Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46689 * 2 1 4 4 H 1.09005 * 110.54916 * 307.86888 * 3 2 1 5 5 C 1.54998 * 110.61700 * 184.99859 * 3 2 1 6 6 C 1.54803 * 102.09174 * 204.47107 * 5 3 2 7 7 C 1.54095 * 104.19076 * 20.88107 * 6 5 3 8 8 H 1.08999 * 109.87965 * 242.45395 * 7 6 5 9 9 C 1.50695 * 109.88272 * 121.45107 * 7 6 5 10 10 O 1.20825 * 120.00224 * 245.00215 * 9 7 6 11 11 O 1.34232 * 119.99727 * 65.00290 * 9 7 6 12 12 C 1.45206 * 116.99878 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47021 * 179.97438 * 12 11 9 14 14 O 1.21282 * 120.00041 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00165 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46948 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99749 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99702 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99833 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00313 * 21 19 17 23 23 H 1.48501 * 109.47085 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00128 * 21 19 17 25 25 O 1.43750 * 107.29177 * 2.02622 * 7 6 5 26 26 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47581 * 300.00132 * 1 2 3 28 28 H 1.08998 * 109.47027 * 60.00988 * 1 2 3 29 29 H 1.08999 * 109.47581 * 239.99868 * 2 1 3 30 30 H 1.08998 * 109.47027 * 119.99012 * 2 1 3 31 31 H 1.09006 * 110.90884 * 86.27337 * 5 3 2 32 32 H 1.09001 * 110.93541 * 322.68820 * 5 3 2 33 33 H 1.09004 * 110.49008 * 262.20519 * 6 5 3 34 34 H 1.09001 * 110.60223 * 139.61292 * 6 5 3 35 35 H 1.09004 * 109.47122 * 299.99817 * 12 11 9 36 36 H 1.09000 * 109.47070 * 59.99842 * 12 11 9 37 37 H 0.97004 * 119.99472 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47197 * 300.00087 * 16 15 13 39 39 H 1.09004 * 109.46923 * 59.99390 * 16 15 13 40 40 H 0.97005 * 119.99651 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5767 2.0122 -0.8058 5 6 3.5844 1.4755 -0.1264 6 6 3.9331 2.8411 0.5141 7 6 2.7071 3.1732 1.3865 8 1 2.2331 4.0867 1.0274 9 6 3.1315 3.3466 2.8220 10 8 2.7411 2.5740 3.6650 11 8 3.9432 4.3595 3.1642 12 6 4.3113 4.4649 4.5649 13 6 5.2199 5.6517 4.7575 14 8 5.5265 6.3411 3.8079 15 7 5.6916 5.9470 5.9850 16 6 6.5753 7.1004 6.1722 17 6 6.9573 7.2098 7.6258 18 1 6.5799 6.4918 8.3389 19 6 7.7894 8.2260 8.0453 20 7 8.1231 8.3212 9.3139 21 14 8.4427 9.4675 6.8119 22 1 7.5022 10.6127 6.7168 23 1 9.7728 9.9550 7.2574 24 1 8.5725 8.8218 5.4810 25 8 1.7930 2.0692 1.2770 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8898 1.4472 -1.1724 32 1 4.0384 0.6567 0.4317 33 1 4.0700 3.6000 -0.2563 34 1 4.8285 2.7583 1.1301 35 1 3.4125 4.5932 5.1681 36 1 4.8296 3.5571 4.8736 37 1 5.4460 5.3958 6.7445 38 1 7.4738 6.9714 5.5688 39 1 6.0577 8.0086 5.8634 40 1 8.7083 9.0364 9.6091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757137788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -198.789274 kcal Electronic energy + Delta-G solvation = -22073.518735 eV Core-core repulsion = 18466.368140 eV Total energy + Delta-G solvation = -3607.150595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03796 -40.74420 -40.03881 -37.58724 -36.21913 -34.66266 -34.47344 -33.28603 -31.33466 -30.07906 -28.60938 -25.58312 -24.12694 -23.02336 -22.07313 -21.93055 -21.74391 -19.46536 -18.92452 -18.35106 -18.07841 -17.51655 -17.27844 -17.00845 -16.58025 -16.10763 -15.93212 -15.23873 -14.79385 -14.70673 -14.65549 -14.57963 -14.33314 -13.94718 -13.86943 -13.74916 -13.09414 -12.94022 -12.75835 -12.71112 -12.45285 -12.12033 -11.98879 -11.93385 -11.78583 -11.68153 -11.57221 -11.47299 -11.02161 -10.92948 -10.79562 -10.06136 -8.40489 -6.48379 0.93739 0.99571 1.33935 1.36555 1.47090 1.49378 2.27716 2.33053 2.85364 2.94782 3.36753 3.49691 3.64132 3.77524 3.80250 3.98748 4.00090 4.13408 4.16932 4.29297 4.38159 4.53630 4.73355 4.77089 4.86201 4.91671 4.97069 4.99647 5.08901 5.09986 5.12641 5.21548 5.22877 5.37813 5.43105 5.76830 6.04571 6.48954 6.52598 6.69638 7.09637 7.24833 8.74058 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048575 B = 0.002580 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.284960 B =10849.213528 C =11196.158745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.067 3.933 4 H 0.097 0.903 5 C -0.146 4.146 6 C -0.143 4.143 7 C 0.090 3.910 8 H 0.132 0.868 9 C 0.459 3.541 10 O -0.520 6.520 11 O -0.338 6.338 12 C 0.056 3.944 13 C 0.507 3.493 14 O -0.575 6.575 15 N -0.697 5.697 16 C 0.232 3.768 17 C -0.549 4.549 18 H 0.060 0.940 19 C 0.025 3.975 20 N -0.931 5.931 21 Si 0.939 3.061 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.257 1.257 25 O -0.372 6.372 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.413 0.587 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -15.405 -22.465 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.010 3.990 4 H 0.115 0.885 5 C -0.183 4.183 6 C -0.181 4.181 7 C 0.031 3.969 8 H 0.149 0.851 9 C 0.302 3.698 10 O -0.408 6.408 11 O -0.254 6.254 12 C -0.020 4.020 13 C 0.293 3.707 14 O -0.455 6.455 15 N -0.349 5.349 16 C 0.109 3.891 17 C -0.587 4.587 18 H 0.078 0.922 19 C -0.175 4.175 20 N -0.569 5.569 21 Si 0.762 3.238 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.181 1.181 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.249 0.751 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.244 -15.096 -22.546 29.768 hybrid contribution 0.451 0.518 0.835 1.081 sum -11.793 -14.578 -21.711 28.687 Atomic orbital electron populations 1.21743 0.95245 1.02121 1.01800 1.21612 0.96788 0.93661 1.03394 1.23633 0.95288 0.95088 0.84951 0.88524 1.23251 0.95077 0.96287 1.03701 1.22965 0.95706 0.99905 0.99481 1.22359 0.93387 0.94285 0.86889 0.85060 1.24310 0.75012 0.77409 0.93027 1.90670 1.53382 1.43999 1.52729 1.86520 1.61166 1.48827 1.28906 1.22753 1.00435 0.98122 0.80724 1.20465 0.81200 0.85916 0.83130 1.90677 1.60499 1.52981 1.41318 1.45872 1.48766 1.31213 1.08999 1.19184 0.89274 0.84901 0.95713 1.21274 1.30809 1.14281 0.92338 0.92152 1.25628 0.95646 0.99292 0.96983 1.69985 1.36451 1.33966 1.16518 0.85833 0.78551 0.79587 0.79787 1.18953 1.19923 1.18149 1.88984 1.56064 1.44745 1.39388 0.91868 0.94173 0.91564 0.87889 0.92490 0.86570 0.90812 0.86402 0.90751 0.86096 0.86058 0.75120 0.96326 0.96487 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.86 71.98 0.71 -1.14 16 2 C -0.12 -1.38 5.69 30.60 0.17 -1.21 16 3 C 0.07 0.87 3.29 31.28 0.10 0.98 16 4 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 5 C -0.15 -1.59 6.59 31.89 0.21 -1.38 16 6 C -0.14 -2.04 6.63 31.58 0.21 -1.83 16 7 C 0.09 1.75 3.96 30.22 0.12 1.87 16 8 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 9 C 0.46 12.32 7.06 71.23 0.50 12.82 16 10 O -0.52 -16.80 16.27 28.31 0.46 -16.34 16 11 O -0.34 -9.81 9.75 -45.09 -0.44 -10.25 16 12 C 0.06 1.57 5.94 71.24 0.42 2.00 16 13 C 0.51 18.64 7.91 87.66 0.69 19.33 16 14 O -0.57 -25.70 16.50 15.76 0.26 -25.44 16 15 N -0.70 -26.98 5.55 -466.79 -2.59 -29.57 16 16 C 0.23 11.10 4.50 85.63 0.38 11.48 16 17 C -0.55 -29.78 9.83 25.60 0.25 -29.53 16 18 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 19 C 0.02 1.39 5.47 84.66 0.46 1.86 16 20 N -0.93 -55.10 13.96 21.45 0.30 -54.81 16 21 Si 0.94 43.24 27.47 68.60 1.88 45.12 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 25 O -0.37 -8.03 10.30 -130.22 -1.34 -9.37 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.04 0.67 8.06 -2.39 -0.02 0.65 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.27 7.69 -2.39 -0.02 1.25 16 35 H 0.12 2.91 8.13 -2.38 -0.02 2.89 16 36 H 0.12 2.89 8.13 -2.39 -0.02 2.87 16 37 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 38 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 39 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 40 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -73.59 341.73 2.99 -70.60 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.21 Total: 14.79 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 4.25 Total: 15.26 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.29 Total: -84.38 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -1.06 Total: -61.40 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -73.59 2.99 -70.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.192 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds