Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47574 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00124 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00006 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99722 * 179.97438 * 11 10 9 14 14 O 1.45200 * 109.46938 * 179.97438 * 13 11 10 15 15 C 1.34221 * 117.00279 * 180.02562 * 14 13 11 16 16 O 1.20833 * 119.99611 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00305 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47416 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.47664 * 304.99705 * 18 17 15 20 20 C 1.53088 * 109.48372 * 184.97496 * 18 17 15 21 21 C 1.53179 * 109.16387 * 182.40561 * 20 18 17 22 22 C 1.53174 * 109.03673 * 56.97783 * 21 20 18 23 23 C 1.53085 * 109.16726 * 303.02112 * 22 21 20 24 24 O 1.42902 * 109.48452 * 65.01585 * 18 17 15 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 0.97003 * 119.99824 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.46894 * 299.99737 * 13 11 10 30 30 H 1.09001 * 109.47351 * 59.99928 * 13 11 10 31 31 H 1.09004 * 109.47082 * 299.99093 * 17 15 14 32 32 H 1.08997 * 109.47604 * 59.99123 * 17 15 14 33 33 H 1.09001 * 109.51846 * 302.30881 * 20 18 17 34 34 H 1.09000 * 109.52111 * 62.43753 * 20 18 17 35 35 H 1.09001 * 109.54032 * 176.84734 * 21 20 18 36 36 H 1.08999 * 109.54578 * 297.10825 * 21 20 18 37 37 H 1.09003 * 109.52077 * 62.92864 * 22 21 20 38 38 H 1.08996 * 109.52515 * 183.04625 * 22 21 20 39 39 H 1.08998 * 109.48531 * 177.59368 * 23 22 21 40 40 H 1.09003 * 109.47930 * 297.61647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2032 -3.6125 0.0180 11 6 1.7540 -4.8833 0.0240 12 8 0.5617 -5.1049 0.0252 13 6 2.7334 -6.0287 0.0293 14 8 2.0075 -7.2861 0.0359 15 6 2.7385 -8.4118 0.0418 16 8 3.9452 -8.3485 0.0409 17 6 2.0544 -9.7545 0.0482 18 6 3.1082 -10.8638 0.0534 19 1 3.7858 -10.7254 -0.7891 20 6 2.4174 -12.2248 -0.0652 21 6 3.4736 -13.3323 0.0012 22 6 4.2626 -13.1926 1.3067 23 6 4.8821 -11.7942 1.3724 24 8 3.8491 -10.8117 1.2743 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 3.1569 -3.4352 0.0167 29 1 3.3599 -5.9750 -0.8609 30 1 3.3602 -5.9667 0.9190 31 1 1.4315 -9.8407 0.9385 32 1 1.4318 -9.8495 -0.8414 33 1 1.7097 -12.3467 0.7548 34 1 1.8871 -12.2825 -1.0157 35 1 2.9836 -14.3055 -0.0264 36 1 4.1524 -13.2402 -0.8467 37 1 3.5921 -13.3341 2.1544 38 1 5.0520 -13.9435 1.3374 39 1 5.4093 -11.6742 2.3188 40 1 5.5832 -11.6681 0.5473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756507556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = -190.939331 kcal Electronic energy + Delta-G solvation = -21956.012806 eV Core-core repulsion = 18349.202610 eV Total energy + Delta-G solvation = -3606.810195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72062 -39.58280 -38.72863 -36.35282 -34.48219 -33.96930 -33.32994 -32.53152 -29.68349 -28.44127 -26.21600 -24.82368 -23.36746 -22.62929 -20.81118 -20.63039 -20.03192 -17.79514 -17.69918 -17.11615 -16.53347 -16.33092 -16.18257 -15.75454 -15.01408 -14.91112 -14.69777 -14.60394 -13.84147 -13.70087 -13.33860 -13.10192 -12.97726 -12.70897 -12.41473 -12.34508 -12.29164 -11.88168 -11.63472 -11.47454 -11.18153 -11.07079 -10.81307 -10.73710 -10.68591 -10.50949 -10.17547 -9.73679 -9.33506 -8.83501 -8.74661 -8.11173 -6.55122 -4.29361 2.17552 2.40003 3.08212 3.36689 3.38391 3.41344 3.57439 3.88615 4.26597 4.39304 4.42846 4.43687 4.54519 4.68249 4.79439 4.89482 5.03406 5.10382 5.11256 5.20477 5.24378 5.26418 5.27620 5.29687 5.38847 5.47719 5.52266 5.61993 5.69051 5.87711 6.36509 6.91219 6.94138 7.15143 7.17218 7.56610 7.71620 8.21284 8.34121 8.65545 8.80976 9.44069 10.85017 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054489 B = 0.002346 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.745491 B =11932.352916 C =12282.383735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.625 4.625 8 H 0.058 0.942 9 C 0.241 3.759 10 N -0.702 5.702 11 C 0.500 3.500 12 O -0.536 6.536 13 C 0.051 3.949 14 O -0.332 6.332 15 C 0.461 3.539 16 O -0.501 6.501 17 C -0.107 4.107 18 C 0.102 3.898 19 H 0.068 0.932 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.158 4.158 23 C 0.063 3.937 24 O -0.370 6.370 25 H 0.273 0.727 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.395 0.605 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -26.341 -0.053 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.183 4.183 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.663 4.663 8 H 0.077 0.923 9 C 0.120 3.880 10 N -0.353 5.353 11 C 0.283 3.717 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.248 6.248 15 C 0.304 3.696 16 O -0.388 6.388 17 C -0.144 4.144 18 C 0.044 3.956 19 H 0.086 0.914 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.013 4.013 24 O -0.288 6.288 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.229 0.771 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.178 -24.634 0.093 25.957 hybrid contribution 0.921 -1.778 -0.171 2.010 sum 9.099 -26.412 -0.079 27.936 Atomic orbital electron populations 1.70767 1.06867 1.31074 1.44751 1.25903 0.96419 1.02779 0.93221 0.83431 0.74795 0.74775 0.76616 1.20535 1.21240 1.21249 1.22050 0.94637 0.91368 1.58275 0.92335 1.19231 0.88891 0.83103 0.96732 1.46176 1.11435 1.05082 1.72561 1.19970 0.89192 0.84024 0.78481 1.90696 1.16403 1.84612 1.49614 1.22792 0.94205 0.81091 1.04600 1.86554 1.40543 1.14012 1.83648 1.23585 0.86684 0.86663 0.72691 1.90676 1.15438 1.87782 1.44891 1.21445 0.98746 0.87248 1.06997 1.21849 0.92390 0.92730 0.88653 0.91368 1.22218 0.98827 0.94477 1.03364 1.21571 0.97818 0.98742 0.97794 1.22225 1.00653 0.98133 0.98603 1.22528 0.89559 0.86994 1.02257 1.87985 1.48275 1.54936 1.37641 0.91680 0.96261 0.96268 0.77138 0.88541 0.88469 0.86591 0.86042 0.90559 0.90413 0.91263 0.91703 0.90992 0.90901 0.88876 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.65 55.43 0.76 -26.38 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.28 29.90 -169.99 -5.08 19.20 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.63 -17.09 9.28 -34.44 -0.32 -17.41 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.24 6.34 4.74 -5.20 -0.02 6.32 16 10 N -0.70 -14.85 5.55 -61.47 -0.34 -15.19 16 11 C 0.50 10.19 7.91 -10.98 -0.09 10.11 16 12 O -0.54 -13.15 16.50 -14.10 -0.23 -13.38 16 13 C 0.05 0.80 5.94 36.01 0.21 1.01 16 14 O -0.33 -5.33 9.75 -45.88 -0.45 -5.78 16 15 C 0.46 6.33 7.84 36.00 0.28 6.61 16 16 O -0.50 -7.86 15.17 -24.05 -0.36 -8.23 16 17 C -0.11 -1.01 5.52 -27.89 -0.15 -1.16 16 18 C 0.10 0.93 2.19 -26.69 -0.06 0.87 16 19 H 0.07 0.66 7.96 -51.93 -0.41 0.24 16 20 C -0.15 -0.97 5.42 -26.59 -0.14 -1.12 16 21 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 22 C -0.16 -0.99 6.14 -26.60 -0.16 -1.15 16 23 C 0.06 0.53 6.84 37.20 0.25 0.78 16 24 O -0.37 -4.15 9.64 -49.63 -0.48 -4.63 16 25 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 26 H 0.02 0.55 8.01 -51.92 -0.42 0.14 16 27 H 0.02 0.55 8.00 -51.93 -0.42 0.13 16 28 H 0.40 7.13 8.32 -40.82 -0.34 6.79 16 29 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 30 H 0.10 1.37 8.13 -51.93 -0.42 0.94 16 31 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -35.11 339.60 -7.68 -42.78 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.15 Total: 1.97 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.46 Total: 4.52 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.42 Total: -41.57 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.52 Total: -32.01 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.11 -7.68 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756507556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.155 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds