Wall clock time and date at job start Tue Mar 31 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47121 * 2 1 4 4 C 1.46506 * 119.99956 * 90.00314 * 3 2 1 5 5 C 1.50696 * 109.46871 * 89.99486 * 4 3 2 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.34771 * 120.00412 * 270.00348 * 3 2 1 14 14 O 1.21282 * 120.00196 * 180.02562 * 13 3 2 15 15 C 1.50709 * 120.00019 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47161 * 180.02562 * 15 13 3 17 17 C 1.34228 * 116.99551 * 179.97438 * 16 15 13 18 18 O 1.20827 * 120.00333 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99724 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.86996 * 303.99621 * 19 17 16 21 21 C 1.54102 * 109.87922 * 65.00030 * 19 17 16 22 22 C 1.54812 * 104.18485 * 121.45206 * 21 19 17 23 23 C 1.54994 * 102.09294 * 20.88532 * 22 21 19 24 24 O 1.43741 * 109.88132 * 182.83459 * 19 17 16 25 25 H 1.09004 * 109.46737 * 300.00041 * 1 2 3 26 26 H 1.08998 * 109.47027 * 59.99278 * 1 2 3 27 27 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46874 * 240.00494 * 2 1 3 29 29 H 1.08991 * 109.47314 * 120.00462 * 2 1 3 30 30 H 1.09005 * 109.46943 * 329.99807 * 4 3 2 31 31 H 1.09002 * 109.47064 * 210.00069 * 4 3 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46687 * 300.00391 * 15 13 3 34 34 H 1.09002 * 109.46552 * 60.00379 * 15 13 3 35 35 H 1.08994 * 110.48957 * 240.12779 * 21 19 17 36 36 H 1.08997 * 110.48511 * 2.78338 * 21 19 17 37 37 H 1.09000 * 110.90774 * 139.07914 * 22 21 19 38 38 H 1.08997 * 110.91194 * 262.68735 * 22 21 19 39 39 H 1.08997 * 110.61997 * 81.47620 * 23 22 21 40 40 H 1.09008 * 110.61929 * 204.31705 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8349 1.7037 6 1 4.3429 1.2307 1.0957 7 6 4.1492 2.3895 2.8780 8 7 5.3915 2.1831 3.2574 9 14 3.0125 3.4338 3.9300 10 1 3.1149 4.8543 3.5094 11 1 1.6131 2.9670 3.7603 12 1 3.4060 3.3104 5.3566 13 6 2.2430 2.0166 -1.1671 14 8 2.6477 3.1599 -1.1671 15 6 1.9923 1.3061 -2.4723 16 8 2.3072 2.1956 -3.5759 17 6 2.1372 1.7115 -4.8162 18 8 1.7379 0.5822 -4.9746 19 6 2.4442 2.5767 -6.0113 20 1 1.8697 3.5014 -5.9567 21 6 3.9509 2.8977 -6.0527 22 6 4.4185 2.3476 -7.4221 23 6 3.0888 2.2784 -8.2155 24 8 2.1245 1.8700 -7.2215 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5818 1.6877 2.0285 31 1 2.0956 3.1411 1.1385 32 1 5.7175 2.5736 4.0833 33 1 2.6228 0.4189 -2.5299 34 1 0.9444 1.0116 -2.5302 35 1 4.1133 3.9741 -5.9983 36 1 4.4713 2.3907 -5.2402 37 1 5.1198 3.0332 -7.8978 38 1 4.8586 1.3564 -7.3135 39 1 2.8318 3.2573 -8.6202 40 1 3.1564 1.5398 -9.0143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756347029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:28 Heat of formation + Delta-G solvation = -181.734373 kcal Electronic energy + Delta-G solvation = -22862.206939 eV Core-core repulsion = 19255.795901 eV Total energy + Delta-G solvation = -3606.411039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05056 -40.84389 -39.90824 -37.64418 -37.03561 -34.89218 -33.28814 -32.12289 -31.43394 -30.43741 -28.66040 -25.21854 -24.47371 -23.99876 -22.76569 -21.98929 -20.29221 -19.17988 -19.13450 -18.32852 -18.12713 -17.57596 -17.23793 -17.12703 -16.41457 -16.01475 -15.94100 -15.38802 -14.82738 -14.78025 -14.67453 -14.52940 -14.19833 -13.87597 -13.75940 -13.42763 -13.18380 -12.90241 -12.76122 -12.58148 -12.44095 -12.27328 -12.16994 -12.06467 -12.03171 -11.83810 -11.75025 -11.50540 -10.91213 -10.83477 -10.78824 -9.55380 -8.34538 -6.40391 0.92186 0.99265 1.33947 1.37862 1.46059 1.53775 2.21167 2.31043 2.90334 2.99661 3.31881 3.38444 3.52521 3.77024 3.84824 3.90425 3.97738 4.11122 4.21108 4.29289 4.34276 4.56296 4.68193 4.74555 4.77185 4.84418 4.89767 4.93486 4.94797 4.97472 5.08962 5.10609 5.34206 5.43768 5.54138 5.65279 6.20346 6.44147 6.55065 6.61184 7.12770 7.26930 8.82333 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.003666 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.464802 B = 7635.987473 C = 8314.096519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.236 1.236 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.571 6.571 15 C 0.060 3.940 16 O -0.341 6.341 17 C 0.458 3.542 18 O -0.518 6.518 19 C 0.091 3.909 20 H 0.134 0.866 21 C -0.146 4.146 22 C -0.151 4.151 23 C 0.040 3.960 24 O -0.379 6.379 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.269 0.731 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -1.301 -19.728 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.579 4.579 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.159 1.159 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.451 6.451 15 C -0.017 4.017 16 O -0.257 6.257 17 C 0.302 3.698 18 O -0.406 6.406 19 C 0.032 3.968 20 H 0.152 0.848 21 C -0.184 4.184 22 C -0.188 4.188 23 C -0.035 4.035 24 O -0.298 6.298 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.789 -1.196 -19.619 21.530 hybrid contribution 0.347 0.254 1.003 1.092 sum -8.441 -0.942 -18.615 20.461 Atomic orbital electron populations 1.22183 0.93653 1.03944 1.02297 1.21895 0.95921 0.80783 1.04389 1.47966 1.63823 1.15308 1.05296 1.19389 0.95095 0.93201 0.81827 1.21551 0.97026 1.32409 1.06867 0.95230 1.25852 0.96737 0.97121 0.98909 1.70049 1.17435 1.46446 1.24494 0.85717 0.80510 0.79026 0.77727 1.20091 1.15900 1.20058 1.20437 0.78157 0.86674 0.85713 1.90676 1.46722 1.19987 1.87680 1.22847 1.04809 0.92016 0.82001 1.86535 1.79001 1.45434 1.14740 1.24321 0.73738 0.87181 0.84609 1.90649 1.42502 1.20886 1.86604 1.22384 0.99725 0.93227 0.81506 0.84827 1.22996 0.90872 1.04910 0.99643 1.23209 0.98719 1.02981 0.93914 1.23974 0.85933 1.02547 0.91091 1.88952 1.53950 1.67516 1.19423 0.92706 0.92347 0.88560 0.89043 0.89882 0.92603 0.95961 0.92208 0.87041 0.85753 0.86521 0.91339 0.86657 0.90959 0.89081 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.24 71.98 0.74 -2.84 16 2 C 0.09 2.66 5.93 86.38 0.51 3.17 16 3 N -0.59 -23.77 2.46 -826.13 -2.03 -25.80 16 4 C 0.23 10.86 4.23 85.63 0.36 11.22 16 5 C -0.54 -31.53 9.94 25.60 0.25 -31.28 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.70 5.47 84.66 0.46 1.17 16 8 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 9 Si 0.95 43.82 27.47 68.60 1.88 45.71 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.50 20.80 7.75 87.66 0.68 21.48 16 14 O -0.57 -29.15 16.08 15.76 0.25 -28.90 16 15 C 0.06 1.88 4.50 71.24 0.32 2.20 16 16 O -0.34 -11.12 9.75 -45.05 -0.44 -11.56 16 17 C 0.46 13.32 7.06 71.24 0.50 13.82 16 18 O -0.52 -17.39 16.27 28.31 0.46 -16.93 16 19 C 0.09 1.94 3.96 30.22 0.12 2.06 16 20 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 21 C -0.15 -2.53 6.63 31.59 0.21 -2.32 16 22 C -0.15 -1.89 7.15 31.89 0.23 -1.66 16 23 C 0.04 0.51 7.72 72.66 0.56 1.07 16 24 O -0.38 -8.55 10.74 -130.22 -1.40 -9.95 16 25 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.21 6.44 -2.38 -0.02 2.19 16 29 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 30 H 0.06 2.43 7.13 -2.38 -0.02 2.41 16 31 H 0.02 1.14 6.85 -2.39 -0.02 1.13 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.11 3.19 7.39 -2.39 -0.02 3.17 16 34 H 0.12 3.20 7.18 -2.39 -0.02 3.18 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.46 7.69 -2.39 -0.02 1.44 16 37 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -81.78 337.54 4.96 -76.82 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.98 Total: 11.60 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 4.95 Total: 18.10 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -1.73 Total: -84.90 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -1.12 Total: -67.33 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -81.78 4.96 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756347029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.913 kcal (2) G-P(sol) polarization free energy of solvation -81.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds