Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48500 * 109.47176 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.46905 * 30.00087 * 3 2 1 6 6 H 1.48500 * 109.47122 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00520 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99566 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00472 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99805 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00095 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.46750 * 179.97438 * 13 11 10 15 15 C 1.34233 * 116.99351 * 179.97438 * 14 13 11 16 16 O 1.20816 * 120.00465 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99438 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46785 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47894 * 54.97551 * 18 17 15 20 20 C 1.53096 * 109.47781 * 174.99733 * 18 17 15 21 21 C 1.53181 * 109.16280 * 177.60025 * 20 18 17 22 22 C 1.53176 * 109.03564 * 303.02405 * 21 20 18 23 23 C 1.53090 * 109.16668 * 56.97896 * 22 21 20 24 24 O 1.42902 * 109.41282 * 302.38812 * 23 22 21 25 25 H 0.97005 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47362 * 60.00638 * 9 7 2 27 27 H 1.09002 * 109.47163 * 300.00032 * 9 7 2 28 28 H 0.97007 * 119.99443 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.47032 * 60.00144 * 13 11 10 30 30 H 1.09002 * 109.47151 * 299.99443 * 13 11 10 31 31 H 1.08997 * 109.47722 * 60.00189 * 17 15 14 32 32 H 1.09006 * 109.47092 * 299.99803 * 17 15 14 33 33 H 1.08998 * 109.52300 * 297.50977 * 20 18 17 34 34 H 1.09004 * 109.51858 * 57.69704 * 20 18 17 35 35 H 1.09005 * 109.54183 * 62.88808 * 21 20 18 36 36 H 1.08991 * 109.54342 * 183.15360 * 21 20 18 37 37 H 1.09005 * 109.52173 * 297.06763 * 22 21 20 38 38 H 1.09001 * 109.52406 * 176.88450 * 22 21 20 39 39 H 1.09003 * 109.47962 * 182.41257 * 23 22 21 40 40 H 1.08998 * 109.49361 * 62.37633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3248 -2.8217 0.0020 12 8 6.1129 -1.8999 0.0025 13 6 5.8271 -4.2426 0.0024 14 8 7.2791 -4.2425 0.0029 15 6 7.8884 -5.4386 0.0039 16 8 7.2304 -6.4519 0.0039 17 6 9.3934 -5.5175 0.0050 18 6 9.8271 -6.9848 0.0053 19 1 9.3652 -7.5005 -0.8365 20 6 11.3508 -7.0667 -0.1195 21 6 11.7820 -8.5353 -0.0581 22 6 11.2716 -9.1517 1.2480 23 6 9.7511 -8.9892 1.3199 24 8 9.4166 -7.6030 1.2265 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8751 -0.6805 -0.8888 28 1 3.3694 -3.3126 0.0010 29 1 5.4644 -4.7564 -0.8878 30 1 5.4631 -4.7563 0.8923 31 1 9.7826 -5.0230 0.8949 32 1 9.7837 -5.0238 -0.8850 33 1 11.6621 -6.6351 -1.0707 34 1 11.8134 -6.5167 0.7000 35 1 11.3595 -9.0751 -0.9056 36 1 12.8697 -8.5975 -0.0900 37 1 11.7328 -8.6438 2.0951 38 1 11.5264 -10.2112 1.2747 39 1 9.3873 -9.3879 2.2669 40 1 9.2879 -9.5312 0.4954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756507568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -183.292342 kcal Electronic energy + Delta-G solvation = -21974.513657 eV Core-core repulsion = 18368.035060 eV Total energy + Delta-G solvation = -3606.478597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72178 -39.58565 -38.75754 -36.35515 -34.36093 -33.96788 -33.32893 -32.42475 -29.83755 -28.71375 -27.00278 -24.83974 -23.35469 -22.12005 -20.78946 -20.62819 -20.10067 -17.78309 -17.52459 -17.11511 -16.50711 -16.32987 -16.21768 -15.63802 -15.14726 -14.91014 -14.78942 -14.70290 -14.12855 -13.68095 -13.37857 -13.10002 -12.99115 -12.71192 -12.44750 -12.38810 -12.33362 -11.99042 -11.63567 -11.47460 -11.18007 -11.06622 -10.81836 -10.73201 -10.68106 -10.50758 -9.99785 -9.73504 -9.53826 -9.32400 -8.81451 -8.25894 -6.23876 -4.26845 2.17763 2.39308 3.05036 3.25684 3.32461 3.40525 3.41516 3.87050 4.26535 4.31265 4.39926 4.43105 4.54490 4.68291 4.79534 4.89682 5.03464 5.10000 5.11045 5.11421 5.21582 5.25498 5.27967 5.29709 5.38994 5.47777 5.52263 5.61984 5.69172 5.87727 6.36132 6.73984 6.94291 7.01510 7.10789 7.32360 7.70546 8.05995 8.42188 8.69015 8.80951 9.35244 10.87889 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.053407 B = 0.002445 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.147319 B =11448.130729 C =11793.798239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.537 6.537 13 C 0.050 3.950 14 O -0.333 6.333 15 C 0.461 3.539 16 O -0.500 6.500 17 C -0.107 4.107 18 C 0.102 3.898 19 H 0.069 0.931 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.158 4.158 23 C 0.063 3.937 24 O -0.369 6.369 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.399 0.601 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.059 -17.877 -0.141 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.415 6.415 13 C -0.027 4.027 14 O -0.248 6.248 15 C 0.304 3.696 16 O -0.387 6.387 17 C -0.144 4.144 18 C 0.044 3.956 19 H 0.086 0.914 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.013 4.013 24 O -0.288 6.288 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.233 0.767 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 23.107 -17.253 0.007 28.838 hybrid contribution -0.044 0.246 -0.197 0.318 sum 23.063 -17.007 -0.190 28.656 Atomic orbital electron populations 1.69882 1.06212 1.27489 1.49197 1.24797 0.94817 0.99208 0.93811 0.86808 0.80577 0.83169 0.79086 1.19800 1.20848 1.18457 1.21070 0.88350 0.95338 1.53597 0.90124 1.19552 0.95349 0.78009 0.97053 1.46070 1.04907 1.11514 1.72551 1.19954 0.83667 0.89509 0.78340 1.90694 1.55349 1.45721 1.49734 1.22788 0.78077 0.97101 1.04770 1.86552 1.21693 1.32878 1.83697 1.23575 0.91987 0.81341 0.72730 1.90677 1.66914 1.36275 1.44808 1.21446 0.88492 0.97513 1.06974 1.21852 0.93438 0.91690 0.88662 0.91353 1.22221 0.95670 0.97661 1.03330 1.21573 1.01138 0.95427 0.97800 1.22228 0.97276 1.01521 0.98587 1.22532 0.93834 0.82691 1.02290 1.87985 1.80163 1.23182 1.37499 0.92198 0.95428 0.95894 0.76705 0.88422 0.88335 0.86607 0.86063 0.90428 0.90568 0.91698 0.91278 0.90993 0.90908 0.88867 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.55 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 10 N -0.70 -14.05 5.55 -61.47 -0.34 -14.39 16 11 C 0.50 9.71 7.91 -10.99 -0.09 9.62 16 12 O -0.54 -12.51 16.50 -14.10 -0.23 -12.74 16 13 C 0.05 0.75 5.94 36.01 0.21 0.97 16 14 O -0.33 -5.13 9.76 -45.91 -0.45 -5.58 16 15 C 0.46 6.14 7.84 36.01 0.28 6.42 16 16 O -0.50 -7.68 15.17 -24.03 -0.36 -8.05 16 17 C -0.11 -0.97 5.52 -27.88 -0.15 -1.12 16 18 C 0.10 0.90 2.19 -26.68 -0.06 0.84 16 19 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 20 C -0.15 -0.94 5.42 -26.59 -0.14 -1.09 16 21 C -0.12 -0.69 6.03 -26.55 -0.16 -0.85 16 22 C -0.16 -0.97 6.14 -26.59 -0.16 -1.13 16 23 C 0.06 0.52 6.84 37.20 0.25 0.77 16 24 O -0.37 -4.07 9.64 -49.61 -0.48 -4.55 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 27 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 28 H 0.40 6.92 8.32 -40.82 -0.34 6.59 16 29 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.10 1.33 8.13 -51.93 -0.42 0.90 16 31 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -34.50 337.31 -7.32 -41.82 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.17 Total: 0.61 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.48 Total: 6.72 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.43 Total: -39.93 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.52 Total: -30.92 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.50 -7.32 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756507568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.473 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds