Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34633 * 116.99969 * 2 1 4 4 O 1.21511 * 120.00395 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99942 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00336 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46978 * 61.02619 * 6 5 3 8 8 C 1.52997 * 109.46906 * 301.02909 * 6 5 3 9 9 C 1.50694 * 109.47037 * 181.02651 * 6 5 3 10 10 O 1.20830 * 119.99484 * 143.85818 * 9 6 5 11 11 O 1.34225 * 120.00441 * 323.85258 * 9 6 5 12 12 C 1.45204 * 117.00111 * 185.09597 * 11 9 6 13 13 C 1.52995 * 109.47152 * 184.85761 * 12 11 9 14 14 C 1.50703 * 115.54805 * 297.79232 * 13 12 11 15 15 H 1.07995 * 120.00005 * 94.31151 * 14 13 12 16 16 C 1.37878 * 119.99765 * 274.02721 * 14 13 12 17 17 N 1.31519 * 120.00091 * 355.44936 * 16 14 13 18 18 Si 1.86800 * 119.99865 * 175.44341 * 16 14 13 19 19 H 1.48497 * 109.47342 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46927 * 120.00384 * 18 16 14 21 21 H 1.48495 * 109.47272 * 240.00394 * 18 16 14 22 22 C 1.52997 * 117.50086 * 83.46133 * 13 12 11 23 23 C 1.52996 * 117.50008 * 152.12002 * 13 12 11 24 24 H 1.09005 * 109.46757 * 299.99925 * 1 2 3 25 25 H 1.08993 * 109.47193 * 59.99803 * 1 2 3 26 26 H 1.09004 * 109.46936 * 180.02562 * 1 2 3 27 27 H 0.97004 * 120.00432 * 359.97438 * 5 3 2 28 28 H 1.08996 * 109.46849 * 180.02562 * 7 6 5 29 29 H 1.09006 * 109.46908 * 300.00456 * 7 6 5 30 30 H 1.08998 * 109.47111 * 59.99906 * 7 6 5 31 31 H 1.09004 * 109.47213 * 299.99933 * 8 6 5 32 32 H 1.09006 * 109.47206 * 59.99966 * 8 6 5 33 33 H 1.09004 * 109.47013 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.46508 * 64.85616 * 12 11 9 35 35 H 1.09005 * 109.47192 * 304.85810 * 12 11 9 36 36 H 0.97000 * 119.99685 * 184.99080 * 17 16 14 37 37 H 1.09000 * 117.50269 * 215.00424 * 22 13 12 38 38 H 1.09007 * 117.49607 * 0.02562 * 22 13 12 39 39 H 1.09003 * 117.50042 * 359.97438 * 23 13 12 40 40 H 1.09001 * 117.50355 * 144.97343 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 6 3.6838 3.3474 1.2609 8 6 3.6429 3.3671 -1.2372 9 6 5.5681 2.3780 -0.0271 10 8 6.2676 3.1415 -0.6498 11 8 6.1215 1.3541 0.6416 12 6 7.5719 1.2903 0.6668 13 6 8.0137 0.0024 1.3645 14 6 7.6013 -0.1291 2.8081 15 1 6.6929 -0.6538 3.0645 16 6 8.3869 0.4154 3.8018 17 7 9.5398 0.9709 3.4984 18 14 7.8136 0.3643 5.5789 19 1 6.4928 -0.3103 5.6537 20 1 8.7999 -0.3874 6.3957 21 1 7.6925 1.7496 6.1000 22 6 8.0621 -1.2754 0.5244 23 6 9.3625 -0.5944 0.9579 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9375 0.4566 -0.0005 28 1 4.1783 4.3187 1.2602 29 1 2.6033 3.4901 1.2796 30 1 3.9911 2.7834 2.1415 31 1 3.9211 2.8171 -2.1363 32 1 2.5624 3.5099 -1.2184 33 1 4.1375 4.3385 -1.2374 34 1 7.9639 2.1505 1.2095 35 1 7.9539 1.2999 -0.3541 36 1 10.1253 1.2889 4.2034 37 1 7.7956 -2.2111 1.0157 38 1 7.7795 -1.1983 -0.5256 39 1 9.9350 -0.0697 0.1930 40 1 9.9519 -1.0818 1.7346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -157.872236 kcal Electronic energy + Delta-G solvation = -23545.522172 eV Core-core repulsion = 19940.145874 eV Total energy + Delta-G solvation = -3605.376299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19652 -41.23760 -38.89478 -38.17524 -37.10764 -36.46811 -33.99461 -32.79912 -29.04278 -28.43269 -28.29430 -27.38486 -25.27686 -22.97977 -22.69498 -21.21781 -20.91824 -20.10082 -18.95096 -18.33198 -17.72068 -17.50338 -17.40113 -17.08480 -16.53002 -15.79070 -15.64401 -15.13110 -14.87296 -14.78186 -14.37737 -14.12739 -13.80474 -13.57696 -13.42586 -13.31099 -13.05686 -12.90108 -12.87419 -12.84540 -12.52135 -12.39109 -12.06756 -11.86993 -11.74596 -11.68896 -11.48024 -11.22466 -10.88266 -10.48405 -10.44956 -10.07373 -8.11541 -6.23673 0.75493 1.25490 1.39348 1.43720 1.52844 1.54026 1.69568 2.42023 3.15379 3.16505 3.28140 3.52275 3.69890 3.80612 4.12356 4.36811 4.38721 4.43531 4.43774 4.47673 4.58798 4.63472 4.65449 4.71258 4.76139 4.81972 4.99778 5.00767 5.13594 5.14379 5.20997 5.31355 5.38286 5.55841 5.66799 5.77341 6.26586 6.35847 6.60812 6.81933 7.20294 7.45009 8.95648 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.005015 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.011337 B = 5581.855086 C = 5999.459801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.656 3.344 4 O -0.585 6.585 5 N -0.697 5.697 6 C 0.214 3.786 7 C -0.163 4.163 8 C -0.149 4.149 9 C 0.459 3.541 10 O -0.523 6.523 11 O -0.336 6.336 12 C 0.127 3.873 13 C 0.000 4.000 14 C -0.497 4.497 15 H 0.055 0.945 16 C 0.025 3.975 17 N -0.909 5.909 18 Si 0.946 3.054 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.178 4.178 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.420 0.580 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 -0.419 -7.547 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.410 3.590 4 O -0.476 6.476 5 N -0.359 5.359 6 C 0.128 3.872 7 C -0.221 4.221 8 C -0.207 4.207 9 C 0.301 3.699 10 O -0.411 6.411 11 O -0.251 6.251 12 C 0.053 3.947 13 C 0.000 4.000 14 C -0.534 4.534 15 H 0.074 0.926 16 C -0.175 4.175 17 N -0.547 5.547 18 Si 0.772 3.228 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.215 4.215 23 C -0.178 4.178 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.257 0.743 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.690 0.372 -7.647 16.566 hybrid contribution 0.588 -0.128 1.107 1.260 sum -14.102 0.244 -6.540 15.546 Atomic orbital electron populations 1.23533 0.72405 1.05612 1.02891 1.86292 1.26095 1.29978 1.86585 1.18003 0.82883 0.82551 0.75576 1.90908 1.64995 1.35074 1.56642 1.44639 1.03637 1.09620 1.77970 1.20194 0.82383 0.83972 1.00700 1.22277 1.05041 1.00453 0.94342 1.22164 1.04231 1.00374 0.93895 1.23865 0.91905 0.78728 0.75401 1.90642 1.64026 1.45011 1.41460 1.86528 1.26137 1.45627 1.66830 1.22616 0.74294 0.99641 0.98109 1.18895 0.98377 0.89005 0.93718 1.20636 1.08063 1.34979 0.89772 0.92634 1.25652 0.95081 0.94422 1.02374 1.70088 1.10354 1.40734 1.33527 0.85685 0.78734 0.77586 0.80785 1.19069 1.20581 1.21058 1.23042 1.02056 0.97433 0.98998 1.22421 0.90547 1.03762 1.01086 0.91842 0.91426 0.84966 0.74285 0.89739 0.88179 0.91866 0.91655 0.88481 0.89674 0.93923 0.92613 0.93039 0.89721 0.88946 0.90549 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.56 113.37 1.20 1.94 16 2 O -0.38 -8.72 10.62 -55.42 -0.59 -9.31 16 3 C 0.66 17.51 8.17 129.79 1.06 18.57 16 4 O -0.59 -16.93 12.34 19.81 0.24 -16.69 16 5 N -0.70 -18.91 5.04 -553.77 -2.79 -21.70 16 6 C 0.21 6.16 1.01 2.85 0.00 6.17 16 7 C -0.16 -4.50 8.40 71.98 0.60 -3.90 16 8 C -0.15 -3.76 7.90 71.98 0.57 -3.19 16 9 C 0.46 16.33 6.74 71.23 0.48 16.81 16 10 O -0.52 -20.59 15.74 21.95 0.35 -20.24 16 11 O -0.34 -13.49 9.35 -51.37 -0.48 -13.97 16 12 C 0.13 5.67 5.39 71.98 0.39 6.06 16 13 C 0.00 0.02 1.72 -52.93 -0.09 -0.07 16 14 C -0.50 -26.14 8.73 25.60 0.22 -25.91 16 15 H 0.06 2.94 7.82 -2.91 -0.02 2.91 16 16 C 0.02 1.33 5.43 84.65 0.46 1.79 16 17 N -0.91 -50.53 12.60 21.45 0.27 -50.26 16 18 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C -0.18 -7.14 9.95 30.62 0.30 -6.83 16 23 C -0.14 -6.28 9.10 30.61 0.28 -6.00 16 24 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.42 11.21 8.04 -92.71 -0.75 10.47 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.10 2.67 6.24 -2.38 -0.01 2.65 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 2.41 6.09 -2.38 -0.01 2.40 16 33 H 0.08 2.08 7.88 -2.38 -0.02 2.06 16 34 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.32 7.93 -2.38 -0.02 2.30 16 36 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.07 3.40 8.13 -2.39 -0.02 3.38 16 Total: -1.00 -61.95 341.51 4.80 -57.15 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.30 Total: 25.04 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.48 Total: 5.43 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.52 Total: -71.96 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -0.48 Total: -60.20 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -61.95 4.80 -57.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.725 kcal (2) G-P(sol) polarization free energy of solvation -61.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds