Wall clock time and date at job start Tue Mar 31 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35375 * 126.13183 * 2 1 4 4 Cl 1.73597 * 126.04607 * 359.97438 * 3 2 1 5 5 C 1.39930 * 107.90582 * 180.26444 * 3 2 1 6 6 N 1.30849 * 108.21128 * 359.62039 * 5 3 2 7 7 N 1.35037 * 126.13722 * 180.02562 * 2 1 3 8 8 C 1.46504 * 126.04059 * 359.92810 * 7 2 1 9 9 N 1.46898 * 109.47410 * 74.68122 * 8 7 2 10 10 C 1.46895 * 111.00172 * 201.76820 * 9 8 7 11 11 C 1.50697 * 109.47112 * 164.23128 * 10 9 8 12 12 H 1.08001 * 120.00105 * 4.90155 * 11 10 9 13 13 C 1.37871 * 120.00120 * 184.90551 * 11 10 9 14 14 N 1.31519 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00401 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46782 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47250 * 119.99655 * 15 13 11 18 18 H 1.48491 * 109.47282 * 240.00011 * 15 13 11 19 19 C 1.46896 * 110.99725 * 77.81433 * 9 8 7 20 20 C 1.53005 * 109.47177 * 281.05734 * 19 9 8 21 21 C 1.53005 * 109.47017 * 178.53409 * 20 19 9 22 22 C 1.52996 * 109.47478 * 298.53866 * 20 19 9 23 23 H 1.08999 * 109.47495 * 89.97468 * 1 2 3 24 24 H 1.08996 * 109.46759 * 209.97196 * 1 2 3 25 25 H 1.08997 * 109.47368 * 329.96976 * 1 2 3 26 26 H 1.07999 * 125.89453 * 179.77116 * 5 3 2 27 27 H 1.08997 * 109.46893 * 194.68894 * 8 7 2 28 28 H 1.09006 * 109.46442 * 314.68437 * 8 7 2 29 29 H 1.08992 * 109.47378 * 284.23520 * 10 9 8 30 30 H 1.08999 * 109.47167 * 44.23532 * 10 9 8 31 31 H 0.96994 * 120.00217 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.47395 * 41.06032 * 19 9 8 33 33 H 1.09005 * 109.47433 * 161.06291 * 19 9 8 34 34 H 1.09000 * 109.46992 * 58.54106 * 20 19 9 35 35 H 1.09000 * 109.46670 * 60.00500 * 21 20 19 36 36 H 1.09000 * 109.46982 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47296 * 300.00633 * 21 20 19 38 38 H 1.08997 * 109.47028 * 184.90578 * 22 20 19 39 39 H 1.08998 * 109.46954 * 304.90342 * 22 20 19 40 40 H 1.08997 * 109.46814 * 64.90322 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3053 1.0934 0.0000 4 17 1.7740 2.7460 -0.0006 5 6 3.6344 0.6557 -0.0061 6 7 3.6341 -0.6528 -0.0015 7 7 2.3034 -1.0906 -0.0005 8 6 1.8550 -2.4853 0.0004 9 7 1.3554 -2.8399 -1.3347 10 6 0.4492 -3.9942 -1.2683 11 6 -0.3348 -4.0918 -2.5516 12 1 -0.1205 -3.4179 -3.3680 13 6 -1.3258 -5.0412 -2.6835 14 7 -1.5865 -5.8621 -1.6896 15 14 -2.2972 -5.1627 -4.2745 16 1 -1.8134 -4.1337 -5.2296 17 1 -2.1130 -6.5126 -4.8651 18 1 -3.7378 -4.9378 -3.9932 19 6 2.4661 -3.0952 -2.2616 20 6 3.0413 -1.7633 -2.7476 21 6 4.2214 -2.0289 -3.6844 22 6 1.9595 -0.9840 -3.4981 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 4.5094 1.2887 -0.0112 27 1 2.6904 -3.1353 0.2603 28 1 1.0565 -2.6097 0.7319 29 1 1.0309 -4.9051 -1.1277 30 1 -0.2378 -3.8690 -0.4315 31 1 -2.2840 -6.5297 -1.7823 32 1 3.2438 -3.6617 -1.7496 33 1 2.1026 -3.6670 -3.1155 34 1 3.3811 -1.1804 -1.8915 35 1 3.8816 -2.6118 -4.5405 36 1 4.6315 -1.0800 -4.0302 37 1 4.9920 -2.5840 -3.1497 38 1 2.3917 -0.0761 -3.9189 39 1 1.5584 -1.6016 -4.3017 40 1 1.1580 -0.7192 -2.8086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753796083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:27 Heat of formation + Delta-G solvation = 57.253604 kcal Electronic energy + Delta-G solvation = -21594.097053 eV Core-core repulsion = 18471.051226 eV Total energy + Delta-G solvation = -3123.045826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38462 -38.99642 -37.23040 -35.72739 -34.74841 -33.46310 -32.28298 -29.07111 -27.94112 -27.82060 -27.44863 -25.54385 -22.83607 -22.20295 -21.08353 -20.57082 -18.57094 -17.69596 -17.24983 -16.52698 -16.38799 -15.64396 -15.38196 -15.33328 -14.93908 -14.77788 -14.27160 -14.12696 -13.89572 -13.69096 -13.41895 -13.18475 -13.03879 -12.99175 -12.77286 -12.67445 -12.61018 -12.53941 -12.18838 -12.08826 -11.78857 -11.48578 -11.43999 -11.39406 -11.10865 -10.61139 -10.35153 -9.29378 -9.14652 -8.19777 -6.27212 0.78056 1.09808 1.40161 1.43107 1.54215 1.67702 1.87380 2.40766 3.09580 3.20068 3.58406 3.76748 3.99560 4.07277 4.16672 4.19006 4.31787 4.34657 4.57574 4.59798 4.71941 4.81959 4.84743 4.91518 4.97985 5.03077 5.07745 5.10702 5.16427 5.20936 5.28726 5.47383 5.54997 5.61696 5.66716 5.87380 6.00880 6.25883 6.45259 6.70012 6.86616 7.41615 8.90628 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.005248 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.938818 B = 5334.043686 C = 5752.176047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.125 3.875 3 C -0.208 4.208 4 Cl -0.042 7.042 5 C 0.067 3.933 6 N -0.307 5.307 7 N -0.351 5.351 8 C 0.297 3.703 9 N -0.541 5.541 10 C 0.216 3.784 11 C -0.509 4.509 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.930 5.930 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.279 1.279 19 C 0.075 3.925 20 C -0.105 4.105 21 C -0.136 4.136 22 C -0.118 4.118 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.213 0.787 27 H 0.071 0.929 28 H 0.106 0.894 29 H -0.029 1.029 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.023 0.977 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 13.221 2.670 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.005 4.005 3 C -0.246 4.246 4 Cl -0.014 7.014 5 C -0.120 4.120 6 N -0.128 5.128 7 N -0.134 5.134 8 C 0.086 3.914 9 N -0.266 5.266 10 C 0.090 3.910 11 C -0.548 4.548 12 H 0.077 0.923 13 C -0.188 4.188 14 N -0.571 5.571 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.205 1.205 19 C -0.053 4.053 20 C -0.124 4.124 21 C -0.194 4.194 22 C -0.175 4.175 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.124 0.876 29 H -0.011 1.011 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.272 12.371 2.552 15.099 hybrid contribution -0.787 -0.419 -0.414 0.983 sum 7.485 11.952 2.138 14.263 Atomic orbital electron populations 1.20472 0.86036 1.04094 1.03969 1.20982 0.95548 0.86360 0.97597 1.20466 0.93276 0.86327 1.24567 1.98290 1.90287 1.14865 1.97940 1.24179 0.97310 0.91765 0.98697 1.77313 0.97640 1.12586 1.25226 1.48644 1.03331 1.05815 1.55570 1.22104 0.98758 0.77540 0.92975 1.61722 1.17595 1.40316 1.06945 1.19355 0.89658 0.84616 0.97335 1.21336 1.17333 1.15951 1.00173 0.92259 1.25698 0.98167 0.95358 0.99624 1.70045 1.33035 1.20891 1.33137 0.85500 0.78470 0.77806 0.79854 1.19228 1.20834 1.20504 1.22102 0.90549 0.96821 0.95864 1.21445 0.95389 0.95966 0.99600 1.21716 0.97194 1.01594 0.98892 1.21497 0.98291 0.98564 0.99161 0.90056 0.90994 0.88371 0.77009 0.91076 0.87637 1.01117 0.96070 0.92745 0.95903 0.92319 0.89291 0.93285 0.91829 0.92904 0.93194 0.94694 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 9.95 71.24 0.71 -1.59 16 2 C 0.13 3.58 6.94 41.41 0.29 3.87 16 3 C -0.21 -5.40 6.64 22.02 0.15 -5.26 16 4 Cl -0.04 -0.94 28.88 -2.72 -0.08 -1.02 16 5 C 0.07 1.66 11.90 85.25 1.01 2.68 16 6 N -0.31 -9.08 10.27 -56.98 -0.59 -9.66 16 7 N -0.35 -10.76 2.56 -344.02 -0.88 -11.64 16 8 C 0.30 9.86 5.81 170.81 0.99 10.85 16 9 N -0.54 -20.98 3.89 -913.19 -3.55 -24.53 16 10 C 0.22 10.31 4.71 85.56 0.40 10.71 16 11 C -0.51 -26.77 8.39 25.60 0.21 -26.55 16 12 H 0.06 3.14 7.58 -2.91 -0.02 3.12 16 13 C 0.01 0.54 5.46 84.65 0.46 1.00 16 14 N -0.93 -52.76 13.29 21.45 0.28 -52.48 16 15 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 C 0.07 2.79 4.25 86.31 0.37 3.16 16 20 C -0.11 -3.41 2.80 -10.79 -0.03 -3.44 16 21 C -0.14 -3.78 9.19 71.98 0.66 -3.12 16 22 C -0.12 -3.94 8.98 71.98 0.65 -3.29 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 1.94 7.46 -2.39 -0.02 1.92 16 25 H 0.10 2.13 7.91 -2.39 -0.02 2.11 16 26 H 0.21 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.07 2.33 7.65 -2.39 -0.02 2.31 16 28 H 0.11 3.33 7.10 -2.38 -0.02 3.31 16 29 H -0.03 -1.50 8.05 -2.39 -0.02 -1.52 16 30 H 0.02 1.07 7.67 -2.39 -0.02 1.05 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.02 0.84 7.64 -2.39 -0.02 0.83 16 33 H 0.06 2.48 6.95 -2.38 -0.02 2.47 16 34 H 0.09 2.90 3.99 -2.39 -0.01 2.89 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.67 7.80 -2.39 -0.02 1.65 16 Total: -1.00 -57.30 339.77 4.10 -53.20 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.02 Total: 12.32 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.87 Total: -10.99 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.74 Total: -98.31 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -57.30 4.10 -53.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753796083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.451 kcal (2) G-P(sol) polarization free energy of solvation -57.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds