Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48500 * 109.47176 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.46905 * 30.00087 * 3 2 1 6 6 H 1.48500 * 109.47122 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00520 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99566 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00472 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99805 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00095 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.46750 * 179.97438 * 13 11 10 15 15 C 1.34233 * 116.99351 * 179.97438 * 14 13 11 16 16 O 1.20816 * 120.00465 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99438 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46785 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47894 * 54.97551 * 18 17 15 20 20 C 1.53096 * 109.47781 * 174.99733 * 18 17 15 21 21 C 1.53181 * 109.16280 * 177.60025 * 20 18 17 22 22 C 1.53176 * 109.03564 * 303.02405 * 21 20 18 23 23 C 1.53090 * 109.16668 * 56.97896 * 22 21 20 24 24 O 1.42902 * 109.41282 * 302.38812 * 23 22 21 25 25 H 0.97005 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47362 * 60.00638 * 9 7 2 27 27 H 1.09002 * 109.47163 * 300.00032 * 9 7 2 28 28 H 0.97007 * 119.99443 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.47032 * 60.00144 * 13 11 10 30 30 H 1.09002 * 109.47151 * 299.99443 * 13 11 10 31 31 H 1.08997 * 109.47722 * 60.00189 * 17 15 14 32 32 H 1.09006 * 109.47092 * 299.99803 * 17 15 14 33 33 H 1.08998 * 109.52300 * 297.50977 * 20 18 17 34 34 H 1.09004 * 109.51858 * 57.69704 * 20 18 17 35 35 H 1.09005 * 109.54183 * 62.88808 * 21 20 18 36 36 H 1.08991 * 109.54342 * 183.15360 * 21 20 18 37 37 H 1.09005 * 109.52173 * 297.06763 * 22 21 20 38 38 H 1.09001 * 109.52406 * 176.88450 * 22 21 20 39 39 H 1.09003 * 109.47962 * 182.41257 * 23 22 21 40 40 H 1.08998 * 109.49361 * 62.37633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3248 -2.8217 0.0020 12 8 6.1129 -1.8999 0.0025 13 6 5.8271 -4.2426 0.0024 14 8 7.2791 -4.2425 0.0029 15 6 7.8884 -5.4386 0.0039 16 8 7.2304 -6.4519 0.0039 17 6 9.3934 -5.5175 0.0050 18 6 9.8271 -6.9848 0.0053 19 1 9.3652 -7.5005 -0.8365 20 6 11.3508 -7.0667 -0.1195 21 6 11.7820 -8.5353 -0.0581 22 6 11.2716 -9.1517 1.2480 23 6 9.7511 -8.9892 1.3199 24 8 9.4166 -7.6030 1.2265 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8751 -0.6805 -0.8888 28 1 3.3694 -3.3126 0.0010 29 1 5.4644 -4.7564 -0.8878 30 1 5.4631 -4.7563 0.8923 31 1 9.7826 -5.0230 0.8949 32 1 9.7837 -5.0238 -0.8850 33 1 11.6621 -6.6351 -1.0707 34 1 11.8134 -6.5167 0.7000 35 1 11.3595 -9.0751 -0.9056 36 1 12.8697 -8.5975 -0.0900 37 1 11.7328 -8.6438 2.0951 38 1 11.5264 -10.2112 1.2747 39 1 9.3873 -9.3879 2.2669 40 1 9.2879 -9.5312 0.4954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756507568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -206.605467 kcal Electronic energy + Delta-G solvation = -21975.524590 eV Core-core repulsion = 18368.035060 eV Total energy + Delta-G solvation = -3607.489530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -41.78405 -40.59460 -40.02819 -37.51742 -36.20653 -34.52672 -34.46971 -34.00556 -31.24551 -29.77554 -28.48537 -25.47460 -24.34087 -23.74024 -21.80515 -21.67978 -21.18025 -19.37362 -18.74963 -18.11953 -18.05591 -17.23510 -17.07808 -16.91945 -16.71352 -16.20375 -15.90851 -15.42797 -15.35913 -14.85460 -14.70012 -14.42082 -14.22120 -13.87163 -13.61443 -13.50592 -13.29428 -13.08741 -13.00654 -12.70644 -12.17588 -11.96474 -11.93429 -11.87890 -11.72798 -11.67894 -11.58284 -11.23607 -10.96744 -10.92621 -10.35413 -10.05046 -8.40347 -6.48120 1.16133 1.26828 1.33996 1.37232 1.48204 1.51014 2.28241 2.49204 2.79298 2.94893 3.59567 3.66367 3.71334 3.95602 3.96955 4.04095 4.04417 4.12111 4.19114 4.30506 4.47270 4.52626 4.69213 4.74490 4.75468 4.90148 4.96764 4.99881 5.08790 5.16004 5.19802 5.22430 5.32087 5.39683 5.41424 6.05245 6.31149 6.51322 6.63058 6.73565 7.10774 7.26230 8.74201 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.053407 B = 0.002445 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.147319 B =11448.130729 C =11793.798239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.698 5.698 11 C 0.505 3.495 12 O -0.577 6.577 13 C 0.058 3.942 14 O -0.349 6.349 15 C 0.460 3.540 16 O -0.524 6.524 17 C -0.104 4.104 18 C 0.098 3.902 19 H 0.059 0.941 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.154 4.154 23 C 0.056 3.944 24 O -0.399 6.399 25 H 0.273 0.727 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.412 0.588 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.257 -18.241 -0.471 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.291 3.709 12 O -0.457 6.457 13 C -0.019 4.019 14 O -0.265 6.265 15 C 0.305 3.695 16 O -0.413 6.413 17 C -0.141 4.141 18 C 0.041 3.959 19 H 0.077 0.923 20 C -0.183 4.183 21 C -0.161 4.161 22 C -0.191 4.191 23 C -0.020 4.020 24 O -0.319 6.319 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.249 0.751 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 25.308 -17.659 -0.325 30.862 hybrid contribution -0.753 0.255 -0.085 0.800 sum 24.555 -17.404 -0.409 30.100 Atomic orbital electron populations 1.69985 1.07729 1.28674 1.50513 1.25621 0.95577 1.02782 0.93538 0.85837 0.79267 0.79153 0.79525 1.18873 1.19890 1.18287 1.21271 0.89814 0.94707 1.52874 0.92123 1.19179 0.93448 0.80301 0.96182 1.45877 1.05901 1.10379 1.72753 1.20574 0.82698 0.91013 0.76593 1.90671 1.56180 1.47502 1.51386 1.22669 0.78627 0.93771 1.06789 1.86560 1.21552 1.34338 1.84067 1.24406 0.93380 0.80240 0.71514 1.90665 1.67723 1.36806 1.46074 1.21679 0.85282 0.98270 1.08828 1.21971 0.95184 0.91125 0.87648 0.92333 1.22200 0.93433 0.98268 1.04429 1.21614 1.02001 0.95019 0.97439 1.22190 0.95552 1.02502 0.98892 1.22677 0.95451 0.81608 1.02295 1.87936 1.80959 1.24473 1.38546 0.91806 0.96486 0.96492 0.75132 0.86072 0.86490 0.85560 0.83104 0.88576 0.90323 0.91602 0.89825 0.91212 0.89508 0.88713 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.96 21.45 0.30 -55.05 16 2 C 0.03 1.42 5.47 84.65 0.46 1.88 16 3 Si 0.94 43.63 27.47 68.60 1.88 45.52 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.88 6.54 99.48 0.65 -11.22 16 7 C -0.55 -30.03 9.83 25.60 0.25 -29.77 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.25 4.50 85.63 0.38 11.63 16 10 N -0.70 -27.53 5.55 -466.79 -2.59 -30.12 16 11 C 0.51 19.05 7.91 87.66 0.69 19.74 16 12 O -0.58 -26.52 16.50 15.77 0.26 -26.26 16 13 C 0.06 1.66 5.94 71.24 0.42 2.08 16 14 O -0.35 -10.25 9.76 -45.09 -0.44 -10.69 16 15 C 0.46 11.60 7.84 71.24 0.56 12.16 16 16 O -0.52 -15.61 15.17 27.05 0.41 -15.20 16 17 C -0.10 -1.67 5.52 29.85 0.16 -1.51 16 18 C 0.10 1.59 2.19 30.63 0.07 1.66 16 19 H 0.06 1.04 7.95 -2.39 -0.02 1.02 16 20 C -0.15 -1.46 5.42 30.69 0.17 -1.29 16 21 C -0.12 -1.12 6.03 30.71 0.19 -0.94 16 22 C -0.15 -1.63 6.14 30.68 0.19 -1.44 16 23 C 0.06 0.88 6.84 72.01 0.49 1.37 16 24 O -0.40 -8.50 9.64 -135.23 -1.30 -9.80 16 25 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 26 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 27 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 28 H 0.41 14.00 8.32 -92.70 -0.77 13.23 16 29 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 30 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.15 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.99 337.31 2.77 -71.21 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.21 Total: 14.83 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 4.04 Total: 15.56 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.29 Total: -85.16 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -1.07 Total: -61.96 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -73.99 2.77 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756507568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.391 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds