Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99779 * 2 1 4 4 H 1.48497 * 109.47320 * 240.00064 * 3 2 1 5 5 H 1.48504 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47244 * 120.00202 * 3 2 1 7 7 C 1.37872 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00358 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00020 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47445 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00101 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99924 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.46860 * 180.02562 * 13 11 10 15 15 C 1.34232 * 116.99695 * 180.02562 * 14 13 11 16 16 O 1.20829 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.50692 * 119.99832 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47315 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47564 * 180.02562 * 18 17 15 20 20 H 1.09007 * 110.90201 * 302.86588 * 19 18 17 21 21 C 1.55300 * 110.85128 * 179.28256 * 19 18 17 22 22 C 1.54940 * 100.94415 * 207.67291 * 21 19 18 23 23 O 1.43641 * 105.13614 * 36.44473 * 22 21 19 24 24 C 1.43245 * 109.97106 * 335.57089 * 23 22 21 25 25 H 0.96998 * 120.00770 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.46944 * 60.00048 * 9 7 2 27 27 H 1.08999 * 109.47032 * 300.00428 * 9 7 2 28 28 H 0.96996 * 119.99812 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.46682 * 60.00728 * 13 11 10 30 30 H 1.08997 * 109.47374 * 300.01155 * 13 11 10 31 31 H 1.08998 * 109.47610 * 59.99189 * 17 15 14 32 32 H 1.09002 * 109.47010 * 299.99200 * 17 15 14 33 33 H 1.08998 * 109.47446 * 59.99085 * 18 17 15 34 34 H 1.09002 * 109.46426 * 299.99554 * 18 17 15 35 35 H 1.09007 * 111.12449 * 325.59565 * 21 19 18 36 36 H 1.09003 * 111.12579 * 89.71048 * 21 19 18 37 37 H 1.08997 * 110.31031 * 277.52940 * 22 21 19 38 38 H 1.08999 * 110.30948 * 155.35829 * 22 21 19 39 39 H 1.09000 * 109.82609 * 121.22500 * 24 23 22 40 40 H 1.08997 * 109.82839 * 242.19401 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0288 0.0005 14 8 2.0073 -7.2862 0.0006 15 6 2.7384 -8.4120 0.0006 16 8 3.9450 -8.3487 0.0001 17 6 2.0543 -9.7547 0.0002 18 6 3.1081 -10.8640 0.0010 19 6 2.4135 -12.2273 -0.0001 20 1 1.7437 -12.3232 0.8545 21 6 3.4557 -13.3785 -0.0175 22 6 2.6472 -14.4965 -0.7225 23 8 1.8528 -13.8195 -1.7094 24 6 1.6518 -12.4548 -1.3235 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3605 -5.9709 0.8901 30 1 3.3594 -5.9710 -0.8898 31 1 1.4317 -9.8450 -0.8899 32 1 1.4313 -9.8453 0.8900 33 1 3.7303 -10.7734 0.8913 34 1 3.7314 -10.7735 -0.8886 35 1 4.3355 -13.1033 -0.5993 36 1 3.7334 -13.6724 0.9948 37 1 2.0049 -15.0083 -0.0059 38 1 3.3215 -15.2063 -1.2016 39 1 2.0434 -11.7911 -2.0943 40 1 0.5887 -12.2651 -1.1757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751714159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -187.320587 kcal Electronic energy + Delta-G solvation = -21463.223097 eV Core-core repulsion = 17856.569822 eV Total energy + Delta-G solvation = -3606.653275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.71898 -39.82524 -38.74917 -36.55770 -34.96489 -34.27325 -32.43463 -31.50690 -29.63531 -28.78193 -26.74549 -25.01043 -22.89565 -22.51667 -21.17387 -20.46106 -19.96058 -17.88664 -17.51667 -17.30497 -16.77486 -16.46321 -15.98755 -15.41159 -15.27923 -15.05828 -14.94595 -14.28814 -14.22103 -13.73481 -13.54518 -13.12958 -12.95791 -12.67139 -12.34397 -12.04964 -12.00596 -11.81454 -11.76835 -11.51803 -11.19914 -11.05230 -11.02987 -10.92207 -10.72477 -10.64335 -10.36387 -9.90939 -9.47648 -9.20724 -8.79857 -8.01456 -6.21163 -4.28915 2.06597 2.38148 3.14793 3.22990 3.27965 3.29360 3.47284 3.90775 3.94601 4.24788 4.31734 4.44584 4.49905 4.72092 4.74818 4.79709 4.91677 5.02005 5.13023 5.14713 5.20475 5.22053 5.26933 5.31048 5.32357 5.43269 5.45883 5.55829 5.69292 5.84111 6.31753 6.59028 7.20061 7.27993 7.43461 7.55986 7.64194 7.90040 8.47321 8.68731 8.93707 9.37491 10.88876 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.060253 B = 0.002109 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.594698 B =13272.806167 C =13558.482437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.330 6.330 15 C 0.460 3.540 16 O -0.513 6.513 17 C -0.116 4.116 18 C -0.098 4.098 19 C -0.124 4.124 20 H 0.090 0.910 21 C -0.152 4.152 22 C 0.050 3.950 23 O -0.386 6.386 24 C 0.050 3.950 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -25.267 0.685 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.244 6.244 15 C 0.303 3.697 16 O -0.402 6.402 17 C -0.153 4.153 18 C -0.135 4.135 19 C -0.142 4.142 20 H 0.108 0.892 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.306 6.306 24 C -0.026 4.026 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.662 -25.300 0.496 26.168 hybrid contribution 1.119 1.282 0.251 1.720 sum 7.781 -24.019 0.747 25.258 Atomic orbital electron populations 1.69958 1.06115 1.27553 1.48536 1.24952 0.94946 0.99499 0.94587 0.86440 0.79388 0.82155 0.78720 1.20035 1.21029 1.20035 1.21169 0.93301 0.90314 1.53702 0.91810 1.19177 0.88160 0.81522 0.98034 1.46372 1.11524 1.05375 1.72405 1.19900 0.89129 0.84004 0.78772 1.90709 1.16335 1.84558 1.49589 1.22864 0.94380 0.81118 1.04545 1.86572 1.40514 1.14092 1.83256 1.23792 0.86595 0.86979 0.72301 1.90669 1.15652 1.88056 1.45784 1.21449 0.99747 0.87704 1.06448 1.21402 0.96865 0.90729 1.04509 1.22781 0.97470 0.95118 0.98843 0.89151 1.23328 0.98724 0.94792 1.02152 1.23373 0.93134 0.95100 0.91033 1.88414 1.72999 1.22867 1.46277 1.23321 1.00077 0.83583 0.95655 0.92292 0.95250 0.95244 0.77425 0.88541 0.88531 0.87361 0.87242 0.90224 0.90382 0.89981 0.89690 0.92145 0.89745 0.90872 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 10 N -0.71 -14.50 5.55 -61.47 -0.34 -14.84 16 11 C 0.50 9.91 7.91 -10.98 -0.09 9.82 16 12 O -0.53 -12.97 16.50 -14.10 -0.23 -13.21 16 13 C 0.05 0.72 5.94 36.01 0.21 0.94 16 14 O -0.33 -5.00 9.76 -45.91 -0.45 -5.45 16 15 C 0.46 5.70 7.96 36.00 0.29 5.98 16 16 O -0.51 -7.29 15.73 -18.75 -0.29 -7.58 16 17 C -0.12 -0.93 5.66 -27.89 -0.16 -1.09 16 18 C -0.10 -0.68 3.89 -26.73 -0.10 -0.79 16 19 C -0.12 -0.73 3.03 -88.68 -0.27 -1.00 16 20 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 21 C -0.15 -0.83 6.62 -24.49 -0.16 -0.99 16 22 C 0.05 0.32 7.78 38.18 0.30 0.61 16 23 O -0.39 -3.59 11.36 -35.23 -0.40 -3.99 16 24 C 0.05 0.36 6.57 37.88 0.25 0.61 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 29 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.11 0.74 7.48 -51.93 -0.39 0.35 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -34.10 343.56 -7.15 -41.25 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.14 Total: 0.70 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.18 Total: 7.38 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.40 Total: -39.84 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.38 Total: -30.23 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.10 -7.15 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751714159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.070 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds