Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47574 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00124 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00006 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99722 * 179.97438 * 11 10 9 14 14 O 1.45200 * 109.46938 * 179.97438 * 13 11 10 15 15 C 1.34221 * 117.00279 * 180.02562 * 14 13 11 16 16 O 1.20833 * 119.99611 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00305 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47416 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.47664 * 304.99705 * 18 17 15 20 20 C 1.53088 * 109.48372 * 184.97496 * 18 17 15 21 21 C 1.53179 * 109.16387 * 182.40561 * 20 18 17 22 22 C 1.53174 * 109.03673 * 56.97783 * 21 20 18 23 23 C 1.53085 * 109.16726 * 303.02112 * 22 21 20 24 24 O 1.42902 * 109.48452 * 65.01585 * 18 17 15 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 0.97003 * 119.99824 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.46894 * 299.99737 * 13 11 10 30 30 H 1.09001 * 109.47351 * 59.99928 * 13 11 10 31 31 H 1.09004 * 109.47082 * 299.99093 * 17 15 14 32 32 H 1.08997 * 109.47604 * 59.99123 * 17 15 14 33 33 H 1.09001 * 109.51846 * 302.30881 * 20 18 17 34 34 H 1.09000 * 109.52111 * 62.43753 * 20 18 17 35 35 H 1.09001 * 109.54032 * 176.84734 * 21 20 18 36 36 H 1.08999 * 109.54578 * 297.10825 * 21 20 18 37 37 H 1.09003 * 109.52077 * 62.92864 * 22 21 20 38 38 H 1.08996 * 109.52515 * 183.04625 * 22 21 20 39 39 H 1.08998 * 109.48531 * 177.59368 * 23 22 21 40 40 H 1.09003 * 109.47930 * 297.61647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2032 -3.6125 0.0180 11 6 1.7540 -4.8833 0.0240 12 8 0.5617 -5.1049 0.0252 13 6 2.7334 -6.0287 0.0293 14 8 2.0075 -7.2861 0.0359 15 6 2.7385 -8.4118 0.0418 16 8 3.9452 -8.3485 0.0409 17 6 2.0544 -9.7545 0.0482 18 6 3.1082 -10.8638 0.0534 19 1 3.7858 -10.7254 -0.7891 20 6 2.4174 -12.2248 -0.0652 21 6 3.4736 -13.3323 0.0012 22 6 4.2626 -13.1926 1.3067 23 6 4.8821 -11.7942 1.3724 24 8 3.8491 -10.8117 1.2743 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 3.1569 -3.4352 0.0167 29 1 3.3599 -5.9750 -0.8609 30 1 3.3602 -5.9667 0.9190 31 1 1.4315 -9.8407 0.9385 32 1 1.4318 -9.8495 -0.8414 33 1 1.7097 -12.3467 0.7548 34 1 1.8871 -12.2825 -1.0157 35 1 2.9836 -14.3055 -0.0264 36 1 4.1524 -13.2402 -0.8467 37 1 3.5921 -13.3341 2.1544 38 1 5.0520 -13.9435 1.3374 39 1 5.4093 -11.6742 2.3188 40 1 5.5832 -11.6681 0.5473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756507556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -214.644549 kcal Electronic energy + Delta-G solvation = -21957.040741 eV Core-core repulsion = 18349.202610 eV Total energy + Delta-G solvation = -3607.838131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83426 -40.65695 -40.06718 -37.57214 -36.47109 -34.56482 -34.54427 -34.03080 -30.96448 -29.49818 -28.00402 -25.50792 -24.83100 -23.92288 -21.84561 -21.71224 -21.19951 -19.61957 -18.84086 -18.10983 -18.09290 -17.29635 -17.25515 -16.85792 -16.43074 -16.24658 -15.62154 -15.45921 -15.37992 -14.86918 -14.73271 -14.43049 -14.30620 -13.89915 -13.64258 -13.53141 -13.31816 -13.13859 -13.03885 -12.54609 -12.19399 -11.98491 -11.93248 -11.91490 -11.75648 -11.61755 -11.25752 -11.12964 -10.89783 -10.78666 -10.37373 -10.09340 -8.80914 -6.56976 1.11551 1.22175 1.42310 1.56750 1.64984 1.84027 2.39949 2.57629 2.76977 3.06852 3.53315 3.61986 3.67251 3.93014 3.94136 3.97711 3.99323 4.09617 4.16148 4.28049 4.44804 4.49812 4.67125 4.73059 4.73345 4.88407 4.91353 4.94850 5.07221 5.14452 5.18234 5.25631 5.31628 5.39804 5.49746 6.04421 6.28669 6.29220 6.56762 6.67393 7.10543 7.31246 8.58585 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054489 B = 0.002346 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.745491 B =11932.352916 C =12282.383735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.032 4.032 3 Si 1.130 2.870 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.631 4.631 8 H 0.078 0.922 9 C 0.253 3.747 10 N -0.696 5.696 11 C 0.501 3.499 12 O -0.582 6.582 13 C 0.062 3.938 14 O -0.351 6.351 15 C 0.461 3.539 16 O -0.523 6.523 17 C -0.104 4.104 18 C 0.099 3.901 19 H 0.060 0.940 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.154 4.154 23 C 0.056 3.944 24 O -0.400 6.400 25 H 0.255 0.745 26 H -0.012 1.012 27 H -0.011 1.011 28 H 0.413 0.587 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -27.451 -0.342 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.231 4.231 3 Si 0.950 3.050 4 H -0.212 1.212 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.669 4.669 8 H 0.096 0.904 9 C 0.130 3.870 10 N -0.348 5.348 11 C 0.287 3.713 12 O -0.462 6.462 13 C -0.015 4.015 14 O -0.267 6.267 15 C 0.305 3.695 16 O -0.411 6.411 17 C -0.141 4.141 18 C 0.042 3.958 19 H 0.078 0.922 20 C -0.184 4.184 21 C -0.160 4.160 22 C -0.191 4.191 23 C -0.020 4.020 24 O -0.319 6.319 25 H 0.064 0.936 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.250 0.750 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.006 -25.797 -0.197 27.670 hybrid contribution 0.376 -1.521 -0.072 1.569 sum 10.382 -27.318 -0.269 29.226 Atomic orbital electron populations 1.70909 1.08250 1.30001 1.47252 1.27651 0.96362 1.07157 0.91941 0.82778 0.73906 0.69975 0.78391 1.21223 1.18892 1.18799 1.22422 0.95701 0.91578 1.57194 0.90375 1.18762 0.89263 0.85046 0.93919 1.45901 1.11592 1.04538 1.72723 1.20751 0.89379 0.84658 0.76541 1.90673 1.18840 1.85302 1.51404 1.22649 0.92458 0.79528 1.06878 1.86565 1.41526 1.14542 1.84086 1.24414 0.86601 0.86977 0.71511 1.90663 1.16459 1.87940 1.46058 1.21683 0.99021 0.84639 1.08775 1.21959 0.92203 0.93987 0.87698 0.92249 1.22200 0.98864 0.92881 1.04422 1.21612 0.97745 0.99200 0.97482 1.22188 1.01032 0.97058 0.98867 1.22680 0.89252 0.87774 1.02318 1.87936 1.49130 1.56232 1.38646 0.93609 0.99394 0.99288 0.75018 0.85885 0.86305 0.85632 0.83173 0.90377 0.88602 0.89806 0.91545 0.91252 0.89429 0.88669 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.65 21.45 0.29 -57.00 16 2 C -0.03 -1.82 5.46 84.65 0.46 -1.35 16 3 Si 1.13 47.65 29.90 68.60 2.05 49.71 16 4 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.63 -34.39 9.28 25.60 0.24 -34.16 16 8 H 0.08 3.88 7.60 -2.91 -0.02 3.85 16 9 C 0.25 13.67 4.74 85.63 0.41 14.08 16 10 N -0.70 -29.33 5.55 -466.78 -2.59 -31.92 16 11 C 0.50 20.39 7.91 87.66 0.69 21.08 16 12 O -0.58 -29.27 16.50 15.79 0.26 -29.01 16 13 C 0.06 1.85 5.94 71.24 0.42 2.27 16 14 O -0.35 -10.89 9.75 -44.98 -0.44 -11.33 16 15 C 0.46 12.06 7.84 71.23 0.56 12.61 16 16 O -0.52 -15.82 15.17 27.00 0.41 -15.41 16 17 C -0.10 -1.79 5.52 29.85 0.16 -1.62 16 18 C 0.10 1.66 2.19 30.62 0.07 1.73 16 19 H 0.06 1.08 7.96 -2.39 -0.02 1.06 16 20 C -0.15 -1.54 5.42 30.68 0.17 -1.38 16 21 C -0.12 -1.16 6.03 30.71 0.19 -0.97 16 22 C -0.15 -1.67 6.14 30.68 0.19 -1.48 16 23 C 0.06 0.89 6.84 72.01 0.49 1.38 16 24 O -0.40 -8.66 9.64 -135.22 -1.30 -9.96 16 25 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 26 H -0.01 -0.70 8.01 -2.38 -0.02 -0.72 16 27 H -0.01 -0.64 8.00 -2.39 -0.02 -0.66 16 28 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 29 H 0.12 3.07 8.13 -2.39 -0.02 3.05 16 30 H 0.12 3.09 8.13 -2.39 -0.02 3.07 16 31 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.81 339.60 3.09 -74.71 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.37 Total: 18.02 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 4.04 Total: 12.19 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.30 Total: -88.92 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -1.07 Total: -65.71 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.71 kcal Total: -77.81 3.09 -74.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756507556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.930 kcal (2) G-P(sol) polarization free energy of solvation -77.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds