Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 120.39993 * 2 1 4 4 C 1.39660 * 118.33325 * 179.97438 * 3 2 1 5 5 N 1.38526 * 120.53665 * 180.27917 * 4 3 2 6 6 C 1.40557 * 120.00216 * 174.44405 * 5 4 3 7 7 C 1.40670 * 126.08310 * 6.47907 * 6 5 4 8 8 N 1.30908 * 108.39467 * 180.02562 * 7 6 5 9 9 N 1.40069 * 108.41131 * 359.97438 * 8 7 6 10 10 C 1.37306 * 126.07367 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00002 * 179.97438 * 10 9 8 12 12 C 1.38981 * 120.00257 * 359.97438 * 10 9 8 13 13 N 1.31301 * 119.99652 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00379 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47233 * 59.99909 * 14 12 10 16 16 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46901 * 300.00045 * 14 12 10 18 18 C 1.35682 * 126.08374 * 186.17845 * 6 5 4 19 19 N 1.33031 * 118.92707 * 0.02562 * 4 3 2 20 20 C 1.31738 * 120.68396 * 0.02562 * 19 4 3 21 21 C 1.50699 * 119.07906 * 180.02562 * 20 19 4 22 22 C 1.53000 * 117.49695 * 188.74458 * 21 20 19 23 23 C 1.53001 * 117.50150 * 120.08464 * 21 20 19 24 24 N 1.31794 * 121.84097 * 359.97438 * 20 19 4 25 25 H 1.09004 * 109.46611 * 270.01961 * 1 2 3 26 26 H 1.08997 * 109.47241 * 30.01142 * 1 2 3 27 27 H 1.08997 * 109.47371 * 150.02210 * 1 2 3 28 28 H 1.07995 * 120.83620 * 359.97438 * 3 2 1 29 29 H 0.97006 * 120.00325 * 354.43826 * 5 4 3 30 30 H 1.08007 * 125.80010 * 0.02562 * 7 6 5 31 31 H 0.96994 * 120.00138 * 179.97438 * 13 12 10 32 32 H 1.08003 * 126.24654 * 359.97438 * 18 6 5 33 33 H 1.09002 * 115.55047 * 334.41319 * 21 20 19 34 34 H 1.08993 * 117.50024 * 0.02562 * 22 21 20 35 35 H 1.09007 * 117.49800 * 145.01847 * 22 21 20 36 36 H 1.08992 * 117.50170 * 214.97356 * 23 21 20 37 37 H 1.09004 * 117.49819 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6016 1.1409 0.0005 5 7 4.3480 2.3078 0.0064 6 6 5.7472 2.2466 0.1247 7 6 6.5290 1.0771 0.1162 8 7 7.7855 1.4193 0.2492 9 7 7.8561 2.8148 0.3469 10 6 9.0010 3.5579 0.4958 11 1 8.9415 4.6343 0.5608 12 6 10.2366 2.9251 0.5630 13 7 10.3090 1.6165 0.4835 14 14 11.7941 3.9360 0.7663 15 1 11.7193 4.7117 2.0304 16 1 12.9700 3.0302 0.8097 17 1 11.9312 4.8699 -0.3802 18 6 6.5847 3.3053 0.2618 19 7 4.2026 -0.0459 0.0005 20 6 3.4957 -1.1575 -0.0005 21 6 4.2139 -2.4823 0.0001 22 6 3.3717 -3.7426 -0.2075 23 6 3.9513 -3.4279 1.1739 24 7 2.1778 -1.1434 -0.0011 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6862 2.1379 -0.0004 29 1 3.9050 3.1674 -0.0713 30 1 6.1559 0.0685 0.0169 31 1 11.1712 1.1747 0.5299 32 1 6.2978 4.3458 0.2993 33 1 5.2183 -2.4728 -0.4234 34 1 2.2981 -3.6135 -0.3449 35 1 3.8220 -4.5624 -0.7672 36 1 4.7825 -4.0407 1.5223 37 1 3.2592 -3.0915 1.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734835030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = 145.514364 kcal Electronic energy + Delta-G solvation = -21391.722679 eV Core-core repulsion = 18171.396633 eV Total energy + Delta-G solvation = -3220.326047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.08822 -41.25425 -38.23774 -37.06517 -35.26574 -34.55727 -32.36207 -32.00240 -29.80167 -28.63911 -26.66980 -26.07792 -23.48118 -23.10569 -22.67613 -21.63208 -21.34276 -19.52448 -18.47849 -17.66143 -17.37210 -16.77534 -16.39000 -16.31063 -16.14114 -15.42134 -15.32411 -15.17480 -14.85076 -14.05734 -14.01519 -13.47211 -13.25162 -13.17846 -13.08621 -12.96835 -12.75217 -12.69627 -12.32610 -12.13864 -11.57199 -11.50883 -11.30202 -11.25437 -10.78259 -10.65057 -10.09120 -9.91598 -9.87858 -8.45421 -8.24102 -6.19721 0.11927 0.41261 1.33783 1.38937 1.55096 1.79261 2.01990 2.23572 2.43003 2.74022 2.84665 3.07395 3.09421 3.22086 3.41269 3.91413 3.96466 4.17684 4.21674 4.32370 4.45408 4.46592 4.61215 4.67645 4.80262 4.83682 4.89987 4.99732 5.00900 5.11850 5.16508 5.20316 5.32637 5.36145 5.56837 5.90483 5.98981 6.21073 6.48268 6.73189 6.89942 7.45857 7.51683 7.72704 8.53828 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.003936 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.632744 B = 7112.550494 C = 8171.605542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.191 3.809 3 C -0.299 4.299 4 C 0.419 3.581 5 N -0.600 5.600 6 C -0.039 4.039 7 C -0.052 4.052 8 N -0.310 5.310 9 N -0.171 5.171 10 C -0.358 4.358 11 H 0.136 0.864 12 C -0.005 4.005 13 N -0.824 5.824 14 Si 1.018 2.982 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.255 1.255 18 C -0.089 4.089 19 N -0.597 5.597 20 C 0.377 3.623 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.147 4.147 24 N -0.572 5.572 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.427 0.573 30 H 0.187 0.813 31 H 0.276 0.724 32 H 0.180 0.820 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.099 -2.244 -0.408 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 C -0.327 4.327 4 C 0.176 3.824 5 N -0.225 5.225 6 C -0.146 4.146 7 C -0.229 4.229 8 N -0.142 5.142 9 N 0.060 4.940 10 C -0.489 4.489 11 H 0.153 0.847 12 C -0.216 4.216 13 N -0.452 5.452 14 Si 0.837 3.163 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.179 1.179 18 C -0.240 4.240 19 N -0.322 5.322 20 C 0.108 3.892 21 C -0.151 4.151 22 C -0.166 4.166 23 C -0.185 4.185 24 N -0.294 5.294 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.189 0.811 29 H 0.266 0.734 30 H 0.203 0.797 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.126 -3.625 -0.319 14.587 hybrid contribution -0.315 1.877 -0.032 1.904 sum -14.441 -1.747 -0.350 14.551 Atomic orbital electron populations 1.20801 0.84896 1.04914 1.04471 1.22025 0.98926 0.86943 0.87254 1.22078 0.91597 1.02439 1.16604 1.18827 0.88977 0.86234 0.88374 1.40935 1.02420 1.05585 1.73528 1.17366 0.83404 0.93326 1.20520 1.24592 0.90057 1.00116 1.08091 1.78130 1.18248 0.90735 1.27048 1.44800 1.04648 1.04066 1.40507 1.20515 0.82574 0.92300 1.53479 0.84653 1.26827 1.03441 0.97028 0.94346 1.70389 1.27147 1.10174 1.37459 0.84675 0.74182 0.77407 0.80065 1.17891 1.20122 1.17867 1.21888 0.84736 0.98786 1.18597 1.67742 1.41533 0.98424 1.24547 1.22171 0.86676 0.92347 0.87968 1.20709 1.00002 0.85896 1.08485 1.23045 1.00219 0.95077 0.98248 1.22999 1.03596 1.00332 0.91616 1.67995 1.08430 1.30700 1.22240 0.88669 0.88120 0.89864 0.81129 0.73376 0.79678 0.91448 0.80246 0.86780 0.87429 0.86275 0.86638 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 10.21 71.24 0.73 -0.69 16 2 C 0.19 4.93 6.82 42.42 0.29 5.22 16 3 C -0.30 -8.09 9.72 22.58 0.22 -7.87 16 4 C 0.42 15.10 7.48 133.16 1.00 16.10 16 5 N -0.60 -21.80 5.60 -185.46 -1.04 -22.84 16 6 C -0.04 -1.85 6.91 37.74 0.26 -1.59 16 7 C -0.05 -2.83 10.86 85.42 0.93 -1.90 16 8 N -0.31 -18.83 10.40 -56.45 -0.59 -19.42 16 9 N -0.17 -9.72 3.74 -189.99 -0.71 -10.43 16 10 C -0.36 -19.40 10.25 84.01 0.86 -18.54 16 11 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 12 C 0.00 -0.26 5.50 84.95 0.47 0.21 16 13 N -0.82 -47.97 11.81 21.66 0.26 -47.71 16 14 Si 1.02 39.21 29.55 68.60 2.03 41.24 16 15 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 16 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 17 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 18 C -0.09 -4.28 11.50 83.37 0.96 -3.32 16 19 N -0.60 -24.09 6.57 -185.40 -1.22 -25.31 16 20 C 0.38 13.25 7.31 138.77 1.01 14.27 16 21 C -0.13 -3.96 6.23 -11.54 -0.07 -4.03 16 22 C -0.13 -2.86 10.01 30.62 0.31 -2.56 16 23 C -0.15 -3.58 10.24 30.62 0.31 -3.27 16 24 N -0.57 -17.55 9.28 -176.28 -1.64 -19.19 16 25 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.43 11.82 8.84 -92.70 -0.82 11.00 16 30 H 0.19 9.82 5.65 -2.91 -0.02 9.80 16 31 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.18 6.94 8.06 -2.91 -0.02 6.92 16 33 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.11 2.43 7.54 -2.39 -0.02 2.41 16 35 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -75.56 322.53 4.65 -70.90 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: 0.29 Total: 40.73 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 7.27 Total: -7.97 kcal Atomic # 7 Polarization: -139.96 SS G_CDS: -4.93 Total: -144.90 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -75.56 4.65 -70.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734835030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.417 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds