Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46689 * 2 1 4 4 H 1.09005 * 110.54916 * 307.86888 * 3 2 1 5 5 C 1.54998 * 110.61700 * 184.99859 * 3 2 1 6 6 C 1.54803 * 102.09174 * 204.47107 * 5 3 2 7 7 C 1.54095 * 104.19076 * 20.88107 * 6 5 3 8 8 H 1.08999 * 109.87965 * 242.45395 * 7 6 5 9 9 C 1.50695 * 109.88272 * 121.45107 * 7 6 5 10 10 O 1.20825 * 120.00224 * 245.00215 * 9 7 6 11 11 O 1.34232 * 119.99727 * 65.00290 * 9 7 6 12 12 C 1.45206 * 116.99878 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47021 * 179.97438 * 12 11 9 14 14 O 1.21282 * 120.00041 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00165 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46948 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99749 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99702 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99833 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00313 * 21 19 17 23 23 H 1.48501 * 109.47085 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00128 * 21 19 17 25 25 O 1.43750 * 107.29177 * 2.02622 * 7 6 5 26 26 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47581 * 300.00132 * 1 2 3 28 28 H 1.08998 * 109.47027 * 60.00988 * 1 2 3 29 29 H 1.08999 * 109.47581 * 239.99868 * 2 1 3 30 30 H 1.08998 * 109.47027 * 119.99012 * 2 1 3 31 31 H 1.09006 * 110.90884 * 86.27337 * 5 3 2 32 32 H 1.09001 * 110.93541 * 322.68820 * 5 3 2 33 33 H 1.09004 * 110.49008 * 262.20519 * 6 5 3 34 34 H 1.09001 * 110.60223 * 139.61292 * 6 5 3 35 35 H 1.09004 * 109.47122 * 299.99817 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99842 * 12 11 9 37 37 H 0.97004 * 119.99472 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47197 * 300.00087 * 16 15 13 39 39 H 1.09004 * 109.46923 * 59.99390 * 16 15 13 40 40 H 0.97005 * 119.99651 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5767 2.0122 -0.8058 5 6 3.5844 1.4755 -0.1264 6 6 3.9331 2.8411 0.5141 7 6 2.7071 3.1732 1.3865 8 1 2.2331 4.0867 1.0274 9 6 3.1315 3.3466 2.8220 10 8 2.7411 2.5740 3.6650 11 8 3.9432 4.3595 3.1642 12 6 4.3113 4.4649 4.5649 13 6 5.2199 5.6517 4.7575 14 8 5.5265 6.3411 3.8079 15 7 5.6916 5.9470 5.9850 16 6 6.5753 7.1004 6.1722 17 6 6.9573 7.2098 7.6258 18 1 6.5799 6.4918 8.3389 19 6 7.7894 8.2260 8.0453 20 7 8.1231 8.3212 9.3139 21 14 8.4427 9.4675 6.8119 22 1 7.5022 10.6127 6.7168 23 1 9.7728 9.9550 7.2574 24 1 8.5725 8.8218 5.4810 25 8 1.7930 2.0692 1.2770 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8898 1.4472 -1.1724 32 1 4.0384 0.6567 0.4317 33 1 4.0700 3.6000 -0.2563 34 1 4.8285 2.7583 1.1301 35 1 3.4125 4.5932 5.1681 36 1 4.8296 3.5571 4.8736 37 1 5.4460 5.3958 6.7445 38 1 7.4738 6.9714 5.5688 39 1 6.0577 8.0086 5.8634 40 1 8.7083 9.0364 9.6091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757137788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -175.969919 kcal Electronic energy + Delta-G solvation = -22072.529213 eV Core-core repulsion = 18466.368140 eV Total energy + Delta-G solvation = -3606.161073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00948 -39.65605 -38.73928 -36.39384 -34.40102 -34.07520 -32.61899 -32.44624 -30.04370 -28.94916 -27.09613 -24.81555 -22.49302 -22.13050 -21.42632 -20.99896 -20.15142 -18.07848 -17.62233 -17.21952 -16.80031 -16.57102 -15.91552 -15.74399 -15.16337 -14.63668 -14.55436 -14.17949 -14.06557 -13.96800 -13.39359 -13.26097 -13.13069 -12.68257 -12.40753 -12.19050 -12.17170 -12.06143 -11.88931 -11.42773 -11.22757 -11.08929 -11.05124 -10.86029 -10.76362 -10.63567 -10.05889 -10.01971 -9.56203 -9.37547 -8.83627 -8.29645 -6.25728 -4.28892 1.99205 2.06992 2.99595 3.23928 3.30613 3.38359 3.44054 3.80940 4.04776 4.27778 4.29423 4.39635 4.53681 4.67739 4.76987 4.84732 4.90646 5.05116 5.08505 5.10415 5.14899 5.19889 5.29354 5.36529 5.41126 5.55633 5.58948 5.63008 5.76405 5.95647 6.19767 6.40000 6.70732 6.98613 7.06673 7.29620 7.59121 8.02551 8.39056 8.65529 8.77516 9.33153 10.86013 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048575 B = 0.002580 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.284960 B =10849.213528 C =11196.158745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.078 0.922 5 C -0.152 4.152 6 C -0.144 4.144 7 C 0.092 3.908 8 H 0.112 0.888 9 C 0.458 3.542 10 O -0.489 6.489 11 O -0.328 6.328 12 C 0.049 3.951 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.699 5.699 16 C 0.222 3.778 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.261 1.261 25 O -0.344 6.344 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 -15.052 -20.035 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.095 0.905 5 C -0.190 4.190 6 C -0.182 4.182 7 C 0.032 3.968 8 H 0.129 0.871 9 C 0.299 3.701 10 O -0.375 6.375 11 O -0.243 6.243 12 C -0.028 4.028 13 C 0.286 3.714 14 O -0.414 6.414 15 N -0.349 5.349 16 C 0.101 3.899 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 O -0.263 6.263 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.878 -14.713 -20.118 27.610 hybrid contribution 0.401 0.492 0.060 0.638 sum -11.477 -14.221 -20.059 27.135 Atomic orbital electron populations 1.21750 0.95083 1.01779 1.02364 1.21568 0.96921 0.93945 1.03047 1.23352 0.94428 0.94715 0.85878 0.90457 1.23240 0.95893 0.97540 1.02279 1.22901 0.97453 0.98305 0.99523 1.22108 0.92212 0.93429 0.89029 0.87095 1.23535 0.76187 0.78554 0.91805 1.90689 1.52227 1.43021 1.51581 1.86520 1.60720 1.48109 1.28972 1.22848 1.00342 0.99576 0.80024 1.19902 0.81688 0.85474 0.84350 1.90698 1.59087 1.51384 1.40254 1.46072 1.49136 1.31972 1.07768 1.19558 0.88923 0.83500 0.97951 1.21065 1.31254 1.14914 0.91194 0.90111 1.24798 0.95243 0.97255 0.95325 1.69879 1.35344 1.32816 1.14679 0.86808 0.78774 0.81899 0.82157 1.19781 1.20836 1.18482 1.89000 1.55694 1.44239 1.37331 0.92604 0.91878 0.92801 0.90386 0.90750 0.89400 0.89984 0.88657 0.89394 0.88181 0.88254 0.76667 0.95416 0.95860 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.86 37.16 0.37 -0.66 16 2 C -0.12 -0.79 5.69 -26.73 -0.15 -0.94 16 3 C 0.07 0.56 3.29 -25.67 -0.08 0.47 16 4 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -1.02 6.59 -24.73 -0.16 -1.18 16 6 C -0.14 -1.18 6.63 -25.21 -0.17 -1.35 16 7 C 0.09 0.96 3.96 -27.31 -0.11 0.86 16 8 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.46 6.36 7.06 36.00 0.25 6.61 16 10 O -0.49 -8.02 16.27 -25.38 -0.41 -8.43 16 11 O -0.33 -4.95 9.75 -45.91 -0.45 -5.40 16 12 C 0.05 0.73 5.94 36.01 0.21 0.94 16 13 C 0.50 9.49 7.91 -10.99 -0.09 9.40 16 14 O -0.54 -12.18 16.50 -14.11 -0.23 -12.41 16 15 N -0.70 -13.78 5.55 -61.47 -0.34 -14.12 16 16 C 0.22 5.35 4.50 -5.20 -0.02 5.33 16 17 C -0.55 -14.74 9.83 -34.44 -0.34 -15.08 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 21 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 O -0.34 -3.89 10.30 -54.85 -0.56 -4.45 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 35 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.40 6.80 8.32 -40.82 -0.34 6.46 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -34.08 341.73 -7.28 -41.36 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.15 Total: 0.76 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.39 Total: 6.49 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.43 Total: -39.49 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.66 Total: -30.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.08 -7.28 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.612 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds