 4 3 7 7 C 1.40670 * 126.08310 * 6.47907 * 6 5 4 8 8 N 1.30908 * 108.39467 * 180.02562 * 7 6 5 9 9 N 1.40069 * 108.41131 * 359.97438 * 8 7 6 10 10 C 1.37306 * 126.07367 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00002 * 179.97438 * 10 9 8 12 12 C 1.38981 * 120.00257 * 359.97438 * 10 9 8 13 13 N 1.31301 * 119.99652 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00379 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47233 * 59.99909 * 14 12 10 16 16 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46901 * 300.00045 * 14 12 10 18 18 C 1.35682 * 126.08374 * 186.17845 * 6 5 4 19 19 N 1.33031 * 118.92707 * 0.02562 * 4 3 2 20 20 C 1.31738 * 120.68396 * 0.02562 * 19 4 3 21 21 C 1.50699 * 119.07906 * 180.02562 * 20 19 4 22 22 C 1.53000 * 117.49695 * 188.74458 * 21 20 19 23 23 C 1.53001 * 117.50150 * 120.08464 * 21 20 19 24 24 N 1.31794 * 121.84097 * 359.97438 * 20 19 4 25 25 H 1.09004 * 109.46611 * 270.01961 * 1 2 3 26 26 H 1.08997 * 109.47241 * 30.01142 * 1 2 3 27 27 H 1.08997 * 109.47371 * 150.02210 * 1 2 3 28 28 H 1.07995 * 120.83620 * 359.97438 * 3 2 1 29 29 H 0.97006 * 120.00325 * 354.43826 * 5 4 3 30 30 H 1.08007 * 125.80010 * 0.02562 * 7 6 5 31 31 H 0.96994 * 120.00138 * 179.97438 * 13 12 10 32 32 H 1.08003 * 126.24654 * 359.97438 * 18 6 5 33 33 H 1.09002 * 115.55047 * 334.41319 * 21 20 19 34 34 H 1.08993 * 117.50024 * 0.02562 * 22 21 20 35 35 H 1.09007 * 117.49800 * 145.01847 * 22 21 20 36 36 H 1.08992 * 117.50170 * 214.97356 * 23 21 20 37 37 H 1.09004 * 117.49819 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6016 1.1409 0.0005 5 7 4.3480 2.3078 0.0064 6 6 5.7472 2.2466 0.1247 7 6 6.5290 1.0771 0.1162 8 7 7.7855 1.4193 0.2492 9 7 7.8561 2.8148 0.3469 10 6 9.0010 3.5579 0.4958 11 1 8.9415 4.6343 0.5608 12 6 10.2366 2.9251 0.5630 13 7 10.3090 1.6165 0.4835 14 14 11.7941 3.9360 0.7663 15 1 11.7193 4.7117 2.0304 16 1 12.9700 3.0302 0.8097 17 1 11.9312 4.8699 -0.3802 18 6 6.5847 3.3053 0.2618 19 7 4.2026 -0.0459 0.0005 20 6 3.4957 -1.1575 -0.0005 21 6 4.2139 -2.4823 0.0001 22 6 3.3717 -3.7426 -0.2075 23 6 3.9513 -3.4279 1.1739 24 7 2.1778 -1.1434 -0.0011 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6862 2.1379 -0.0004 29 1 3.9050 3.1674 -0.0713 30 1 6.1559 0.0685 0.0169 31 1 11.1712 1.1747 0.5299 32 1 6.2978 4.3458 0.2993 33 1 5.2183 -2.4728 -0.4234 34 1 2.2981 -3.6135 -0.3449 35 1 3.8220 -4.5624 -0.7672 36 1 4.7825 -4.0407 1.5223 37 1 3.2592 -3.0915 1.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734835030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = 164.575718 kcal Electronic energy + Delta-G solvation = -21390.896117 eV Core-core repulsion = 18171.396633 eV Total energy + Delta-G solvation = -3219.499484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75222 -39.41456 -37.06949 -35.68909 -33.51631 -33.19809 -30.84216 -30.19690 -28.50519 -27.09644 -25.03556 -24.62604 -22.31963 -21.89817 -21.11460 -20.17583 -19.57382 -17.76597 -17.11393 -16.20268 -15.56933 -15.49335 -15.09863 -14.92051 -14.74913 -14.14812 -13.74183 -13.52926 -13.27520 -12.96916 -12.77423 -12.27901 -11.89292 -11.78244 -11.65303 -11.37700 -11.30686 -11.16022 -10.93975 -10.55716 -10.45121 -10.36982 -10.15433 -9.57423 -9.20684 -8.81456 -8.56278 -8.51778 -8.01520 -6.55367 -6.51407 -4.20180 1.34842 1.71680 2.97631 3.04517 3.08479 3.46726 3.56850 3.82178 3.86188 4.17350 4.29752 4.46536 4.53738 4.80736 5.02601 5.05016 5.07252 5.19741 5.35841 5.37990 5.45699 5.54229 5.72264 5.76835 5.84529 5.98195 6.02283 6.25305 6.27789 6.35693 6.40794 6.71365 6.91624 6.98966 7.20722 7.36331 7.74156 7.92622 8.13934 8.32590 8.70076 8.81342 9.38916 9.69125 10.40672 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.003936 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.632744 B = 7112.550494 C = 8171.605542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.198 3.802 3 C -0.311 4.311 4 C 0.443 3.557 5 N -0.599 5.599 6 C -0.058 4.058 7 C -0.030 4.030 8 N -0.262 5.262 9 N -0.144 5.144 10 C -0.324 4.324 11 H 0.115 0.885 12 C 0.047 3.953 13 N -0.770 5.770 14 Si 0.934 3.066 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.267 1.267 18 C -0.087 4.087 19 N -0.557 5.557 20 C 0.392 3.608 21 C -0.097 4.097 22 C -0.155 4.155 23 C -0.156 4.156 24 N -0.574 5.574 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.409 0.591 30 H 0.187 0.813 31 H 0.275 0.725 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -3.251 -0.494 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.056 3.944 3 C -0.340 4.340 4 C 0.198 3.802 5 N -0.219 5.219 6 C -0.164 4.164 7 C -0.206 4.206 8 N -0.092 5.092 9 N 0.089 4.911 10 C -0.456 4.456 11 H 0.132 0.868 12 C -0.170 4.170 13 N -0.397 5.397 14 Si 0.758 3.242 15 H -0.192 1.192 16 H -0.201 1.201 17 H -0.192 1.192 18 C -0.238 4.238 19 N -0.282 5.282 20 C 0.123 3.877 21 C -0.117 4.117 22 C -0.192 4.192 23 C -0.194 4.194 24 N -0.296 5.296 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.151 0.849 29 H 0.245 0.755 30 H 0.203 0.797 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.843 -4.628 -0.399 12.722 hybrid contribution -0.695 2.299 0.013 2.402 sum -12.539 -2.329 -0.386 12.759 Atomic orbital electron populations 1.20669 0.88710 1.03298 1.02997 1.21135 0.96595 0.87692 0.88937 1.21706 0.93294 1.00436 1.18571 1.18375 0.87447 0.86681 0.87727 1.41104 1.04446 1.04366 1.71953 1.17315 0.81174 0.94660 1.23260 1.24418 0.90016 0.99028 1.07165 1.78250 1.16507 0.89065 1.25382 1.44540 1.03264 1.04420 1.38850 1.19809 0.82041 0.91126 1.52613 0.86788 1.25619 0.99860 0.95962 0.95580 1.70206 1.26255 1.07848 1.35349 0.85908 0.79562 0.79286 0.79466 1.19192 1.20114 1.19194 1.21211 0.85679 0.96939 1.19968 1.67842 1.39795 0.97158 1.23406 1.21762 0.85886 0.92156 0.87855 1.20621 0.99895 0.85440 1.05785 1.22978 1.00679 0.96631 0.98954 1.22932 1.03265 1.01439 0.91753 1.67879 1.09212 1.29686 1.22827 0.90327 0.90747 0.90410 0.84864 0.75493 0.79673 0.91452 0.83898 0.85381 0.87365 0.88596 0.88163 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.21 36.01 0.37 -0.59 16 2 C 0.20 2.82 6.82 -82.32 -0.56 2.26 16 3 C -0.31 -4.60 9.72 -39.10 -0.38 -4.98 16 4 C 0.44 8.11 7.48 -154.74 -1.16 6.96 16 5 N -0.60 -11.09 5.60 -9.97 -0.06 -11.15 16 6 C -0.06 -1.34 6.91 -83.85 -0.58 -1.92 16 7 C -0.03 -0.77 10.86 -17.03 -0.18 -0.95 16 8 N -0.26 -7.56 10.40 30.81 0.32 -7.24 16 9 N -0.14 -3.96 3.74 -11.40 -0.04 -4.00 16 10 C -0.32 -8.62 10.25 -14.82 -0.15 -8.77 16 11 H 0.11 2.71 7.83 -52.49 -0.41 2.30 16 12 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 13 N -0.77 -21.47 11.81 55.49 0.66 -20.81 16 14 Si 0.93 18.97 29.55 -169.99 -5.02 13.94 16 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 C -0.09 -2.07 11.50 -16.37 -0.19 -2.26 16 19 N -0.56 -11.00 6.57 -9.95 -0.07 -11.06 16 20 C 0.39 6.85 7.31 -157.24 -1.15 5.70 16 21 C -0.10 -1.44 6.23 -91.77 -0.57 -2.02 16 22 C -0.15 -1.82 10.01 -26.69 -0.27 -2.09 16 23 C -0.16 -1.93 10.24 -26.69 -0.27 -2.21 16 24 N -0.57 -9.17 9.28 -7.07 -0.07 -9.24 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.41 6.04 8.84 -40.82 -0.36 5.68 16 30 H 0.19 4.60 5.65 -52.48 -0.30 4.31 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 33 H 0.13 1.93 8.14 -51.93 -0.42 1.50 16 34 H 0.11 1.32 7.54 -51.93 -0.39 0.93 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -32.69 322.53 -9.01 -41.69 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.40 Total: 12.75 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -5.19 Total: -9.74 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.75 Total: -63.50 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.69 -9.01 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734835030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.270 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds