Wall clock time and date at job start Tue Mar 31 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 C 1.53001 * 109.47370 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47361 * 179.97438 * 4 3 2 6 6 N 1.40087 * 126.03713 * 269.95992 * 5 4 3 7 7 C 1.30835 * 108.23423 * 179.75087 * 6 5 4 8 8 C 1.50700 * 125.88738 * 180.25172 * 7 6 5 9 9 C 1.39852 * 108.22227 * 0.43950 * 7 6 5 10 10 C 1.50704 * 126.05178 * 179.81506 * 9 7 6 11 11 N 1.46898 * 109.47041 * 269.71656 * 10 9 7 12 12 C 1.46906 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47140 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99839 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99833 * 17 15 13 21 21 C 1.34985 * 126.03846 * 89.99819 * 5 4 3 22 22 Cl 1.73600 * 126.13817 * 359.94162 * 21 5 4 23 23 H 1.08994 * 109.47115 * 300.00337 * 1 2 3 24 24 H 1.08998 * 109.46769 * 60.00061 * 1 2 3 25 25 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46808 * 239.99460 * 2 1 3 27 27 H 1.08998 * 109.46769 * 119.99939 * 2 1 3 28 28 H 1.08999 * 109.47206 * 59.99284 * 3 2 1 29 29 H 1.09003 * 109.47059 * 300.00208 * 3 2 1 30 30 H 1.09001 * 109.46808 * 59.99460 * 4 3 2 31 31 H 1.08998 * 109.46769 * 299.99939 * 4 3 2 32 32 H 1.09004 * 109.47648 * 270.22164 * 8 7 6 33 33 H 1.09006 * 109.47210 * 30.21949 * 8 7 6 34 34 H 1.09001 * 109.47057 * 150.21291 * 8 7 6 35 35 H 1.08997 * 109.46924 * 149.71567 * 10 9 7 36 36 H 1.08995 * 109.46962 * 29.71721 * 10 9 7 37 37 H 1.00901 * 111.00121 * 56.04537 * 11 10 9 38 38 H 1.09004 * 109.47040 * 299.99934 * 12 11 10 39 39 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 40 40 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 7 4.3334 3.6000 -1.1344 7 6 4.7435 4.7764 -0.7349 8 6 5.1416 5.9233 -1.6278 9 6 4.7528 4.7846 0.6635 10 6 5.1618 5.9396 1.5410 11 7 6.6004 5.8529 1.8256 12 6 7.0360 6.9656 2.6801 13 6 8.5134 6.8428 2.9505 14 1 9.0728 6.0201 2.5301 15 6 9.1508 7.7800 3.7356 16 7 8.4695 8.7815 4.2480 17 14 10.9823 7.6281 4.0702 18 1 11.5126 6.4229 3.3836 19 1 11.6803 8.8359 3.5609 20 1 11.2097 7.5046 5.5325 21 6 4.3236 3.5726 1.0899 22 17 4.1458 3.0726 2.7428 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9285 0.8891 32 1 6.2074 5.8598 -1.8476 33 1 4.5753 5.8732 -2.5579 34 1 4.9301 6.8664 -1.1240 35 1 4.6034 5.9009 2.4762 36 1 4.9487 6.8780 1.0291 37 1 7.1368 5.8218 0.9716 38 1 6.8359 7.9110 2.1757 39 1 6.4905 6.9345 3.6233 40 1 8.9179 9.4406 4.8006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743714598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:50 Heat of formation + Delta-G solvation = 46.783321 kcal Electronic energy + Delta-G solvation = -19927.090910 eV Core-core repulsion = 16803.591058 eV Total energy + Delta-G solvation = -3123.499852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26685 -36.69221 -36.48112 -35.25017 -33.36062 -32.37040 -30.50904 -29.87878 -27.48342 -26.65269 -24.39301 -22.97173 -21.53846 -21.31679 -20.59094 -19.57908 -16.96462 -16.29046 -15.81194 -15.59585 -15.00312 -14.66119 -14.25973 -14.09479 -13.63493 -13.42408 -13.10616 -13.02037 -12.72055 -12.65654 -12.28561 -12.20453 -11.92191 -11.67420 -11.60332 -11.46624 -11.37106 -11.21412 -10.99386 -10.95919 -10.68035 -10.63219 -10.30811 -9.89493 -9.13970 -9.00889 -8.44511 -8.23691 -7.17714 -5.98744 -3.99922 1.63012 1.74911 2.65912 2.74933 3.33871 3.41087 3.46678 4.29691 4.45067 4.47763 4.62328 4.69514 4.92489 5.07374 5.15506 5.17778 5.32861 5.37325 5.40095 5.41070 5.53688 5.61214 5.71697 5.75018 5.76419 5.82705 5.93582 5.96120 6.02712 6.27948 6.39927 6.72109 6.80932 7.31768 7.48596 7.67638 7.84667 8.18684 8.48760 8.68571 9.10077 9.64785 11.12400 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.003415 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.774732 B = 8197.172104 C = 8711.116886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.131 3.869 5 N -0.369 5.369 6 N -0.282 5.282 7 C 0.087 3.913 8 C -0.074 4.074 9 C -0.193 4.193 10 C 0.132 3.868 11 N -0.682 5.682 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.137 3.863 22 Cl -0.002 7.002 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.328 0.672 38 H -0.014 1.014 39 H 0.028 0.972 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -14.525 -9.748 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.010 3.990 5 N -0.154 5.154 6 N -0.105 5.105 7 C -0.079 4.079 8 C -0.133 4.133 9 C -0.206 4.206 10 C 0.002 3.998 11 N -0.312 5.312 12 C 0.068 3.932 13 C -0.548 4.548 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.016 4.016 22 Cl 0.026 6.974 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.144 0.856 38 H 0.004 0.996 39 H 0.046 0.954 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.955 -15.726 -9.927 23.865 hybrid contribution 1.092 1.048 0.620 1.635 sum -13.864 -14.678 -9.308 22.233 Atomic orbital electron populations 1.21748 0.95343 1.01758 1.02069 1.21442 0.96409 0.95595 1.02434 1.22036 0.93840 0.98054 1.03575 1.21767 0.94847 0.77784 1.04606 1.48542 1.52497 1.12111 1.02265 1.77387 1.23565 1.03713 1.05856 1.22150 0.98323 0.94196 0.93247 1.20224 1.02195 0.93384 0.97463 1.19773 1.11223 0.96089 0.93470 1.20162 0.92199 0.91336 0.96114 1.60706 1.00451 1.49342 1.20721 1.19561 0.95774 0.85927 0.91965 1.21226 0.93444 1.09606 1.30544 0.91978 1.24981 0.98425 0.95271 0.95937 1.69974 1.35875 1.13659 1.34326 0.86457 0.85201 0.77888 0.77951 1.19690 1.21134 1.21065 1.21392 1.04644 0.92576 0.82938 1.98401 1.96185 1.91121 1.11662 0.92582 0.92646 0.92526 0.91585 0.91561 0.91177 0.90867 0.88485 0.88937 0.90015 0.90964 0.90062 0.91043 0.95178 0.85571 0.99576 0.95399 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.14 -1.18 5.54 -26.73 -0.15 -1.33 16 4 C 0.13 1.33 6.28 -4.04 -0.03 1.30 16 5 N -0.37 -5.22 3.61 -58.15 -0.21 -5.43 16 6 N -0.28 -4.34 12.57 33.67 0.42 -3.92 16 7 C 0.09 1.34 7.22 -82.41 -0.59 0.74 16 8 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 9 C -0.19 -3.24 5.62 -105.01 -0.59 -3.83 16 10 C 0.13 2.45 5.81 -4.97 -0.03 2.43 16 11 N -0.68 -14.94 6.48 -116.34 -0.75 -15.69 16 12 C 0.19 5.11 5.44 -4.97 -0.03 5.09 16 13 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 14 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.14 2.15 7.45 -17.16 -0.13 2.03 16 22 Cl 0.00 -0.02 28.34 -51.86 -1.47 -1.49 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.85 7.81 -51.93 -0.41 0.44 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.97 7.25 -51.93 -0.38 0.59 16 35 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 36 H 0.03 0.54 7.25 -51.93 -0.38 0.16 16 37 H 0.33 6.97 8.71 -39.29 -0.34 6.63 16 38 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -31.58 352.13 -8.90 -40.48 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.53 Total: -0.83 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.38 Total: -9.05 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.20 Total: -51.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.47 Total: -1.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.58 -8.90 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743714598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.259 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds