Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46927 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47167 * 150.00021 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 O 1.45200 * 109.47207 * 180.28017 * 13 11 10 15 15 C 1.34231 * 117.00542 * 180.02562 * 14 13 11 16 16 O 1.20828 * 119.99365 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00499 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46985 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.45548 * 54.30006 * 19 18 17 21 21 C 1.54506 * 110.51166 * 176.90783 * 19 18 17 22 22 C 1.54478 * 104.06763 * 118.64424 * 21 19 18 23 23 O 1.44426 * 104.80061 * 23.97609 * 22 21 19 24 24 C 1.44643 * 105.37054 * 319.56882 * 23 22 21 25 25 H 0.97004 * 120.00400 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 27 27 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 28 28 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 29 29 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 30 30 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 31 31 H 1.09001 * 109.46767 * 300.00106 * 17 15 14 32 32 H 1.08995 * 109.46906 * 59.99444 * 17 15 14 33 33 H 1.09001 * 109.47131 * 300.00146 * 18 17 15 34 34 H 1.09003 * 109.46819 * 60.00050 * 18 17 15 35 35 H 1.09000 * 110.50954 * 237.28999 * 21 19 18 36 36 H 1.09007 * 110.51122 * 359.85908 * 21 19 18 37 37 H 1.09000 * 110.37236 * 142.80808 * 22 21 19 38 38 H 1.09000 * 110.37254 * 265.15123 * 22 21 19 39 39 H 1.08995 * 110.34171 * 281.58811 * 24 23 22 40 40 H 1.09004 * 110.50500 * 159.18602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 5.3249 -2.8214 -0.0001 12 8 6.1131 -1.8996 0.0004 13 6 5.8273 -4.2422 0.0060 14 8 7.2793 -4.2422 0.0114 15 6 7.8888 -5.4382 0.0167 16 8 7.2307 -6.4515 0.0173 17 6 9.3937 -5.5170 0.0219 18 6 9.8275 -6.9842 0.0280 19 6 11.3554 -7.0642 0.0326 20 1 11.7646 -6.4862 0.8612 21 6 11.8202 -8.5353 0.1169 22 6 12.6183 -8.7522 -1.1879 23 8 13.0532 -7.4315 -1.5783 24 6 11.9277 -6.5629 -1.3118 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6807 0.8904 27 1 3.8751 -0.6796 -0.8895 28 1 3.3696 -3.3126 -0.0009 29 1 5.4607 -4.7534 0.8963 30 1 5.4673 -4.7588 -0.8837 31 1 9.7863 -5.0253 -0.8682 32 1 9.7804 -5.0204 0.9117 33 1 9.4349 -7.4755 0.9183 34 1 9.4407 -7.4811 -0.8617 35 1 12.4612 -8.6841 0.9858 36 1 10.9615 -9.2055 0.1578 37 1 13.4783 -9.3961 -1.0040 38 1 11.9778 -9.1836 -1.9572 39 1 11.1815 -6.6569 -2.1006 40 1 12.2573 -5.5278 -1.2216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751714158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -183.235667 kcal Electronic energy + Delta-G solvation = -21542.401478 eV Core-core repulsion = 17935.925338 eV Total energy + Delta-G solvation = -3606.476140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77842 -39.83333 -38.90520 -36.62430 -34.95960 -34.40836 -32.46225 -31.47463 -29.75706 -28.92655 -27.18268 -25.00788 -23.14722 -22.17933 -20.98516 -20.58001 -20.15787 -17.92893 -17.58838 -17.07645 -16.84594 -16.44958 -16.04496 -15.87519 -15.53179 -15.10679 -15.07822 -14.44270 -14.11508 -13.76641 -13.29961 -13.18166 -13.04313 -12.81914 -12.44964 -12.37616 -12.11809 -11.96999 -11.90706 -11.44975 -11.16081 -11.09735 -10.96904 -10.86152 -10.76873 -10.68980 -10.20424 -10.02497 -9.57001 -9.38316 -8.84364 -8.30410 -6.26453 -4.29753 2.01650 2.30610 2.99013 3.23533 3.30442 3.38069 3.53595 3.81574 4.03309 4.24574 4.28762 4.42194 4.49869 4.60853 4.72331 4.80437 4.88947 4.98281 5.07835 5.10831 5.13322 5.17420 5.18924 5.24964 5.31448 5.37929 5.48417 5.49712 5.66621 5.81084 6.25094 6.35789 6.70099 6.97912 7.05924 7.28886 7.55619 8.01846 8.38219 8.64846 8.76742 9.32459 10.85255 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050896 B = 0.002237 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.014273 B =12515.183332 C =12875.486750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.537 6.537 13 C 0.049 3.951 14 O -0.331 6.331 15 C 0.460 3.540 16 O -0.512 6.512 17 C -0.115 4.115 18 C -0.100 4.100 19 C -0.123 4.123 20 H 0.088 0.912 21 C -0.152 4.152 22 C 0.043 3.957 23 O -0.378 6.378 24 C 0.044 3.956 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.412 -16.893 -0.074 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.414 6.414 13 C -0.029 4.029 14 O -0.246 6.246 15 C 0.303 3.697 16 O -0.400 6.400 17 C -0.153 4.153 18 C -0.138 4.138 19 C -0.142 4.142 20 H 0.107 0.893 21 C -0.189 4.189 22 C -0.034 4.034 23 O -0.297 6.297 24 C -0.032 4.032 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.767 -16.302 -0.160 28.002 hybrid contribution -0.498 0.379 0.098 0.633 sum 22.269 -15.923 -0.062 27.376 Atomic orbital electron populations 1.69875 1.06212 1.27530 1.49105 1.24792 0.94816 0.99209 0.93782 0.86810 0.80557 0.83173 0.79114 1.19774 1.20822 1.18482 1.21065 0.88326 0.95348 1.53714 0.90124 1.19557 0.95379 0.77949 0.97079 1.46073 1.04875 1.11557 1.72478 1.19939 0.83704 0.89461 0.78425 1.90701 1.55335 1.45687 1.49721 1.22821 0.77950 0.97262 1.04821 1.86562 1.21810 1.32825 1.83361 1.23815 0.92264 0.81281 0.72318 1.90675 1.67247 1.36404 1.45670 1.21452 0.87611 0.99820 1.06406 1.21515 0.93700 0.94181 1.04369 1.22586 0.95501 0.96866 0.99207 0.89329 1.23006 1.00760 0.96226 0.98948 1.23425 0.98918 0.85946 0.95061 1.89161 1.36237 1.18096 1.86157 1.23657 0.88849 0.95463 0.95280 0.92166 0.95415 0.95862 0.76697 0.88309 0.88325 0.87417 0.87223 0.90283 0.90522 0.90471 0.90040 0.89134 0.92197 0.91836 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.42 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 10 N -0.70 -13.70 5.55 -61.47 -0.34 -14.04 16 11 C 0.50 9.40 7.91 -10.98 -0.09 9.32 16 12 O -0.54 -12.22 16.50 -14.11 -0.23 -12.45 16 13 C 0.05 0.69 5.94 36.01 0.21 0.91 16 14 O -0.33 -4.77 9.75 -45.91 -0.45 -5.22 16 15 C 0.46 5.44 7.96 36.00 0.29 5.73 16 16 O -0.51 -7.04 15.73 -18.75 -0.29 -7.34 16 17 C -0.12 -0.87 5.67 -27.88 -0.16 -1.03 16 18 C -0.10 -0.67 3.71 -26.73 -0.10 -0.77 16 19 C -0.12 -0.71 3.13 -89.05 -0.28 -0.99 16 20 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.15 -0.82 6.74 -25.17 -0.17 -0.99 16 22 C 0.04 0.27 7.64 37.93 0.29 0.56 16 23 O -0.38 -3.37 11.65 -35.23 -0.41 -3.78 16 24 C 0.04 0.30 6.43 37.93 0.24 0.54 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 27 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 28 H 0.40 6.73 8.32 -40.82 -0.34 6.39 16 29 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 31 H 0.11 0.67 7.55 -51.93 -0.39 0.28 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.08 0.56 7.97 -51.93 -0.41 0.15 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.41 7.78 -51.93 -0.40 0.00 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -34.09 339.80 -6.82 -40.91 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.10 Total: 0.08 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.22 Total: 5.63 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.43 Total: -39.35 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.39 Total: -28.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.09 -6.82 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751714158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.328 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds