Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47146 * 2 1 4 4 C 1.52995 * 109.47311 * 120.00498 * 2 1 3 5 5 C 1.50707 * 109.47161 * 180.64141 * 4 2 1 6 6 O 1.20819 * 120.00090 * 354.39128 * 5 4 2 7 7 O 1.34230 * 119.99762 * 174.39121 * 5 4 2 8 8 C 1.45204 * 116.99600 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46978 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99713 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99800 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47034 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99528 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99685 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00335 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47169 * 90.00000 * 17 15 13 19 19 H 1.48503 * 109.47078 * 210.00075 * 17 15 13 20 20 H 1.48499 * 109.47266 * 329.99932 * 17 15 13 21 21 C 1.53005 * 109.47089 * 240.00174 * 2 1 3 22 22 C 1.53002 * 117.49810 * 128.62012 * 21 2 1 23 23 C 1.53007 * 60.00157 * 252.51309 * 22 21 2 24 24 H 1.09000 * 109.46601 * 304.79576 * 1 2 3 25 25 H 1.08993 * 109.46988 * 64.79404 * 1 2 3 26 26 H 1.08995 * 109.46752 * 184.79917 * 1 2 3 27 27 H 0.96701 * 114.00149 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47637 * 60.63879 * 4 2 1 29 29 H 1.09004 * 109.47109 * 300.63314 * 4 2 1 30 30 H 1.09001 * 109.47157 * 300.00327 * 8 7 5 31 31 H 1.08994 * 109.47229 * 60.00259 * 8 7 5 32 32 H 0.96999 * 120.00674 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46720 * 300.00253 * 12 11 9 34 34 H 1.08994 * 109.47095 * 59.99876 * 12 11 9 35 35 H 0.97001 * 120.00216 * 180.02562 * 16 15 13 36 36 H 1.08997 * 115.55121 * 274.33284 * 21 2 1 37 37 H 1.08995 * 117.49899 * 359.97438 * 22 21 2 38 38 H 1.08997 * 117.49561 * 145.02358 * 22 21 2 39 39 H 1.09002 * 117.49539 * 252.51515 * 23 22 21 40 40 H 1.08996 * 117.50039 * 107.48648 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5470 -0.7075 1.2571 6 8 4.1521 -0.2663 0.3090 7 8 4.2169 -1.1855 2.3175 8 6 5.6670 -1.1411 2.2558 9 6 6.2416 -1.7163 3.5247 10 8 5.5019 -2.1239 4.3950 11 7 7.5775 -1.7786 3.6917 12 6 8.1361 -2.3383 4.9251 13 6 9.6411 -2.2921 4.8611 14 1 10.1323 -1.8868 3.9888 15 6 10.3908 -2.7682 5.9157 16 7 11.7041 -2.7274 5.8601 17 14 9.5412 -3.4698 7.4241 18 1 9.3297 -4.9280 7.2397 19 1 10.3890 -3.2401 8.6215 20 1 8.2294 -2.7991 7.6103 21 6 2.0400 -0.7212 -1.2493 22 6 3.0741 0.0052 -2.1117 23 6 1.6357 -0.1494 -2.6097 24 1 -0.3632 0.5865 0.8439 25 1 -0.3633 0.4376 -0.9298 26 1 -0.3632 -1.0240 0.0860 27 1 2.9703 1.4236 -0.0004 28 1 1.6862 -1.7522 1.2434 29 1 1.6675 -0.2142 2.1392 30 1 6.0124 -1.7258 1.4032 31 1 5.9944 -0.1075 2.1441 32 1 8.1691 -1.4536 2.9952 33 1 7.7909 -1.7540 5.7781 34 1 7.8084 -3.3718 5.0361 35 1 12.2317 -3.0627 6.6018 36 1 2.1267 -1.8044 -1.1644 37 1 3.3908 0.9971 -1.7894 38 1 3.8415 -0.6000 -2.5942 39 1 1.4568 -0.8565 -3.4197 40 1 1.0063 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756312984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -150.143444 kcal Electronic energy + Delta-G solvation = -22422.701450 eV Core-core repulsion = 18817.660297 eV Total energy + Delta-G solvation = -3605.041153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11357 -39.45970 -38.63772 -36.38797 -35.27005 -34.41887 -32.69311 -32.45943 -29.89767 -28.65241 -26.98512 -23.90129 -22.49249 -22.27097 -21.31615 -20.20300 -20.10123 -18.00387 -17.67497 -17.20842 -16.93676 -16.69770 -15.95851 -15.62334 -15.24654 -15.04999 -14.51857 -14.22581 -13.66989 -13.47046 -13.09104 -13.04558 -12.77314 -12.54436 -12.50101 -12.40643 -12.36431 -12.07596 -11.54946 -11.40360 -11.10714 -10.94641 -10.85657 -10.78211 -10.68451 -10.18734 -10.06049 -10.02981 -9.57674 -9.39344 -8.84915 -8.31379 -6.27006 -4.30321 1.95462 2.27590 2.97798 3.23045 3.30027 3.37675 3.56281 3.80186 3.87665 4.23007 4.28286 4.36717 4.53604 4.74561 4.82386 4.94974 5.00536 5.06994 5.08222 5.12124 5.17206 5.19595 5.26201 5.45715 5.47355 5.52586 5.78844 5.83429 5.94103 6.02225 6.20269 6.69293 6.97145 7.04758 7.28180 7.36828 7.53591 8.00996 8.37403 8.63995 8.75932 9.31916 10.84749 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041690 B = 0.002762 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.463848 B =10134.533811 C =10551.063873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 O -0.560 6.560 4 C -0.142 4.142 5 C 0.463 3.537 6 O -0.505 6.505 7 O -0.329 6.329 8 C 0.050 3.950 9 C 0.501 3.499 10 O -0.537 6.537 11 N -0.699 5.699 12 C 0.222 3.778 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.182 4.182 22 C -0.143 4.143 23 C -0.179 4.179 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.384 0.616 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.399 0.601 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.269 0.731 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.742 5.031 -14.607 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.134 3.866 3 O -0.370 6.370 4 C -0.180 4.180 5 C 0.307 3.693 6 O -0.394 6.394 7 O -0.244 6.244 8 C -0.028 4.028 9 C 0.284 3.716 10 O -0.414 6.414 11 N -0.350 5.350 12 C 0.100 3.900 13 C -0.584 4.584 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.201 4.201 22 C -0.180 4.180 23 C -0.216 4.216 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.236 0.764 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.233 0.767 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.485 4.938 -14.109 26.174 hybrid contribution 0.924 -0.502 0.428 1.135 sum -20.561 4.437 -13.681 25.093 Atomic orbital electron populations 1.21726 0.91357 1.02714 1.03470 1.20436 0.94508 0.81765 0.89920 1.86471 1.28575 1.25330 1.96663 1.22256 0.87954 1.05380 1.02377 1.23749 0.91692 0.73940 0.79953 1.90632 1.70382 1.43546 1.34880 1.86573 1.20672 1.74850 1.42263 1.22823 0.77679 1.03570 0.98702 1.19943 0.83593 0.80403 0.87651 1.90703 1.59062 1.48091 1.43585 1.46073 1.04688 1.61926 1.22271 1.19559 0.94513 0.93880 0.82005 1.21059 0.88129 1.43623 1.05625 0.90129 1.24791 0.94727 0.94753 0.98301 1.69875 1.04621 1.45705 1.32531 0.86813 0.80256 0.80197 0.82410 1.19787 1.20813 1.18468 1.22903 1.05931 0.99292 0.91937 1.22736 0.91553 1.02063 1.01656 1.22991 0.99339 1.03025 0.96245 0.91465 0.91163 0.90788 0.76372 0.86488 0.86640 0.88296 0.88250 0.76704 0.95412 0.95883 0.92157 0.87846 0.88378 0.89218 0.89215 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.75 37.16 0.33 -0.58 16 2 C 0.17 1.48 0.92 -90.62 -0.08 1.40 16 3 O -0.56 -5.79 12.10 -52.17 -0.63 -6.42 16 4 C -0.14 -1.20 5.07 -27.88 -0.14 -1.34 16 5 C 0.46 5.28 7.45 36.01 0.27 5.55 16 6 O -0.51 -6.02 11.14 -24.67 -0.27 -6.29 16 7 O -0.33 -4.64 9.76 -45.90 -0.45 -5.09 16 8 C 0.05 0.68 5.94 36.01 0.21 0.90 16 9 C 0.50 9.30 7.91 -10.99 -0.09 9.21 16 10 O -0.54 -12.17 16.50 -14.10 -0.23 -12.41 16 11 N -0.70 -13.58 5.55 -61.47 -0.34 -13.92 16 12 C 0.22 5.32 4.50 -5.19 -0.02 5.29 16 13 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 14 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 17 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 21 C -0.18 -1.57 4.03 -90.61 -0.37 -1.93 16 22 C -0.14 -1.33 7.94 -26.73 -0.21 -1.54 16 23 C -0.18 -1.43 9.61 -26.72 -0.26 -1.69 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.47 7.13 -51.93 -0.37 0.10 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.38 3.93 5.33 45.56 0.24 4.17 16 28 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 32 H 0.40 6.65 8.32 -40.82 -0.34 6.32 16 33 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 34 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.10 0.96 6.30 -51.93 -0.33 0.64 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.77 7.58 -51.93 -0.39 0.37 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.55 333.48 -6.93 -39.48 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.34 Total: 6.18 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.80 Total: 2.35 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.43 Total: -39.21 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.59 Total: -30.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.55 -6.93 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756312984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.666 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds