Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47146 * 2 1 4 4 C 1.52995 * 109.47311 * 120.00498 * 2 1 3 5 5 C 1.50707 * 109.47161 * 180.64141 * 4 2 1 6 6 O 1.20819 * 120.00090 * 354.39128 * 5 4 2 7 7 O 1.34230 * 119.99762 * 174.39121 * 5 4 2 8 8 C 1.45204 * 116.99600 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46978 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99713 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99800 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47034 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99528 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99685 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00335 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47169 * 90.00000 * 17 15 13 19 19 H 1.48503 * 109.47078 * 210.00075 * 17 15 13 20 20 H 1.48499 * 109.47266 * 329.99932 * 17 15 13 21 21 C 1.53005 * 109.47089 * 240.00174 * 2 1 3 22 22 C 1.53002 * 117.49810 * 128.62012 * 21 2 1 23 23 C 1.53007 * 60.00157 * 252.51309 * 22 21 2 24 24 H 1.09000 * 109.46601 * 304.79576 * 1 2 3 25 25 H 1.08993 * 109.46988 * 64.79404 * 1 2 3 26 26 H 1.08995 * 109.46752 * 184.79917 * 1 2 3 27 27 H 0.96701 * 114.00149 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47637 * 60.63879 * 4 2 1 29 29 H 1.09004 * 109.47109 * 300.63314 * 4 2 1 30 30 H 1.09001 * 109.47157 * 300.00327 * 8 7 5 31 31 H 1.08994 * 109.47229 * 60.00259 * 8 7 5 32 32 H 0.96999 * 120.00674 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46720 * 300.00253 * 12 11 9 34 34 H 1.08994 * 109.47095 * 59.99876 * 12 11 9 35 35 H 0.97001 * 120.00216 * 180.02562 * 16 15 13 36 36 H 1.08997 * 115.55121 * 274.33284 * 21 2 1 37 37 H 1.08995 * 117.49899 * 359.97438 * 22 21 2 38 38 H 1.08997 * 117.49561 * 145.02358 * 22 21 2 39 39 H 1.09002 * 117.49539 * 252.51515 * 23 22 21 40 40 H 1.08996 * 117.50039 * 107.48648 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5470 -0.7075 1.2571 6 8 4.1521 -0.2663 0.3090 7 8 4.2169 -1.1855 2.3175 8 6 5.6670 -1.1411 2.2558 9 6 6.2416 -1.7163 3.5247 10 8 5.5019 -2.1239 4.3950 11 7 7.5775 -1.7786 3.6917 12 6 8.1361 -2.3383 4.9251 13 6 9.6411 -2.2921 4.8611 14 1 10.1323 -1.8868 3.9888 15 6 10.3908 -2.7682 5.9157 16 7 11.7041 -2.7274 5.8601 17 14 9.5412 -3.4698 7.4241 18 1 9.3297 -4.9280 7.2397 19 1 10.3890 -3.2401 8.6215 20 1 8.2294 -2.7991 7.6103 21 6 2.0400 -0.7212 -1.2493 22 6 3.0741 0.0052 -2.1117 23 6 1.6357 -0.1494 -2.6097 24 1 -0.3632 0.5865 0.8439 25 1 -0.3633 0.4376 -0.9298 26 1 -0.3632 -1.0240 0.0860 27 1 2.9703 1.4236 -0.0004 28 1 1.6862 -1.7522 1.2434 29 1 1.6675 -0.2142 2.1392 30 1 6.0124 -1.7258 1.4032 31 1 5.9944 -0.1075 2.1441 32 1 8.1691 -1.4536 2.9952 33 1 7.7909 -1.7540 5.7781 34 1 7.8084 -3.3718 5.0361 35 1 12.2317 -3.0627 6.6018 36 1 2.1267 -1.8044 -1.1644 37 1 3.3908 0.9971 -1.7894 38 1 3.8415 -0.6000 -2.5942 39 1 1.4568 -0.8565 -3.4197 40 1 1.0063 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756312984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -172.687456 kcal Electronic energy + Delta-G solvation = -22423.679032 eV Core-core repulsion = 18817.660297 eV Total energy + Delta-G solvation = -3606.018735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00597 -40.67288 -39.72657 -37.37523 -36.21151 -35.96990 -34.47371 -33.37205 -31.23599 -29.72694 -28.37549 -24.66724 -24.05408 -23.14796 -22.25581 -21.72430 -20.82122 -19.39729 -18.84356 -18.18102 -17.98998 -17.87037 -17.15086 -16.97804 -16.45836 -16.35060 -15.81942 -15.49550 -14.91898 -14.64537 -14.46057 -14.21166 -13.90042 -13.72752 -13.49758 -13.31160 -13.09248 -13.08705 -12.95419 -12.71483 -12.23230 -12.06463 -11.94262 -11.87395 -11.74127 -11.67461 -11.35966 -10.99667 -10.93231 -10.86296 -10.73155 -10.05334 -8.40921 -6.48654 1.09128 1.25564 1.33256 1.36714 1.47484 1.51192 2.27515 2.48806 2.91275 2.94504 3.22567 3.53574 3.62330 3.73668 3.76295 4.03215 4.06035 4.11853 4.18768 4.36353 4.44393 4.58485 4.70269 4.73929 4.84132 4.90810 4.96796 4.99268 5.13209 5.21755 5.27367 5.31209 5.33380 5.35760 5.39377 6.04673 6.50730 6.55569 6.68477 6.73863 7.10790 7.26441 8.73648 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041690 B = 0.002762 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.463848 B =10134.533811 C =10551.063873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 O -0.573 6.573 4 C -0.139 4.139 5 C 0.462 3.538 6 O -0.512 6.512 7 O -0.349 6.349 8 C 0.060 3.940 9 C 0.503 3.497 10 O -0.579 6.579 11 N -0.698 5.698 12 C 0.232 3.768 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.937 3.063 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.182 4.182 22 C -0.157 4.157 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.381 0.619 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.413 0.587 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.632 4.768 -15.064 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.131 3.869 3 O -0.383 6.383 4 C -0.176 4.176 5 C 0.307 3.693 6 O -0.401 6.401 7 O -0.265 6.265 8 C -0.017 4.017 9 C 0.289 3.711 10 O -0.460 6.460 11 N -0.349 5.349 12 C 0.109 3.891 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.200 4.200 22 C -0.194 4.194 23 C -0.206 4.206 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.234 0.766 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.249 0.751 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.380 4.694 -14.612 27.967 hybrid contribution 1.506 -0.373 0.472 1.622 sum -21.874 4.320 -14.139 26.402 Atomic orbital electron populations 1.21767 0.89852 1.04072 1.03478 1.20632 0.95541 0.80949 0.89807 1.86471 1.28430 1.26675 1.96727 1.22393 0.85628 1.06869 1.02715 1.24309 0.92583 0.73309 0.79149 1.90640 1.70720 1.43766 1.34949 1.86572 1.20522 1.75629 1.43747 1.22684 0.78110 1.04786 0.96091 1.20666 0.82642 0.79130 0.88692 1.90679 1.59876 1.49862 1.45536 1.45872 1.05687 1.61970 1.21361 1.19169 0.92708 0.93553 0.83700 1.21270 0.89679 1.42756 1.04900 0.92066 1.25604 0.95265 0.95236 1.01319 1.69979 1.06054 1.47112 1.33784 0.85857 0.79216 0.79736 0.79094 1.18932 1.19929 1.18277 1.22962 1.05387 0.99464 0.92234 1.22698 0.92207 1.01735 1.02775 1.23013 0.98121 1.03100 0.96339 0.91333 0.91308 0.88790 0.76646 0.84277 0.85746 0.85958 0.85938 0.75101 0.96529 0.96599 0.91806 0.87369 0.89321 0.89666 0.88073 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.75 71.98 0.63 -0.85 16 2 C 0.17 2.56 0.92 -10.79 -0.01 2.55 16 3 O -0.57 -11.14 12.10 -132.78 -1.61 -12.74 16 4 C -0.14 -2.01 5.07 29.85 0.15 -1.86 16 5 C 0.46 9.62 7.45 71.24 0.53 10.15 16 6 O -0.51 -11.31 11.14 27.65 0.31 -11.00 16 7 O -0.35 -9.19 9.76 -45.06 -0.44 -9.63 16 8 C 0.06 1.53 5.94 71.24 0.42 1.95 16 9 C 0.50 18.07 7.91 87.66 0.69 18.76 16 10 O -0.58 -25.91 16.50 15.77 0.26 -25.65 16 11 N -0.70 -26.52 5.55 -466.78 -2.59 -29.11 16 12 C 0.23 11.03 4.50 85.63 0.38 11.42 16 13 C -0.55 -29.55 9.83 25.60 0.25 -29.29 16 14 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 15 C 0.03 1.46 5.47 84.65 0.46 1.92 16 16 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 17 Si 0.94 43.20 27.47 68.60 1.88 45.08 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 21 C -0.18 -2.79 4.03 -10.79 -0.04 -2.83 16 22 C -0.16 -2.76 7.94 30.60 0.24 -2.51 16 23 C -0.17 -2.42 9.61 30.60 0.29 -2.13 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.78 7.13 -2.39 -0.02 0.77 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.38 7.52 5.33 -74.06 -0.40 7.13 16 28 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.12 2.57 8.13 -2.39 -0.02 2.55 16 31 H 0.12 2.58 8.13 -2.39 -0.02 2.56 16 32 H 0.41 13.36 8.32 -92.71 -0.77 12.59 16 33 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 34 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.11 1.56 8.11 -2.39 -0.02 1.54 16 37 H 0.09 1.71 6.30 -2.39 -0.02 1.69 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.37 7.58 -2.39 -0.02 1.36 16 Total: -1.00 -69.50 333.48 1.97 -67.53 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.16 Total: 22.82 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.01 Total: 7.29 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.29 Total: -83.70 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.48 Total: -59.01 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Total: -69.50 1.97 -67.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756312984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.159 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds