Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 H 1.08996 * 109.87106 * 54.54576 * 3 2 1 5 5 C 1.54100 * 110.00285 * 175.64081 * 3 2 1 6 6 C 1.54988 * 104.25026 * 121.65805 * 5 3 2 7 7 C 1.54994 * 102.01593 * 20.66491 * 6 5 3 8 8 H 1.09000 * 110.61658 * 81.75508 * 7 6 5 9 9 C 1.50701 * 110.62056 * 204.59629 * 7 6 5 10 10 O 1.20819 * 120.00212 * 112.81851 * 9 7 6 11 11 O 1.34232 * 120.00006 * 292.82399 * 9 7 6 12 12 C 1.45188 * 117.00097 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47407 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46905 * 119.99897 * 21 19 17 24 24 H 1.48494 * 109.47159 * 240.00164 * 21 19 17 25 25 O 1.43749 * 109.87579 * 293.54460 * 3 2 1 26 26 H 1.09001 * 109.47529 * 300.00136 * 1 2 3 27 27 H 1.09002 * 109.47272 * 60.00409 * 1 2 3 28 28 H 1.09008 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47342 * 239.99412 * 2 1 3 30 30 H 1.09002 * 109.47272 * 119.99591 * 2 1 3 31 31 H 1.09004 * 110.48703 * 240.19572 * 5 3 2 32 32 H 1.08998 * 110.49160 * 2.71083 * 5 3 2 33 33 H 1.08997 * 110.84057 * 262.53764 * 6 5 3 34 34 H 1.09011 * 111.04787 * 138.88116 * 6 5 3 35 35 H 1.08998 * 109.47455 * 59.99491 * 12 11 9 36 36 H 1.09002 * 109.47382 * 299.99782 * 12 11 9 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96999 * 120.00067 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9900 0.8350 5 6 3.5770 1.4581 0.1101 6 6 4.0426 2.2178 -1.1581 7 6 2.7641 2.9999 -1.5533 8 1 2.6742 3.9118 -0.9630 9 6 2.7726 3.3216 -3.0256 10 8 1.9656 2.8049 -3.7615 11 8 3.6768 4.1820 -3.5194 12 6 3.6257 4.4450 -4.9464 13 6 4.7073 5.4275 -5.3152 14 8 5.4479 5.8635 -4.4594 15 7 4.8509 5.8225 -6.5958 16 6 5.9061 6.7730 -6.9552 17 6 5.8562 7.0422 -8.4371 18 1 5.1130 6.5539 -9.0499 19 6 6.7593 7.9121 -9.0105 20 7 7.6646 8.5064 -8.2643 21 14 6.6979 8.2454 -10.8475 22 1 5.5957 7.4584 -11.4568 23 1 6.4596 9.6925 -11.0803 24 1 7.9890 7.8505 -11.4656 25 8 1.6938 2.0833 -1.2393 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8898 1.9918 1.0076 32 1 3.9695 0.4413 0.1157 33 1 4.3302 1.5199 -1.9444 34 1 4.8605 2.9004 -0.9274 35 1 2.6525 4.8627 -5.2043 36 1 3.7780 3.5144 -5.4931 37 1 4.2582 5.4741 -7.2801 38 1 5.7559 7.7055 -6.4111 39 1 6.8776 6.3529 -6.6948 40 1 8.3002 9.1181 -8.6678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757137790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = -179.382656 kcal Electronic energy + Delta-G solvation = -21993.788910 eV Core-core repulsion = 18387.479850 eV Total energy + Delta-G solvation = -3606.309060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92884 -39.64215 -38.62000 -36.35453 -34.27334 -34.00489 -32.56362 -32.42368 -29.89466 -28.68230 -26.68386 -24.80452 -22.69475 -22.38708 -21.30951 -20.99606 -19.96598 -17.98632 -17.60790 -17.04405 -16.57224 -16.44380 -15.97669 -15.53809 -15.16136 -14.68736 -14.53832 -14.06460 -13.95119 -13.87638 -13.48484 -13.15795 -12.94723 -12.64107 -12.19862 -12.10168 -12.00651 -11.87972 -11.78076 -11.41628 -11.17677 -11.00474 -10.96963 -10.95890 -10.73730 -10.52558 -10.36167 -10.06074 -9.44148 -9.21099 -8.80592 -8.01431 -6.21463 -4.28757 2.01109 2.09009 3.14561 3.21403 3.28611 3.31614 3.52912 3.89615 4.11364 4.27687 4.33518 4.46894 4.54761 4.71328 4.76695 4.87518 4.95372 5.12110 5.13879 5.14824 5.21064 5.31008 5.32155 5.42682 5.43855 5.58535 5.62492 5.67659 5.83077 6.01549 6.24469 6.43337 7.20216 7.28167 7.43535 7.57014 7.64950 7.89935 8.47400 8.69018 8.93713 9.37698 10.88699 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050841 B = 0.002446 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.601444 B =11445.541945 C =11816.062681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.073 3.927 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.141 4.141 7 C 0.089 3.911 8 H 0.113 0.887 9 C 0.465 3.535 10 O -0.490 6.490 11 O -0.325 6.325 12 C 0.049 3.951 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 O -0.344 6.344 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 -15.411 16.587 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.016 3.984 4 H 0.093 0.907 5 C -0.189 4.189 6 C -0.179 4.179 7 C 0.030 3.970 8 H 0.130 0.870 9 C 0.306 3.694 10 O -0.376 6.376 11 O -0.241 6.241 12 C -0.028 4.028 13 C 0.283 3.717 14 O -0.412 6.412 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 O -0.264 6.264 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.608 -15.124 16.808 24.975 hybrid contribution -0.180 0.117 -1.396 1.412 sum -10.789 -15.007 15.412 24.065 Atomic orbital electron populations 1.21737 0.95135 1.01617 1.02442 1.21722 0.97053 0.94402 1.02739 1.22933 0.94281 0.94395 0.86792 0.90718 1.23069 0.95077 1.02242 0.98510 1.23119 0.96827 0.99608 0.98330 1.22446 0.89036 0.96035 0.89493 0.87000 1.23178 0.78542 0.76579 0.91090 1.90688 1.37648 1.49253 1.60029 1.86520 1.53195 1.58346 1.25998 1.22902 1.00707 1.00645 0.78571 1.19858 0.85048 0.82686 0.84089 1.90707 1.45238 1.56515 1.48706 1.46369 1.36222 1.46297 1.06736 1.19187 0.85041 0.87158 0.95546 1.21247 1.17179 1.27621 0.92257 0.91694 1.24962 0.94887 0.95307 0.98892 1.69981 1.17852 1.28601 1.35744 0.86329 0.78073 0.78173 0.84152 1.19597 1.20763 1.20762 1.89001 1.40738 1.56211 1.40413 0.92861 0.91764 0.92758 0.91007 0.90622 0.89885 0.89672 0.89802 0.88103 0.88378 0.88413 0.77379 0.95219 0.95234 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.82 37.16 0.37 -0.76 16 2 C -0.12 -0.86 5.43 -26.73 -0.15 -1.00 16 3 C 0.07 0.58 3.41 -26.16 -0.09 0.49 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -0.98 6.65 -25.11 -0.17 -1.15 16 6 C -0.14 -1.22 6.59 -24.63 -0.16 -1.38 16 7 C 0.09 0.97 3.87 -26.83 -0.10 0.86 16 8 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 9 C 0.47 6.63 7.33 36.01 0.26 6.90 16 10 O -0.49 -8.18 16.31 -25.24 -0.41 -8.59 16 11 O -0.33 -5.09 9.75 -45.91 -0.45 -5.54 16 12 C 0.05 0.75 5.94 36.01 0.21 0.96 16 13 C 0.50 9.93 7.91 -10.98 -0.09 9.84 16 14 O -0.53 -12.85 16.50 -14.11 -0.23 -13.09 16 15 N -0.71 -14.49 5.55 -61.47 -0.34 -14.83 16 16 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 17 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -25.70 13.29 55.43 0.74 -24.97 16 21 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 O -0.34 -4.00 10.09 -54.35 -0.55 -4.55 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 33 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 36 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -33.91 345.02 -7.60 -41.50 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.17 Total: 1.23 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.36 Total: 8.04 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.40 Total: -39.80 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.64 Total: -31.77 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.91 -7.60 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.879 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds