Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.20827 * 119.99600 * 359.97438 * 5 4 2 7 7 O 1.34224 * 120.00309 * 180.02562 * 5 4 2 8 8 C 1.45203 * 117.00335 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47338 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00264 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00578 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47188 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00688 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99818 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46920 * 59.99531 * 17 15 13 19 19 H 1.48497 * 109.47373 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46964 * 299.99539 * 17 15 13 21 21 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 22 22 C 1.53001 * 117.51964 * 231.28841 * 21 2 1 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 2 24 24 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 25 25 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 26 26 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 27 27 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 30 30 H 1.09005 * 109.47155 * 300.00248 * 8 7 5 31 31 H 1.09004 * 109.46913 * 59.99525 * 8 7 5 32 32 H 0.97001 * 120.00284 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47338 * 300.00496 * 12 11 9 34 34 H 1.09005 * 109.46704 * 59.99882 * 12 11 9 35 35 H 0.97000 * 120.00003 * 180.02562 * 16 15 13 36 36 H 1.09002 * 115.54973 * 85.58625 * 21 2 1 37 37 H 1.09001 * 117.49733 * 214.97413 * 22 21 2 38 38 H 1.08995 * 117.49577 * 359.97438 * 22 21 2 39 39 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 40 40 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8428 0.9712 -2.3689 7 8 1.8617 -0.4697 -3.6988 8 6 1.3422 0.2641 -4.8389 9 6 1.8068 -0.3926 -6.1131 10 8 2.5065 -1.3821 -6.0652 11 7 1.4440 0.1189 -7.3060 12 6 1.8952 -0.5199 -8.5449 13 6 1.3561 0.2419 -9.7281 14 1 0.7394 1.1148 -9.5730 15 6 1.6501 -0.1756 -11.0089 16 7 2.4015 -1.2383 -11.1978 17 14 0.9825 0.7690 -12.4756 18 1 1.4791 2.1677 -12.4312 19 1 1.4397 0.1214 -13.7313 20 1 -0.5019 0.7690 -12.4303 21 6 2.0400 -0.7212 1.2493 22 6 3.0757 0.0040 2.1109 23 6 1.6373 -0.1482 2.6097 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9702 1.4238 0.0004 28 1 3.1301 -0.7208 -1.2493 29 1 1.6767 -1.7489 -1.2492 30 1 0.2527 0.2634 -4.8057 31 1 1.7060 1.2911 -4.8063 32 1 0.8841 0.9100 -7.3445 33 1 2.9846 -0.5189 -8.5783 34 1 1.5317 -1.5471 -8.5772 35 1 2.6087 -1.5318 -12.0989 36 1 2.1253 -1.8046 1.1648 37 1 3.8425 -0.6023 2.5932 38 1 3.3942 0.9949 1.7876 39 1 1.0093 0.7428 2.6145 40 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756313086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -175.310647 kcal Electronic energy + Delta-G solvation = -22098.544061 eV Core-core repulsion = 18492.411576 eV Total energy + Delta-G solvation = -3606.132485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88404 -40.59224 -39.81361 -37.49963 -36.19002 -35.91481 -34.42380 -33.25958 -30.98047 -29.43979 -28.18824 -25.07923 -24.45120 -23.13041 -22.05275 -21.64071 -20.86327 -19.26048 -18.77025 -18.12645 -17.90107 -17.60040 -17.05122 -16.83372 -16.51640 -16.32338 -15.76553 -15.57338 -15.01962 -14.59665 -14.52112 -14.05448 -13.80671 -13.68348 -13.64230 -13.22016 -12.96715 -12.88229 -12.81154 -12.68319 -12.30861 -12.24647 -11.98240 -11.81152 -11.53695 -11.49362 -11.37402 -10.98141 -10.91676 -10.81208 -10.78363 -9.94018 -8.29982 -6.46732 1.17239 1.29003 1.44537 1.47592 1.54605 1.56101 2.33807 2.57063 2.85228 3.05021 3.29752 3.52013 3.60239 3.71684 3.94661 3.97358 4.05785 4.08263 4.17548 4.28235 4.39803 4.56057 4.73881 4.82339 4.89358 4.96347 5.06169 5.09253 5.21008 5.25182 5.28004 5.31920 5.40855 5.51783 5.62976 5.81419 6.61510 6.67353 6.79310 6.83344 7.19664 7.34791 8.81857 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.055169 B = 0.002418 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.408446 B =11575.968012 C =11811.915854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 O -0.562 6.562 4 C -0.136 4.136 5 C 0.458 3.542 6 O -0.509 6.509 7 O -0.353 6.353 8 C 0.062 3.938 9 C 0.499 3.501 10 O -0.584 6.584 11 N -0.700 5.700 12 C 0.267 3.733 13 C -0.558 4.558 14 H 0.086 0.914 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.985 3.015 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.185 4.185 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.382 0.618 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.412 0.588 33 H -0.008 1.008 34 H -0.007 1.007 35 H 0.269 0.731 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 3.505 26.300 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.137 3.863 3 O -0.370 6.370 4 C -0.173 4.173 5 C 0.302 3.698 6 O -0.397 6.397 7 O -0.269 6.269 8 C -0.015 4.015 9 C 0.285 3.715 10 O -0.464 6.464 11 N -0.351 5.351 12 C 0.144 3.856 13 C -0.596 4.596 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.568 5.568 17 Si 0.808 3.192 18 H -0.187 1.187 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.204 4.204 22 C -0.210 4.210 23 C -0.208 4.208 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.232 0.768 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.248 0.752 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.402 3.126 26.188 26.483 hybrid contribution 0.227 0.347 -1.143 1.216 sum -2.175 3.473 25.045 25.378 Atomic orbital electron populations 1.21998 0.92726 1.02966 1.03282 1.20418 0.94765 0.81257 0.89815 1.86685 1.27414 1.26168 1.96716 1.22332 1.05106 1.02203 0.87668 1.24278 0.77640 0.83167 0.84693 1.90655 1.35835 1.26298 1.86866 1.86572 1.69829 1.55447 1.15058 1.22659 1.01481 0.96162 0.81214 1.20723 0.80572 0.84418 0.85774 1.90679 1.39765 1.27986 1.88007 1.46061 1.52099 1.31755 1.05185 1.18624 0.93572 0.92542 0.80831 1.21579 1.33518 1.13756 0.90766 0.89648 1.26059 0.94887 0.95945 1.02661 1.70122 1.37663 1.25604 1.23386 0.85199 0.78982 0.78464 0.76524 1.18702 1.21123 1.18678 1.22975 1.05686 1.00406 0.91310 1.23081 0.92642 1.02387 1.02883 1.22922 0.98408 1.03085 0.96388 0.91959 0.91909 0.89993 0.76829 0.85248 0.84732 0.86130 0.86225 0.75165 0.98963 0.98945 0.92177 0.85457 0.87456 0.88118 0.89572 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.36 71.98 0.60 -2.13 16 2 C 0.18 2.74 0.79 -10.79 -0.01 2.73 16 3 O -0.56 -10.39 11.04 -131.52 -1.45 -11.85 16 4 C -0.14 -2.11 5.05 29.85 0.15 -1.96 16 5 C 0.46 11.21 7.52 71.24 0.54 11.74 16 6 O -0.51 -14.40 12.71 27.95 0.36 -14.05 16 7 O -0.35 -10.56 9.75 -45.00 -0.44 -11.00 16 8 C 0.06 1.80 5.94 71.23 0.42 2.22 16 9 C 0.50 20.12 7.91 87.65 0.69 20.81 16 10 O -0.58 -29.37 16.50 15.75 0.26 -29.11 16 11 N -0.70 -29.08 5.55 -466.80 -2.59 -31.67 16 12 C 0.27 14.44 5.43 85.63 0.46 14.90 16 13 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 14 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 17 Si 0.99 41.87 29.54 68.60 2.03 43.89 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 C -0.19 -2.00 5.15 -10.79 -0.06 -2.06 16 22 C -0.17 -1.64 9.74 30.59 0.30 -1.34 16 23 C -0.17 -1.90 9.67 30.60 0.30 -1.61 16 24 H 0.06 1.10 7.29 -2.39 -0.02 1.08 16 25 H 0.06 1.48 5.52 -2.39 -0.01 1.47 16 26 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.38 4.57 7.56 -74.06 -0.56 4.01 16 28 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 2.95 8.13 -2.38 -0.02 2.93 16 31 H 0.12 2.96 8.13 -2.39 -0.02 2.94 16 32 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.13 1.03 8.11 -2.39 -0.02 1.01 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.94 6.38 -2.39 -0.02 0.93 16 39 H 0.09 1.19 7.61 -2.39 -0.02 1.17 16 40 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -76.13 339.95 2.28 -73.84 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.26 Total: 20.81 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 4.10 Total: 14.31 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.30 Total: -86.86 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -1.28 Total: -66.00 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.13 2.28 -73.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756313086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.468 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds