Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.20827 * 119.99600 * 359.97438 * 5 4 2 7 7 O 1.34224 * 120.00309 * 180.02562 * 5 4 2 8 8 C 1.45203 * 117.00335 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47338 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00264 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00578 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47188 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00688 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99818 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46920 * 59.99531 * 17 15 13 19 19 H 1.48497 * 109.47373 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46964 * 299.99539 * 17 15 13 21 21 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 22 22 C 1.53001 * 117.51964 * 231.28841 * 21 2 1 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 2 24 24 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 25 25 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 26 26 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 27 27 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 30 30 H 1.09005 * 109.47155 * 300.00248 * 8 7 5 31 31 H 1.09004 * 109.46913 * 59.99525 * 8 7 5 32 32 H 0.97001 * 120.00284 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47338 * 300.00496 * 12 11 9 34 34 H 1.09005 * 109.46704 * 59.99882 * 12 11 9 35 35 H 0.97000 * 120.00003 * 180.02562 * 16 15 13 36 36 H 1.09002 * 115.54973 * 85.58625 * 21 2 1 37 37 H 1.09001 * 117.49733 * 214.97413 * 22 21 2 38 38 H 1.08995 * 117.49577 * 359.97438 * 22 21 2 39 39 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 40 40 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8428 0.9712 -2.3689 7 8 1.8617 -0.4697 -3.6988 8 6 1.3422 0.2641 -4.8389 9 6 1.8068 -0.3926 -6.1131 10 8 2.5065 -1.3821 -6.0652 11 7 1.4440 0.1189 -7.3060 12 6 1.8952 -0.5199 -8.5449 13 6 1.3561 0.2419 -9.7281 14 1 0.7394 1.1148 -9.5730 15 6 1.6501 -0.1756 -11.0089 16 7 2.4015 -1.2383 -11.1978 17 14 0.9825 0.7690 -12.4756 18 1 1.4791 2.1677 -12.4312 19 1 1.4397 0.1214 -13.7313 20 1 -0.5019 0.7690 -12.4303 21 6 2.0400 -0.7212 1.2493 22 6 3.0757 0.0040 2.1109 23 6 1.6373 -0.1482 2.6097 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9702 1.4238 0.0004 28 1 3.1301 -0.7208 -1.2493 29 1 1.6767 -1.7489 -1.2492 30 1 0.2527 0.2634 -4.8057 31 1 1.7060 1.2911 -4.8063 32 1 0.8841 0.9100 -7.3445 33 1 2.9846 -0.5189 -8.5783 34 1 1.5317 -1.5471 -8.5772 35 1 2.6087 -1.5318 -12.0989 36 1 2.1253 -1.8046 1.1648 37 1 3.8425 -0.6023 2.5932 38 1 3.3942 0.9949 1.7876 39 1 1.0093 0.7428 2.6145 40 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756313086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = -151.113119 kcal Electronic energy + Delta-G solvation = -22097.494777 eV Core-core repulsion = 18492.411576 eV Total energy + Delta-G solvation = -3605.083201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87066 -39.43585 -38.57667 -36.39185 -35.28922 -34.25287 -32.53695 -32.40243 -29.61234 -28.27929 -26.55627 -24.23747 -22.68916 -22.60651 -21.05159 -20.22299 -19.93272 -17.91385 -17.53987 -17.12649 -16.77958 -16.31993 -15.80476 -15.42827 -15.14362 -14.97360 -14.63932 -14.27494 -14.08932 -13.27553 -13.09824 -12.98789 -12.57944 -12.42143 -12.18054 -12.12862 -11.99229 -11.82874 -11.66653 -11.34898 -11.03945 -10.90771 -10.89573 -10.65102 -10.64505 -10.35321 -10.33590 -10.11115 -9.46445 -9.17841 -8.78583 -7.99672 -6.20189 -4.27741 2.16362 2.40726 3.17440 3.23912 3.28760 3.30196 3.33393 3.83604 4.00800 4.19058 4.29297 4.36371 4.50109 4.61601 4.74471 4.90255 4.93288 5.15707 5.15977 5.22062 5.24954 5.26820 5.34615 5.38873 5.47110 5.54754 5.72712 5.74057 5.82246 6.08091 6.47466 7.21722 7.30181 7.37106 7.44813 7.58994 7.74775 7.91280 8.49334 8.70306 8.95723 9.38593 10.89883 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.055169 B = 0.002418 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.408446 B =11575.968012 C =11811.915854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.177 3.823 3 O -0.541 6.541 4 C -0.139 4.139 5 C 0.459 3.541 6 O -0.489 6.489 7 O -0.333 6.333 8 C 0.050 3.950 9 C 0.499 3.501 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.251 3.749 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.188 4.188 22 C -0.178 4.178 23 C -0.165 4.165 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.370 0.630 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 2.458 25.351 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.136 3.864 3 O -0.347 6.347 4 C -0.177 4.177 5 C 0.301 3.699 6 O -0.377 6.377 7 O -0.248 6.248 8 C -0.028 4.028 9 C 0.282 3.718 10 O -0.413 6.413 11 N -0.357 5.357 12 C 0.131 3.869 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.206 4.206 22 C -0.215 4.215 23 C -0.202 4.202 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.218 0.782 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.226 0.774 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.719 2.036 25.196 25.337 hybrid contribution 0.009 0.684 -0.940 1.163 sum -1.709 2.720 24.256 24.468 Atomic orbital electron populations 1.21998 0.91700 1.02364 1.04747 1.20415 0.95444 0.81499 0.89065 1.86716 1.26135 1.25207 1.96618 1.22147 1.03929 1.01754 0.89897 1.23500 0.78261 0.83293 0.84854 1.90652 1.34888 1.25257 1.86858 1.86563 1.69246 1.54772 1.14225 1.22832 1.00280 0.96145 0.83527 1.19915 0.82003 0.85279 0.84586 1.90705 1.37685 1.25707 1.87191 1.46372 1.51809 1.31279 1.06239 1.19169 0.95867 0.93705 0.78139 1.21172 1.33466 1.13221 0.90565 0.91808 1.24957 0.94849 0.95090 0.99105 1.69962 1.36103 1.23620 1.22514 0.86441 0.79281 0.79834 0.81160 1.20027 1.21045 1.20023 1.23052 1.05276 0.99876 0.92400 1.23001 0.92724 1.02241 1.03554 1.22893 0.98009 1.03244 0.96043 0.91811 0.89250 0.91558 0.78187 0.87244 0.86672 0.88600 0.88576 0.77419 0.95275 0.95267 0.92311 0.86918 0.88675 0.88150 0.88274 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.36 37.16 0.31 -1.12 16 2 C 0.18 1.52 0.79 -90.62 -0.07 1.45 16 3 O -0.54 -5.34 11.04 -53.49 -0.59 -5.93 16 4 C -0.14 -1.24 5.05 -27.88 -0.14 -1.38 16 5 C 0.46 5.95 7.52 36.01 0.27 6.22 16 6 O -0.49 -7.22 12.71 -25.02 -0.32 -7.54 16 7 O -0.33 -5.18 9.75 -45.89 -0.45 -5.62 16 8 C 0.05 0.76 5.94 36.00 0.21 0.97 16 9 C 0.50 10.03 7.91 -10.99 -0.09 9.95 16 10 O -0.54 -13.10 16.50 -14.11 -0.23 -13.33 16 11 N -0.71 -14.66 5.55 -61.48 -0.34 -15.00 16 12 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 13 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.82 13.29 55.43 0.74 -25.09 16 17 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C -0.19 -1.24 5.15 -90.61 -0.47 -1.70 16 22 C -0.18 -1.05 9.74 -26.73 -0.26 -1.31 16 23 C -0.17 -1.06 9.67 -26.73 -0.26 -1.32 16 24 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 25 H 0.09 1.07 5.52 -51.93 -0.29 0.79 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.37 2.49 7.56 45.56 0.34 2.83 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 32 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.11 0.64 8.11 -51.93 -0.42 0.21 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.56 6.38 -51.93 -0.33 0.23 16 39 H 0.10 0.73 7.61 -51.93 -0.40 0.33 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -34.23 339.95 -7.17 -41.40 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.15 Total: 5.32 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.93 Total: 5.01 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.40 Total: -40.09 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.59 Total: -32.43 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.23 -7.17 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756313086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.708 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds