Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99779 * 2 1 4 4 H 1.48497 * 109.47320 * 240.00064 * 3 2 1 5 5 H 1.48504 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47244 * 120.00202 * 3 2 1 7 7 C 1.37872 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00358 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00020 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47445 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00101 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99924 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.46860 * 180.02562 * 13 11 10 15 15 C 1.34232 * 116.99695 * 180.02562 * 14 13 11 16 16 O 1.20829 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.50692 * 119.99832 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47315 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47564 * 180.02562 * 18 17 15 20 20 H 1.09007 * 110.90201 * 302.86588 * 19 18 17 21 21 C 1.55300 * 110.85128 * 179.28256 * 19 18 17 22 22 C 1.54940 * 100.94415 * 207.67291 * 21 19 18 23 23 O 1.43641 * 105.13614 * 36.44473 * 22 21 19 24 24 C 1.43245 * 109.97106 * 335.57089 * 23 22 21 25 25 H 0.96998 * 120.00770 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.46944 * 60.00048 * 9 7 2 27 27 H 1.08999 * 109.47032 * 300.00428 * 9 7 2 28 28 H 0.96996 * 119.99812 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.46682 * 60.00728 * 13 11 10 30 30 H 1.08997 * 109.47374 * 300.01155 * 13 11 10 31 31 H 1.08998 * 109.47610 * 59.99189 * 17 15 14 32 32 H 1.09002 * 109.47010 * 299.99200 * 17 15 14 33 33 H 1.08998 * 109.47446 * 59.99085 * 18 17 15 34 34 H 1.09002 * 109.46426 * 299.99554 * 18 17 15 35 35 H 1.09007 * 111.12449 * 325.59565 * 21 19 18 36 36 H 1.09003 * 111.12579 * 89.71048 * 21 19 18 37 37 H 1.08997 * 110.31031 * 277.52940 * 22 21 19 38 38 H 1.08999 * 110.30948 * 155.35829 * 22 21 19 39 39 H 1.09000 * 109.82609 * 121.22500 * 24 23 22 40 40 H 1.08997 * 109.82839 * 242.19401 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0288 0.0005 14 8 2.0073 -7.2862 0.0006 15 6 2.7384 -8.4120 0.0006 16 8 3.9450 -8.3487 0.0001 17 6 2.0543 -9.7547 0.0002 18 6 3.1081 -10.8640 0.0010 19 6 2.4135 -12.2273 -0.0001 20 1 1.7437 -12.3232 0.8545 21 6 3.4557 -13.3785 -0.0175 22 6 2.6472 -14.4965 -0.7225 23 8 1.8528 -13.8195 -1.7094 24 6 1.6518 -12.4548 -1.3235 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3605 -5.9709 0.8901 30 1 3.3594 -5.9710 -0.8898 31 1 1.4317 -9.8450 -0.8899 32 1 1.4313 -9.8453 0.8900 33 1 3.7303 -10.7734 0.8913 34 1 3.7314 -10.7735 -0.8886 35 1 4.3355 -13.1033 -0.5993 36 1 3.7334 -13.6724 0.9948 37 1 2.0049 -15.0083 -0.0059 38 1 3.3215 -15.2063 -1.2016 39 1 2.0434 -11.7911 -2.0943 40 1 0.5887 -12.2651 -1.1757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751714159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -210.868279 kcal Electronic energy + Delta-G solvation = -21464.244201 eV Core-core repulsion = 17856.569822 eV Total energy + Delta-G solvation = -3607.674380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76832 -40.53368 -40.23485 -37.67594 -36.19311 -35.61167 -34.42518 -32.11914 -30.86208 -29.69224 -28.43143 -25.79556 -24.56465 -23.29544 -21.95545 -21.65181 -21.11817 -19.23373 -18.82970 -18.06917 -17.84127 -17.62374 -17.16878 -16.90417 -16.54407 -16.37902 -15.85412 -15.67884 -15.18579 -14.67980 -14.51817 -14.17011 -14.05602 -14.02509 -13.76465 -13.58741 -13.08523 -12.96453 -12.68763 -12.60801 -12.29724 -12.24688 -12.05477 -11.90551 -11.65981 -11.61086 -11.53960 -11.52835 -10.91610 -10.81274 -10.46092 -9.94202 -8.29956 -6.46863 1.10818 1.29288 1.44631 1.47603 1.54392 1.56176 2.33939 2.57749 2.98564 3.05060 3.45154 3.57709 3.72459 3.77315 3.95784 4.02987 4.04759 4.18983 4.20249 4.32529 4.42517 4.53308 4.62444 4.81544 4.85824 4.94451 4.98489 5.06303 5.06497 5.16025 5.20901 5.29689 5.38075 5.41152 5.62256 5.81328 6.08001 6.59090 6.62530 6.77986 7.19683 7.34834 8.81840 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.060253 B = 0.002109 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.594698 B =13272.806167 C =13558.482437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.584 6.584 13 C 0.060 3.940 14 O -0.351 6.351 15 C 0.461 3.539 16 O -0.532 6.532 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.115 4.115 20 H 0.105 0.895 21 C -0.149 4.149 22 C 0.043 3.957 23 O -0.415 6.415 24 C 0.044 3.956 25 H 0.269 0.731 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.412 0.588 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 -25.794 1.192 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.284 3.716 12 O -0.465 6.465 13 C -0.017 4.017 14 O -0.267 6.267 15 C 0.306 3.694 16 O -0.421 6.421 17 C -0.149 4.149 18 C -0.127 4.127 19 C -0.134 4.134 20 H 0.123 0.877 21 C -0.187 4.187 22 C -0.033 4.033 23 O -0.335 6.335 24 C -0.033 4.033 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.760 -25.862 1.004 27.324 hybrid contribution 0.458 1.343 0.081 1.421 sum 9.217 -24.520 1.085 26.217 Atomic orbital electron populations 1.70120 1.08227 1.28712 1.49717 1.26057 0.95793 1.03890 0.93821 0.85194 0.77882 0.76582 0.79478 1.18710 1.21155 1.18666 1.21584 0.94430 0.90421 1.53218 0.89596 1.18627 0.88579 0.83808 0.94591 1.46055 1.11717 1.04790 1.72517 1.20738 0.89338 0.84745 0.76733 1.90683 1.18949 1.85322 1.51511 1.22703 0.92517 0.79485 1.06971 1.86582 1.41620 1.14682 1.83794 1.24582 0.86499 0.87168 0.71176 1.90659 1.16526 1.88165 1.46791 1.21632 1.00077 0.85212 1.07991 1.21330 0.96485 0.90911 1.03983 1.22731 0.97580 0.94464 0.98619 0.87707 1.23329 0.98247 0.94167 1.02924 1.23551 0.93352 0.95431 0.90945 1.88380 1.73626 1.23845 1.47689 1.23425 1.00678 0.82884 0.96265 0.92184 0.98991 0.98938 0.75132 0.85910 0.86026 0.86064 0.85250 0.90296 0.91392 0.90395 0.88017 0.91202 0.89104 0.91285 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 41.66 29.54 68.60 2.03 43.68 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.56 -29.78 9.28 25.60 0.24 -29.55 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.33 5.43 85.63 0.46 14.80 16 10 N -0.70 -28.70 5.55 -466.77 -2.59 -31.29 16 11 C 0.50 19.80 7.91 87.66 0.69 20.50 16 12 O -0.58 -29.18 16.50 15.77 0.26 -28.92 16 13 C 0.06 1.69 5.94 71.24 0.42 2.11 16 14 O -0.35 -10.19 9.76 -45.08 -0.44 -10.63 16 15 C 0.46 10.59 7.96 71.23 0.57 11.16 16 16 O -0.53 -14.10 15.73 21.96 0.35 -13.75 16 17 C -0.11 -1.56 5.66 29.85 0.17 -1.39 16 18 C -0.09 -1.08 3.89 30.59 0.12 -0.97 16 19 C -0.12 -1.12 3.03 -9.54 -0.03 -1.15 16 20 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 21 C -0.15 -1.33 6.62 32.05 0.21 -1.12 16 22 C 0.04 0.49 7.78 72.65 0.56 1.05 16 23 O -0.42 -7.39 11.36 -148.98 -1.69 -9.08 16 24 C 0.04 0.58 6.57 72.45 0.48 1.06 16 25 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.41 13.57 8.32 -92.71 -0.77 12.80 16 29 H 0.12 2.85 8.13 -2.39 -0.02 2.83 16 30 H 0.12 2.86 8.13 -2.39 -0.02 2.84 16 31 H 0.12 1.42 7.48 -2.39 -0.02 1.40 16 32 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.07 0.97 8.03 -2.39 -0.02 0.96 16 35 H 0.08 0.76 8.04 -2.38 -0.02 0.75 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.94 7.73 -2.39 -0.02 0.92 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.80 343.56 2.82 -72.98 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.27 Total: 14.85 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 4.36 Total: 17.19 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.30 Total: -86.33 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -1.53 Total: -62.38 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -75.80 2.82 -72.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751714159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.888 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds