Wall clock time and date at job start Tue Mar 31 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 C 1.53001 * 109.47370 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47361 * 179.97438 * 4 3 2 6 6 N 1.40087 * 126.03713 * 269.95992 * 5 4 3 7 7 C 1.30835 * 108.23423 * 179.75087 * 6 5 4 8 8 C 1.50700 * 125.88738 * 180.25172 * 7 6 5 9 9 C 1.39852 * 108.22227 * 0.43950 * 7 6 5 10 10 C 1.50704 * 126.05178 * 179.81506 * 9 7 6 11 11 N 1.46898 * 109.47041 * 269.71656 * 10 9 7 12 12 C 1.46906 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47140 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99839 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99833 * 17 15 13 21 21 C 1.34985 * 126.03846 * 89.99819 * 5 4 3 22 22 Cl 1.73600 * 126.13817 * 359.94162 * 21 5 4 23 23 H 1.08994 * 109.47115 * 300.00337 * 1 2 3 24 24 H 1.08998 * 109.46769 * 60.00061 * 1 2 3 25 25 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46808 * 239.99460 * 2 1 3 27 27 H 1.08998 * 109.46769 * 119.99939 * 2 1 3 28 28 H 1.08999 * 109.47206 * 59.99284 * 3 2 1 29 29 H 1.09003 * 109.47059 * 300.00208 * 3 2 1 30 30 H 1.09001 * 109.46808 * 59.99460 * 4 3 2 31 31 H 1.08998 * 109.46769 * 299.99939 * 4 3 2 32 32 H 1.09004 * 109.47648 * 270.22164 * 8 7 6 33 33 H 1.09006 * 109.47210 * 30.21949 * 8 7 6 34 34 H 1.09001 * 109.47057 * 150.21291 * 8 7 6 35 35 H 1.08997 * 109.46924 * 149.71567 * 10 9 7 36 36 H 1.08995 * 109.46962 * 29.71721 * 10 9 7 37 37 H 1.00901 * 111.00121 * 56.04537 * 11 10 9 38 38 H 1.09004 * 109.47040 * 299.99934 * 12 11 10 39 39 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 40 40 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 7 4.3334 3.6000 -1.1344 7 6 4.7435 4.7764 -0.7349 8 6 5.1416 5.9233 -1.6278 9 6 4.7528 4.7846 0.6635 10 6 5.1618 5.9396 1.5410 11 7 6.6004 5.8529 1.8256 12 6 7.0360 6.9656 2.6801 13 6 8.5134 6.8428 2.9505 14 1 9.0728 6.0201 2.5301 15 6 9.1508 7.7800 3.7356 16 7 8.4695 8.7815 4.2480 17 14 10.9823 7.6281 4.0702 18 1 11.5126 6.4229 3.3836 19 1 11.6803 8.8359 3.5609 20 1 11.2097 7.5046 5.5325 21 6 4.3236 3.5726 1.0899 22 17 4.1458 3.0726 2.7428 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9285 0.8891 32 1 6.2074 5.8598 -1.8476 33 1 4.5753 5.8732 -2.5579 34 1 4.9301 6.8664 -1.1240 35 1 4.6034 5.9009 2.4762 36 1 4.9487 6.8780 1.0291 37 1 7.1368 5.8218 0.9716 38 1 6.8359 7.9110 2.1757 39 1 6.4905 6.9345 3.6233 40 1 8.9179 9.4406 4.8006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743714598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:49 Heat of formation + Delta-G solvation = 27.433600 kcal Electronic energy + Delta-G solvation = -19927.929977 eV Core-core repulsion = 16803.591058 eV Total energy + Delta-G solvation = -3124.338919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43737 -37.87592 -37.51863 -36.73645 -34.75468 -34.03181 -31.74941 -30.99181 -28.84205 -28.06471 -25.86245 -24.06632 -23.27813 -22.17914 -21.78250 -20.76699 -18.62253 -17.84555 -16.83236 -16.65285 -16.47032 -16.32710 -15.68338 -15.12256 -14.78482 -14.62222 -14.51043 -14.10187 -13.93477 -13.80806 -13.51658 -13.27939 -13.21890 -13.05513 -12.88218 -12.65805 -12.59444 -12.34650 -12.32381 -12.22176 -12.04960 -11.93623 -11.58074 -11.49316 -11.25391 -10.62984 -10.12890 -9.52049 -8.99797 -8.18379 -6.28595 0.43937 0.55806 1.42835 1.43564 1.50753 1.57677 1.62276 2.43314 3.14891 3.31576 3.74800 3.80732 3.83724 4.01465 4.08986 4.16484 4.29006 4.33435 4.38071 4.59282 4.69296 4.72672 4.83211 4.86184 4.88935 4.96491 5.00467 5.01230 5.18156 5.19251 5.27585 5.34282 5.40167 5.53520 5.66124 5.73603 6.07427 6.49305 6.52984 6.77245 6.94600 7.41979 8.93161 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.003415 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.774732 B = 8197.172104 C = 8711.116886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.127 4.127 4 C 0.121 3.879 5 N -0.363 5.363 6 N -0.292 5.292 7 C 0.083 3.917 8 C -0.074 4.074 9 C -0.218 4.218 10 C 0.140 3.860 11 N -0.680 5.680 12 C 0.211 3.789 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.280 1.280 21 C 0.135 3.865 22 Cl 0.005 6.995 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.333 0.667 38 H -0.034 1.034 39 H 0.000 1.000 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -15.935 -10.489 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.002 3.998 5 N -0.147 5.147 6 N -0.116 5.116 7 C -0.082 4.082 8 C -0.132 4.132 9 C -0.231 4.231 10 C 0.010 3.990 11 N -0.310 5.310 12 C 0.083 3.917 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.019 4.019 22 Cl 0.033 6.967 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.150 0.850 38 H -0.017 1.017 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.561 -17.166 -10.695 24.922 hybrid contribution 0.869 1.421 0.847 1.868 sum -13.692 -15.746 -9.848 23.074 Atomic orbital electron populations 1.21758 0.95120 1.02384 1.01753 1.21430 0.96535 0.94056 1.03369 1.21952 0.92659 0.99411 1.02545 1.22160 0.95805 0.75976 1.05887 1.48875 1.51406 1.12997 1.01452 1.77359 1.23931 1.03868 1.06437 1.22519 0.97847 0.94883 0.92965 1.20320 1.02764 0.92333 0.97781 1.19633 1.13367 0.96046 0.94040 1.20029 0.89857 0.92786 0.96285 1.60582 1.02547 1.47164 1.20733 1.19193 0.94808 0.86395 0.91292 1.21545 0.94539 1.09792 1.30944 0.92051 1.25900 1.03476 0.94738 0.95478 1.70092 1.38019 1.14425 1.34843 0.85328 0.79050 0.78278 0.77886 1.18863 1.20224 1.20531 1.21498 1.04082 0.92702 0.83653 1.98401 1.96112 1.91010 1.11156 0.93030 0.92891 0.91431 0.90534 0.90734 0.92216 0.91867 0.87055 0.87790 0.89483 0.89109 0.89948 0.91960 0.94519 0.85003 1.01655 0.98190 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.29 5.93 30.59 0.18 -1.11 16 3 C -0.13 -2.03 5.54 30.59 0.17 -1.87 16 4 C 0.12 2.25 6.28 86.38 0.54 2.80 16 5 N -0.36 -9.84 3.61 -337.90 -1.22 -11.06 16 6 N -0.29 -8.65 12.57 -47.40 -0.60 -9.25 16 7 C 0.08 2.49 7.22 43.10 0.31 2.81 16 8 C -0.07 -1.72 10.26 71.24 0.73 -0.99 16 9 C -0.22 -7.24 5.62 -20.11 -0.11 -7.35 16 10 C 0.14 5.26 5.81 85.56 0.50 5.76 16 11 N -0.68 -30.10 6.48 -521.97 -3.38 -33.48 16 12 C 0.21 11.38 5.44 85.56 0.47 11.84 16 13 C -0.53 -30.50 9.32 25.60 0.24 -30.27 16 14 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 17 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.14 4.15 7.45 83.57 0.62 4.77 16 22 Cl 0.01 0.15 28.34 -2.72 -0.08 0.07 16 23 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.71 7.81 -2.39 -0.02 1.69 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.08 1.90 7.25 -2.39 -0.02 1.88 16 35 H 0.06 2.42 7.91 -2.39 -0.02 2.40 16 36 H 0.04 1.33 7.25 -2.39 -0.02 1.31 16 37 H 0.33 14.17 8.71 -89.69 -0.78 13.39 16 38 H -0.03 -1.95 8.14 -2.38 -0.02 -1.97 16 39 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -66.79 352.13 2.10 -64.69 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.24 Total: 12.57 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 4.82 Total: -13.97 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.91 Total: -110.07 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -66.79 2.10 -64.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743714598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.127 kcal (2) G-P(sol) polarization free energy of solvation -66.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds