Wall clock time and date at job start Tue Mar 31 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00241 * 2 1 4 4 C 1.50697 * 110.01779 * 60.63965 * 3 2 1 5 5 O 1.20822 * 119.99837 * 214.61469 * 4 3 2 6 6 O 1.34230 * 120.00283 * 34.60680 * 4 3 2 7 7 C 1.45193 * 117.00306 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47550 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99420 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00236 * 179.72297 * 8 7 6 11 11 C 1.46505 * 119.99843 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46979 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00011 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00175 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47332 * 89.99614 * 16 14 12 18 18 H 1.48500 * 109.47255 * 210.00105 * 16 14 12 19 19 H 1.48502 * 109.47203 * 329.99753 * 16 14 12 20 20 C 1.54262 * 110.03231 * 182.03145 * 3 2 1 21 21 C 1.54967 * 104.15991 * 95.75163 * 20 3 2 22 22 C 1.54896 * 102.77738 * 37.88714 * 21 20 3 23 23 C 1.53880 * 110.02555 * 299.24828 * 3 2 1 24 24 H 1.09005 * 109.46900 * 306.17860 * 1 2 3 25 25 H 1.09001 * 109.46664 * 66.17515 * 1 2 3 26 26 H 1.08995 * 109.47229 * 186.17774 * 1 2 3 27 27 H 1.09000 * 109.47380 * 59.99898 * 7 6 4 28 28 H 1.08998 * 109.47278 * 300.00345 * 7 6 4 29 29 H 0.96992 * 119.99939 * 0.02562 * 10 8 7 30 30 H 1.08992 * 109.47095 * 300.00334 * 11 10 8 31 31 H 1.09001 * 109.46578 * 60.00448 * 11 10 8 32 32 H 0.96997 * 120.00170 * 179.97438 * 15 14 12 33 33 H 1.08992 * 110.48637 * 214.39663 * 20 3 2 34 34 H 1.09000 * 110.48961 * 337.04337 * 20 3 2 35 35 H 1.08999 * 110.72237 * 279.57671 * 21 20 3 36 36 H 1.08996 * 110.76646 * 156.22157 * 21 20 3 37 37 H 1.09001 * 110.48360 * 203.40469 * 22 21 20 38 38 H 1.08997 * 110.48646 * 80.76225 * 22 21 20 39 39 H 1.08994 * 110.03614 * 359.95094 * 23 3 2 40 40 H 1.08998 * 110.02873 * 121.38623 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5859 2.0591 1.2341 5 8 1.4037 3.2523 1.1804 6 8 1.4102 1.4049 2.3928 7 6 1.0016 2.1948 3.5405 8 6 0.8558 1.2970 4.7421 9 8 1.0752 0.1085 4.6412 10 7 0.4875 1.8159 5.9303 11 6 0.3452 0.9430 7.0982 12 6 -0.0728 1.7639 8.2909 13 1 -0.2184 2.8292 8.1889 14 6 -0.2694 1.1550 9.5121 15 7 -0.6337 1.8714 10.5531 16 14 -0.0169 -0.6874 9.6886 17 1 1.3950 -0.9604 10.0592 18 1 -0.9168 -1.2112 10.7475 19 1 -0.3283 -1.3555 8.3994 20 6 3.5484 1.1991 -0.0514 21 6 3.8884 1.3447 -1.5563 22 6 2.8707 2.4093 -2.0360 23 6 1.5793 2.0742 -1.2614 24 1 -0.3633 0.6067 0.8296 25 1 -0.3633 0.4151 -0.9401 26 1 -0.3633 -1.0216 0.1106 27 1 0.0471 2.6767 3.3287 28 1 1.7551 2.9554 3.7450 29 1 0.3159 2.7670 6.0119 30 1 -0.4118 0.1855 6.8956 31 1 1.2985 0.4573 7.3070 32 1 -0.7724 1.4430 11.4122 33 1 4.0059 2.0048 0.5226 34 1 3.8764 0.2292 0.3225 35 1 3.7353 0.4007 -2.0793 36 1 4.9103 1.6998 -1.6890 37 1 2.7050 2.3221 -3.1098 38 1 3.2185 3.4108 -1.7828 39 1 0.9276 1.4513 -1.8739 40 1 1.0633 2.9924 -0.9810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753499348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:23 Heat of formation + Delta-G solvation = -171.076544 kcal Electronic energy + Delta-G solvation = -22819.351389 eV Core-core repulsion = 19213.402508 eV Total energy + Delta-G solvation = -3605.948880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.29131 -39.33246 -38.50254 -36.71081 -35.86384 -34.38997 -32.44998 -30.04959 -29.35409 -28.87097 -27.17756 -26.49419 -23.26535 -22.00656 -21.23752 -20.16270 -19.92078 -18.61681 -17.62171 -16.96941 -16.85413 -16.29815 -15.95811 -15.50222 -15.19546 -15.00939 -14.80999 -14.47997 -14.13686 -13.60500 -13.41788 -13.13191 -12.86424 -12.55051 -12.38923 -12.16290 -12.07984 -11.81729 -11.63214 -11.49337 -11.38968 -11.08570 -10.96170 -10.85000 -10.75926 -10.74457 -10.01370 -9.93487 -9.55839 -9.35313 -8.83321 -8.28725 -6.25676 -4.28879 1.85837 2.21755 3.00707 3.24475 3.31140 3.33789 3.39298 3.75777 4.03841 4.12201 4.29734 4.48519 4.71323 4.90071 4.96185 4.99448 5.01138 5.08239 5.10161 5.12161 5.19004 5.23574 5.26807 5.46129 5.51066 5.53792 5.61903 5.66926 5.77014 5.94053 6.17266 6.69505 6.72271 6.99285 7.07523 7.29986 7.50150 8.03085 8.39367 8.66304 8.78072 9.33390 10.86101 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.003095 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.779799 B = 9044.800739 C = 9282.813983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.352 6.352 3 C 0.129 3.871 4 C 0.441 3.559 5 O -0.502 6.502 6 O -0.316 6.316 7 C 0.043 3.957 8 C 0.502 3.498 9 O -0.533 6.533 10 N -0.700 5.700 11 C 0.222 3.778 12 C -0.546 4.546 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.147 4.147 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.399 0.601 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.268 0.732 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 0.789 -25.361 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.271 6.271 3 C 0.087 3.913 4 C 0.283 3.717 5 O -0.390 6.390 6 O -0.230 6.230 7 C -0.034 4.034 8 C 0.285 3.715 9 O -0.410 6.410 10 N -0.350 5.350 11 C 0.101 3.899 12 C -0.584 4.584 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.184 4.184 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.233 0.767 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.670 0.094 -25.169 25.800 hybrid contribution -0.378 0.053 0.566 0.683 sum 5.292 0.147 -24.602 25.166 Atomic orbital electron populations 1.22919 0.80439 1.03904 1.00083 1.88077 1.20302 1.24410 1.94266 1.22234 0.96618 0.83673 0.88732 1.24692 0.73900 0.87409 0.85708 1.90658 1.46740 1.16066 1.85558 1.86686 1.77784 1.41072 1.17431 1.22886 1.02632 0.93813 0.84108 1.19894 0.78942 0.88667 0.84028 1.90715 1.49896 1.15709 1.84689 1.46069 1.67414 1.12719 1.08831 1.19555 0.96842 0.90869 0.82656 1.21063 1.48669 0.96419 0.92262 0.90141 1.24787 0.93861 0.98572 0.95338 1.69874 1.45843 1.36218 1.00843 0.86815 0.78804 0.85295 0.78785 1.19761 1.20826 1.18454 1.22419 0.89225 1.04438 0.98501 1.22535 0.99397 0.99648 0.94278 1.22323 0.94141 0.99508 0.99793 1.22835 0.99753 1.01357 0.94457 0.93685 0.93514 0.88516 0.88423 0.88296 0.76748 0.95436 0.95856 0.92168 0.89703 0.88610 0.90493 0.90550 0.90820 0.90913 0.89588 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.32 101.05 1.04 1.28 16 2 O -0.35 -4.31 10.13 -48.54 -0.49 -4.80 16 3 C 0.13 1.45 0.99 -90.65 -0.09 1.36 16 4 C 0.44 6.10 5.45 36.00 0.20 6.30 16 5 O -0.50 -7.42 15.28 -18.75 -0.29 -7.71 16 6 O -0.32 -5.04 8.98 -48.27 -0.43 -5.47 16 7 C 0.04 0.64 5.94 36.01 0.21 0.86 16 8 C 0.50 9.67 7.91 -10.99 -0.09 9.59 16 9 O -0.53 -12.44 16.50 -14.11 -0.23 -12.68 16 10 N -0.70 -13.94 5.55 -61.47 -0.34 -14.28 16 11 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 12 C -0.55 -14.80 9.83 -34.44 -0.34 -15.13 16 13 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 16 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.11 -1.03 6.09 -25.03 -0.15 -1.18 16 21 C -0.12 -0.85 6.91 -24.69 -0.17 -1.02 16 22 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 23 C -0.15 -1.31 5.60 -25.61 -0.14 -1.45 16 24 H 0.04 0.52 6.65 -51.93 -0.35 0.18 16 25 H 0.05 0.37 6.61 -51.93 -0.34 0.03 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 30 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 31 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 34 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.67 6.47 -51.93 -0.34 0.33 16 40 H 0.09 0.89 6.69 -51.93 -0.35 0.55 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -33.47 333.02 -6.33 -39.80 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.84 Total: 1.97 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 0.18 Total: 7.05 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.43 Total: -39.74 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.44 Total: -30.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.47 -6.33 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753499348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.281 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds