Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00241 * 2 1 4 4 C 1.50697 * 110.01779 * 60.63965 * 3 2 1 5 5 O 1.20822 * 119.99837 * 214.61469 * 4 3 2 6 6 O 1.34230 * 120.00283 * 34.60680 * 4 3 2 7 7 C 1.45193 * 117.00306 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47550 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99420 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00236 * 179.72297 * 8 7 6 11 11 C 1.46505 * 119.99843 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46979 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00011 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00175 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47332 * 89.99614 * 16 14 12 18 18 H 1.48500 * 109.47255 * 210.00105 * 16 14 12 19 19 H 1.48502 * 109.47203 * 329.99753 * 16 14 12 20 20 C 1.54262 * 110.03231 * 182.03145 * 3 2 1 21 21 C 1.54967 * 104.15991 * 95.75163 * 20 3 2 22 22 C 1.54896 * 102.77738 * 37.88714 * 21 20 3 23 23 C 1.53880 * 110.02555 * 299.24828 * 3 2 1 24 24 H 1.09005 * 109.46900 * 306.17860 * 1 2 3 25 25 H 1.09001 * 109.46664 * 66.17515 * 1 2 3 26 26 H 1.08995 * 109.47229 * 186.17774 * 1 2 3 27 27 H 1.09000 * 109.47380 * 59.99898 * 7 6 4 28 28 H 1.08998 * 109.47278 * 300.00345 * 7 6 4 29 29 H 0.96992 * 119.99939 * 0.02562 * 10 8 7 30 30 H 1.08992 * 109.47095 * 300.00334 * 11 10 8 31 31 H 1.09001 * 109.46578 * 60.00448 * 11 10 8 32 32 H 0.96997 * 120.00170 * 179.97438 * 15 14 12 33 33 H 1.08992 * 110.48637 * 214.39663 * 20 3 2 34 34 H 1.09000 * 110.48961 * 337.04337 * 20 3 2 35 35 H 1.08999 * 110.72237 * 279.57671 * 21 20 3 36 36 H 1.08996 * 110.76646 * 156.22157 * 21 20 3 37 37 H 1.09001 * 110.48360 * 203.40469 * 22 21 20 38 38 H 1.08997 * 110.48646 * 80.76225 * 22 21 20 39 39 H 1.08994 * 110.03614 * 359.95094 * 23 3 2 40 40 H 1.08998 * 110.02873 * 121.38623 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5859 2.0591 1.2341 5 8 1.4037 3.2523 1.1804 6 8 1.4102 1.4049 2.3928 7 6 1.0016 2.1948 3.5405 8 6 0.8558 1.2970 4.7421 9 8 1.0752 0.1085 4.6412 10 7 0.4875 1.8159 5.9303 11 6 0.3452 0.9430 7.0982 12 6 -0.0728 1.7639 8.2909 13 1 -0.2184 2.8292 8.1889 14 6 -0.2694 1.1550 9.5121 15 7 -0.6337 1.8714 10.5531 16 14 -0.0169 -0.6874 9.6886 17 1 1.3950 -0.9604 10.0592 18 1 -0.9168 -1.2112 10.7475 19 1 -0.3283 -1.3555 8.3994 20 6 3.5484 1.1991 -0.0514 21 6 3.8884 1.3447 -1.5563 22 6 2.8707 2.4093 -2.0360 23 6 1.5793 2.0742 -1.2614 24 1 -0.3633 0.6067 0.8296 25 1 -0.3633 0.4151 -0.9401 26 1 -0.3633 -1.0216 0.1106 27 1 0.0471 2.6767 3.3287 28 1 1.7551 2.9554 3.7450 29 1 0.3159 2.7670 6.0119 30 1 -0.4118 0.1855 6.8956 31 1 1.2985 0.4573 7.3070 32 1 -0.7724 1.4430 11.4122 33 1 4.0059 2.0048 0.5226 34 1 3.8764 0.2292 0.3225 35 1 3.7353 0.4007 -2.0793 36 1 4.9103 1.6998 -1.6890 37 1 2.7050 2.3221 -3.1098 38 1 3.2185 3.4108 -1.7828 39 1 0.9276 1.4513 -1.8739 40 1 1.0633 2.9924 -0.9810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753499348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -193.912459 kcal Electronic energy + Delta-G solvation = -22820.341628 eV Core-core repulsion = 19213.402508 eV Total energy + Delta-G solvation = -3606.939120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.31930 -40.72070 -39.63921 -37.82119 -36.67119 -36.23489 -34.49056 -31.37267 -30.29838 -29.77330 -28.72136 -27.33563 -24.54970 -23.64779 -21.84806 -21.78133 -20.86901 -19.63862 -19.28907 -18.34235 -18.00490 -17.59549 -17.15941 -16.88557 -16.42339 -16.13341 -16.08133 -15.62887 -15.38194 -14.94190 -14.67156 -14.43619 -14.19825 -14.06084 -13.78527 -13.44502 -13.11022 -12.90064 -12.72752 -12.58773 -12.39790 -12.12919 -12.07066 -11.95353 -11.94715 -11.70263 -11.67349 -11.45835 -11.05844 -10.94206 -10.77854 -10.08190 -8.41824 -6.49657 0.80171 1.09299 1.32495 1.35438 1.45352 1.47916 2.26631 2.34674 2.55291 2.93529 3.25556 3.40467 3.50350 3.63943 3.94076 3.95886 4.09693 4.23764 4.26817 4.30675 4.38801 4.45844 4.68205 4.71661 4.76209 4.79259 4.95467 4.95862 4.97635 5.05477 5.15731 5.18590 5.21435 5.36050 5.40643 5.86048 6.03538 6.42289 6.50082 6.67752 7.08580 7.23770 8.72764 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.003095 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.779799 B = 9044.800739 C = 9282.813983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.368 6.368 3 C 0.123 3.877 4 C 0.442 3.558 5 O -0.514 6.514 6 O -0.337 6.337 7 C 0.051 3.949 8 C 0.505 3.495 9 O -0.575 6.575 10 N -0.696 5.696 11 C 0.233 3.767 12 C -0.549 4.549 13 H 0.061 0.939 14 C 0.027 3.973 15 N -0.930 5.930 16 Si 0.937 3.063 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.143 4.143 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.413 0.587 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.273 0.727 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 0.559 -27.430 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.286 6.286 3 C 0.082 3.918 4 C 0.284 3.716 5 O -0.403 6.403 6 O -0.252 6.252 7 C -0.026 4.026 8 C 0.291 3.709 9 O -0.455 6.455 10 N -0.348 5.348 11 C 0.109 3.891 12 C -0.587 4.587 13 H 0.080 0.920 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.760 3.240 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.183 1.183 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.181 4.181 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.249 0.751 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.245 -0.099 -27.259 27.965 hybrid contribution -0.575 0.190 1.183 1.329 sum 5.671 0.092 -26.076 26.685 Atomic orbital electron populations 1.23053 0.79737 1.04367 1.00675 1.88055 1.21225 1.25092 1.94270 1.22575 0.97596 0.83422 0.88211 1.25313 0.73180 0.87506 0.85561 1.90643 1.47376 1.16594 1.85641 1.86689 1.78205 1.42070 1.18198 1.22802 1.04760 0.92662 0.82361 1.20515 0.77231 0.88553 0.84634 1.90692 1.51587 1.17837 1.85399 1.45860 1.67608 1.13051 1.08259 1.19178 0.95886 0.90769 0.83230 1.21260 1.48083 0.95939 0.93378 0.92040 1.25587 0.93672 1.02924 0.95135 1.69974 1.47176 1.38168 1.01543 0.85866 0.79179 0.80052 0.78870 1.18943 1.19805 1.18342 1.22523 0.88065 1.04016 1.00532 1.22537 1.00357 1.00048 0.92157 1.22351 0.92945 0.99419 1.00710 1.22861 1.00934 1.00671 0.93616 0.95450 0.91011 0.87714 0.86019 0.85920 0.75099 0.96475 0.96604 0.91767 0.89840 0.89293 0.89941 0.88856 0.88768 0.90927 0.88283 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.32 113.37 1.17 1.51 16 2 O -0.37 -8.63 10.13 -136.26 -1.38 -10.01 16 3 C 0.12 2.63 0.99 -10.82 -0.01 2.62 16 4 C 0.44 11.79 5.45 71.23 0.39 12.18 16 5 O -0.51 -14.53 15.28 21.98 0.34 -14.20 16 6 O -0.34 -10.51 8.98 -42.79 -0.38 -10.89 16 7 C 0.05 1.45 5.94 71.24 0.42 1.88 16 8 C 0.51 19.15 7.91 87.66 0.69 19.85 16 9 O -0.58 -26.88 16.50 15.76 0.26 -26.62 16 10 N -0.70 -27.36 5.55 -466.78 -2.59 -29.95 16 11 C 0.23 11.26 4.50 85.63 0.38 11.64 16 12 C -0.55 -29.90 9.83 25.60 0.25 -29.65 16 13 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 14 C 0.03 1.54 5.47 84.65 0.46 2.00 16 15 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 16 Si 0.94 43.62 27.47 68.60 1.88 45.51 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 20 C -0.11 -2.02 6.09 31.69 0.19 -1.83 16 21 C -0.11 -1.32 6.91 31.92 0.22 -1.10 16 22 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 23 C -0.14 -2.27 5.60 31.32 0.18 -2.10 16 24 H 0.03 0.62 6.65 -2.38 -0.02 0.61 16 25 H 0.07 1.01 6.61 -2.39 -0.02 0.99 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 28 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 29 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 30 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 31 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.08 1.47 7.85 -2.39 -0.02 1.45 16 34 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 1.29 6.47 -2.39 -0.02 1.27 16 40 H 0.08 1.45 6.69 -2.39 -0.02 1.44 16 Total: -1.00 -71.68 333.02 3.22 -68.45 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.23 Total: 16.67 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 4.57 Total: 15.88 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.29 Total: -84.80 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -1.17 Total: -61.72 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -71.68 3.22 -68.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753499348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.458 kcal (2) G-P(sol) polarization free energy of solvation -71.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds