Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35375 * 126.13183 * 2 1 4 4 Cl 1.73597 * 126.04607 * 359.97438 * 3 2 1 5 5 C 1.39930 * 107.90582 * 180.26444 * 3 2 1 6 6 N 1.30849 * 108.21128 * 359.62039 * 5 3 2 7 7 N 1.35037 * 126.13722 * 180.02562 * 2 1 3 8 8 C 1.46504 * 126.04059 * 359.92810 * 7 2 1 9 9 N 1.46898 * 109.47410 * 74.68122 * 8 7 2 10 10 C 1.46895 * 111.00172 * 201.76820 * 9 8 7 11 11 C 1.50697 * 109.47112 * 164.23128 * 10 9 8 12 12 H 1.08001 * 120.00105 * 4.90155 * 11 10 9 13 13 C 1.37871 * 120.00120 * 184.90551 * 11 10 9 14 14 N 1.31519 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00401 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46782 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47250 * 119.99655 * 15 13 11 18 18 H 1.48491 * 109.47282 * 240.00011 * 15 13 11 19 19 C 1.46896 * 110.99725 * 77.81433 * 9 8 7 20 20 C 1.53005 * 109.47177 * 281.05734 * 19 9 8 21 21 C 1.53005 * 109.47017 * 178.53409 * 20 19 9 22 22 C 1.52996 * 109.47478 * 298.53866 * 20 19 9 23 23 H 1.08999 * 109.47495 * 89.97468 * 1 2 3 24 24 H 1.08996 * 109.46759 * 209.97196 * 1 2 3 25 25 H 1.08997 * 109.47368 * 329.96976 * 1 2 3 26 26 H 1.07999 * 125.89453 * 179.77116 * 5 3 2 27 27 H 1.08997 * 109.46893 * 194.68894 * 8 7 2 28 28 H 1.09006 * 109.46442 * 314.68437 * 8 7 2 29 29 H 1.08992 * 109.47378 * 284.23520 * 10 9 8 30 30 H 1.08999 * 109.47167 * 44.23532 * 10 9 8 31 31 H 0.96994 * 120.00217 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.47395 * 41.06032 * 19 9 8 33 33 H 1.09005 * 109.47433 * 161.06291 * 19 9 8 34 34 H 1.09000 * 109.46992 * 58.54106 * 20 19 9 35 35 H 1.09000 * 109.46670 * 60.00500 * 21 20 19 36 36 H 1.09000 * 109.46982 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47296 * 300.00633 * 21 20 19 38 38 H 1.08997 * 109.47028 * 184.90578 * 22 20 19 39 39 H 1.08998 * 109.46954 * 304.90342 * 22 20 19 40 40 H 1.08997 * 109.46814 * 64.90322 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3053 1.0934 0.0000 4 17 1.7740 2.7460 -0.0006 5 6 3.6344 0.6557 -0.0061 6 7 3.6341 -0.6528 -0.0015 7 7 2.3034 -1.0906 -0.0005 8 6 1.8550 -2.4853 0.0004 9 7 1.3554 -2.8399 -1.3347 10 6 0.4492 -3.9942 -1.2683 11 6 -0.3348 -4.0918 -2.5516 12 1 -0.1205 -3.4179 -3.3680 13 6 -1.3258 -5.0412 -2.6835 14 7 -1.5865 -5.8621 -1.6896 15 14 -2.2972 -5.1627 -4.2745 16 1 -1.8134 -4.1337 -5.2296 17 1 -2.1130 -6.5126 -4.8651 18 1 -3.7378 -4.9378 -3.9932 19 6 2.4661 -3.0952 -2.2616 20 6 3.0413 -1.7633 -2.7476 21 6 4.2214 -2.0289 -3.6844 22 6 1.9595 -0.9840 -3.4981 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 4.5094 1.2887 -0.0112 27 1 2.6904 -3.1353 0.2603 28 1 1.0565 -2.6097 0.7319 29 1 1.0309 -4.9051 -1.1277 30 1 -0.2378 -3.8690 -0.4315 31 1 -2.2840 -6.5297 -1.7823 32 1 3.2438 -3.6617 -1.7496 33 1 2.1026 -3.6670 -3.1155 34 1 3.3811 -1.1804 -1.8915 35 1 3.8816 -2.6118 -4.5405 36 1 4.6315 -1.0800 -4.0302 37 1 4.9920 -2.5840 -3.1497 38 1 2.3917 -0.0761 -3.9189 39 1 1.5584 -1.6016 -4.3017 40 1 1.1580 -0.7192 -2.8086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753796083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = 70.478047 kcal Electronic energy + Delta-G solvation = -21593.523598 eV Core-core repulsion = 18471.051226 eV Total energy + Delta-G solvation = -3122.472372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21571 -37.49859 -36.17518 -34.26982 -32.97615 -32.15120 -30.95417 -27.25473 -26.71605 -26.61864 -26.05818 -23.85507 -21.21032 -21.00425 -19.77672 -19.26366 -16.90474 -16.15773 -15.82112 -15.04670 -14.73469 -14.35612 -14.12068 -13.91134 -13.52971 -13.44761 -13.04594 -12.62494 -12.47902 -12.34922 -11.96301 -11.81314 -11.76418 -11.67776 -11.36080 -11.17066 -11.07215 -10.94104 -10.80623 -10.42340 -10.30467 -10.29195 -9.91078 -9.78796 -9.42583 -9.14948 -8.56404 -8.06982 -7.60910 -6.15236 -4.16702 1.95930 2.24468 2.76764 3.02702 3.24081 3.32579 3.37167 4.32235 4.63706 4.78917 4.89475 5.21019 5.23863 5.38398 5.45807 5.51006 5.53503 5.67213 5.71758 5.82622 5.95754 6.06186 6.09974 6.23423 6.30627 6.33579 6.39537 6.47412 6.55509 6.60127 6.90232 6.91913 6.98734 7.09546 7.18064 7.61737 7.77959 7.89719 7.98564 8.30646 8.90816 9.48288 10.95314 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.005248 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.938818 B = 5334.043686 C = 5752.176047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.136 3.864 3 C -0.206 4.206 4 Cl -0.058 7.058 5 C 0.059 3.941 6 N -0.286 5.286 7 N -0.341 5.341 8 C 0.292 3.708 9 N -0.542 5.542 10 C 0.199 3.801 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.070 3.930 20 C -0.110 4.110 21 C -0.141 4.141 22 C -0.126 4.126 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.183 0.817 27 H 0.069 0.931 28 H 0.100 0.900 29 H -0.005 1.005 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 11.535 3.108 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.005 3.995 3 C -0.245 4.245 4 Cl -0.030 7.030 5 C -0.127 4.127 6 N -0.108 5.108 7 N -0.124 5.124 8 C 0.081 3.919 9 N -0.267 5.267 10 C 0.075 3.925 11 C -0.542 4.542 12 H 0.084 0.916 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.058 4.058 20 C -0.129 4.129 21 C -0.198 4.198 22 C -0.183 4.183 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.200 0.800 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.547 10.656 2.988 13.395 hybrid contribution -0.618 0.005 -0.594 0.857 sum 6.930 10.661 2.394 12.939 Atomic orbital electron populations 1.20478 0.86598 1.03374 1.04496 1.20714 0.95018 0.86253 0.97519 1.20352 0.93149 0.85709 1.25265 1.98282 1.90393 1.16282 1.98024 1.23641 0.96397 0.92162 1.00522 1.77328 0.97829 1.11480 1.24131 1.48855 1.02893 1.06233 1.54429 1.22231 0.98496 0.76704 0.94468 1.61831 1.17379 1.42335 1.05177 1.19743 0.89710 0.84104 0.98940 1.21099 1.17254 1.16400 0.99492 0.91599 1.24954 0.97094 0.95570 0.96769 1.69947 1.32265 1.20151 1.31360 0.86448 0.79806 0.77873 0.83375 1.19626 1.21100 1.20968 1.22151 0.90944 0.95778 0.96931 1.21476 0.94904 0.97397 0.99117 1.21758 0.98015 1.00652 0.99424 1.21589 0.98635 0.98112 0.99985 0.88994 0.90457 0.90318 0.80040 0.91302 0.88242 0.98722 0.94667 0.92844 0.95922 0.89785 0.89559 0.93145 0.93432 0.93452 0.94858 0.93367 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.95 36.01 0.36 -0.87 16 2 C 0.14 2.03 6.94 -82.20 -0.57 1.46 16 3 C -0.21 -2.91 6.64 -39.97 -0.27 -3.17 16 4 Cl -0.06 -0.72 28.88 -51.86 -1.50 -2.22 16 5 C 0.06 0.81 11.90 -17.34 -0.21 0.60 16 6 N -0.29 -4.49 10.27 30.64 0.31 -4.18 16 7 N -0.34 -5.39 2.56 -60.09 -0.15 -5.55 16 8 C 0.29 4.83 5.81 -63.31 -0.37 4.46 16 9 N -0.54 -10.36 3.89 -239.99 -0.93 -11.29 16 10 C 0.20 4.62 4.71 -4.98 -0.02 4.59 16 11 C -0.50 -13.00 8.39 -34.44 -0.29 -13.29 16 12 H 0.07 1.72 7.58 -52.49 -0.40 1.32 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -25.08 13.29 55.43 0.74 -24.35 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.07 1.30 4.25 -3.82 -0.02 1.28 16 20 C -0.11 -1.84 2.80 -90.62 -0.25 -2.09 16 21 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 22 C -0.13 -2.17 8.98 37.16 0.33 -1.83 16 23 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.08 1.05 7.46 -51.93 -0.39 0.66 16 25 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 26 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 28 H 0.10 1.55 7.10 -51.93 -0.37 1.18 16 29 H -0.01 -0.13 8.05 -51.93 -0.42 -0.54 16 30 H 0.04 0.86 7.67 -51.93 -0.40 0.46 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.02 0.42 7.64 -51.93 -0.40 0.02 16 33 H 0.08 1.74 6.95 -51.93 -0.36 1.38 16 34 H 0.09 1.48 3.99 -51.93 -0.21 1.27 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.15 7.80 -51.93 -0.40 0.75 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -27.18 339.77 -8.73 -35.91 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.24 Total: -0.04 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.06 Total: -9.15 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.04 Total: -45.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.18 -8.73 -35.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753796083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.391 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds