Wall clock time and date at job start Tue Mar 31 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46927 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47167 * 150.00021 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 O 1.45200 * 109.47207 * 180.28017 * 13 11 10 15 15 C 1.34231 * 117.00542 * 180.02562 * 14 13 11 16 16 O 1.20828 * 119.99365 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00499 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46985 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.45548 * 54.30006 * 19 18 17 21 21 C 1.54506 * 110.51166 * 176.90783 * 19 18 17 22 22 C 1.54478 * 104.06763 * 118.64424 * 21 19 18 23 23 O 1.44426 * 104.80061 * 23.97609 * 22 21 19 24 24 C 1.44643 * 105.37054 * 319.56882 * 23 22 21 25 25 H 0.97004 * 120.00400 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 27 27 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 28 28 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 29 29 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 30 30 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 31 31 H 1.09001 * 109.46767 * 300.00106 * 17 15 14 32 32 H 1.08995 * 109.46906 * 59.99444 * 17 15 14 33 33 H 1.09001 * 109.47131 * 300.00146 * 18 17 15 34 34 H 1.09003 * 109.46819 * 60.00050 * 18 17 15 35 35 H 1.09000 * 110.50954 * 237.28999 * 21 19 18 36 36 H 1.09007 * 110.51122 * 359.85908 * 21 19 18 37 37 H 1.09000 * 110.37236 * 142.80808 * 22 21 19 38 38 H 1.09000 * 110.37254 * 265.15123 * 22 21 19 39 39 H 1.08995 * 110.34171 * 281.58811 * 24 23 22 40 40 H 1.09004 * 110.50500 * 159.18602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 5.3249 -2.8214 -0.0001 12 8 6.1131 -1.8996 0.0004 13 6 5.8273 -4.2422 0.0060 14 8 7.2793 -4.2422 0.0114 15 6 7.8888 -5.4382 0.0167 16 8 7.2307 -6.4515 0.0173 17 6 9.3937 -5.5170 0.0219 18 6 9.8275 -6.9842 0.0280 19 6 11.3554 -7.0642 0.0326 20 1 11.7646 -6.4862 0.8612 21 6 11.8202 -8.5353 0.1169 22 6 12.6183 -8.7522 -1.1879 23 8 13.0532 -7.4315 -1.5783 24 6 11.9277 -6.5629 -1.3118 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6807 0.8904 27 1 3.8751 -0.6796 -0.8895 28 1 3.3696 -3.3126 -0.0009 29 1 5.4607 -4.7534 0.8963 30 1 5.4673 -4.7588 -0.8837 31 1 9.7863 -5.0253 -0.8682 32 1 9.7804 -5.0204 0.9117 33 1 9.4349 -7.4755 0.9183 34 1 9.4407 -7.4811 -0.8617 35 1 12.4612 -8.6841 0.9858 36 1 10.9615 -9.2055 0.1578 37 1 13.4783 -9.3961 -1.0040 38 1 11.9778 -9.1836 -1.9572 39 1 11.1815 -6.6569 -2.1006 40 1 12.2573 -5.5278 -1.2216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751714158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:27 Heat of formation + Delta-G solvation = -206.846858 kcal Electronic energy + Delta-G solvation = -21543.425336 eV Core-core repulsion = 17935.925338 eV Total energy + Delta-G solvation = -3607.499998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77196 -40.55457 -40.23350 -37.67693 -36.21336 -35.57049 -34.47222 -32.08094 -31.09911 -29.72813 -28.66727 -25.70909 -24.15686 -23.55902 -21.83874 -21.70312 -21.12591 -19.37720 -18.79728 -18.12618 -18.00001 -17.37469 -17.07603 -16.75055 -16.60511 -16.42950 -16.14698 -15.80988 -15.25995 -14.84181 -14.62091 -14.36148 -14.14184 -13.89153 -13.68121 -13.53489 -13.19613 -13.08876 -12.71330 -12.52384 -12.38960 -11.96130 -11.93971 -11.89470 -11.69178 -11.65389 -11.59008 -11.39947 -10.97391 -10.93037 -10.73233 -10.05388 -8.40666 -6.48503 1.11372 1.26946 1.33675 1.37083 1.47672 1.50791 2.27768 2.49149 2.94636 3.07373 3.54786 3.59284 3.69949 3.79180 3.99043 4.03618 4.04274 4.14553 4.21070 4.31719 4.44145 4.54459 4.64202 4.74111 4.80477 4.86932 4.91331 4.99522 5.02728 5.05631 5.18194 5.22129 5.28943 5.36570 5.39826 5.87658 6.04779 6.50991 6.59933 6.72328 7.10640 7.26156 8.73812 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050896 B = 0.002237 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.014273 B =12515.183332 C =12875.486750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.698 5.698 11 C 0.504 3.496 12 O -0.578 6.578 13 C 0.058 3.942 14 O -0.349 6.349 15 C 0.461 3.539 16 O -0.533 6.533 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.116 4.116 20 H 0.098 0.902 21 C -0.150 4.150 22 C 0.037 3.963 23 O -0.405 6.405 24 C 0.038 3.962 25 H 0.273 0.727 26 H 0.018 0.982 27 H 0.016 0.984 28 H 0.413 0.587 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.002 -17.342 0.174 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.290 3.710 12 O -0.458 6.458 13 C -0.019 4.019 14 O -0.265 6.265 15 C 0.306 3.694 16 O -0.422 6.422 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.135 4.135 20 H 0.117 0.883 21 C -0.188 4.188 22 C -0.040 4.040 23 O -0.324 6.324 24 C -0.038 4.038 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.249 0.751 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.358 -16.795 0.087 29.587 hybrid contribution -0.989 0.417 0.009 1.073 sum 23.369 -16.378 0.097 28.537 Atomic orbital electron populations 1.69978 1.07723 1.28679 1.50499 1.25612 0.95563 1.02758 0.93550 0.85847 0.79283 0.79211 0.79499 1.18944 1.19907 1.18262 1.21277 0.89834 0.94707 1.52874 0.92076 1.19173 0.93436 0.80352 0.96168 1.45876 1.05946 1.10348 1.72744 1.20616 0.82672 0.91113 0.76595 1.90678 1.56185 1.47565 1.51398 1.22693 0.78586 0.93690 1.06960 1.86569 1.21592 1.34507 1.83828 1.24607 0.93563 0.80122 0.71157 1.90667 1.67987 1.36801 1.46781 1.21632 0.84422 1.00722 1.08053 1.21441 0.94221 0.93482 1.03823 1.22531 0.94624 0.97255 0.99052 0.88344 1.23013 1.00949 0.96078 0.98745 1.23581 0.99563 0.85231 0.95580 1.89131 1.37424 1.19348 1.86542 1.23788 0.88513 0.95728 0.95769 0.91807 0.96455 0.96568 0.75107 0.86072 0.86104 0.85822 0.85304 0.90637 0.91309 0.89743 0.89537 0.88220 0.91956 0.91800 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 2 C 0.03 1.43 5.47 84.65 0.46 1.89 16 3 Si 0.94 43.22 27.47 68.60 1.88 45.10 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 7 C -0.55 -29.67 9.83 25.60 0.25 -29.41 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.23 11.05 4.50 85.64 0.39 11.44 16 10 N -0.70 -26.74 5.55 -466.79 -2.59 -29.33 16 11 C 0.50 18.29 7.91 87.66 0.69 18.99 16 12 O -0.58 -25.90 16.50 15.76 0.26 -25.64 16 13 C 0.06 1.52 5.94 71.24 0.42 1.94 16 14 O -0.35 -9.41 9.75 -45.07 -0.44 -9.84 16 15 C 0.46 9.95 7.96 71.24 0.57 10.51 16 16 O -0.53 -13.66 15.73 21.96 0.35 -13.31 16 17 C -0.11 -1.40 5.67 29.85 0.17 -1.23 16 18 C -0.09 -1.04 3.71 30.59 0.11 -0.93 16 19 C -0.12 -1.10 3.13 -9.78 -0.03 -1.13 16 20 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 21 C -0.15 -1.35 6.74 31.61 0.21 -1.14 16 22 C 0.04 0.42 7.64 72.48 0.55 0.97 16 23 O -0.40 -6.79 11.65 -148.98 -1.74 -8.52 16 24 C 0.04 0.45 6.43 72.49 0.47 0.92 16 25 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 28 H 0.41 13.50 8.32 -92.71 -0.77 12.73 16 29 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.12 2.68 8.13 -2.39 -0.02 2.66 16 31 H 0.12 1.21 7.55 -2.39 -0.02 1.19 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.07 0.90 7.97 -2.39 -0.02 0.88 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.69 7.73 -2.38 -0.02 0.67 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.73 7.78 -2.39 -0.02 0.71 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -72.72 339.80 2.51 -70.21 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.22 Total: 13.09 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 4.27 Total: 12.83 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.29 Total: -83.90 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.57 Total: -57.32 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -72.72 2.51 -70.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751714158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.636 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds