Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 H 1.08996 * 109.87106 * 54.54576 * 3 2 1 5 5 C 1.54100 * 110.00285 * 175.64081 * 3 2 1 6 6 C 1.54988 * 104.25026 * 121.65805 * 5 3 2 7 7 C 1.54994 * 102.01593 * 20.66491 * 6 5 3 8 8 H 1.09000 * 110.61658 * 81.75508 * 7 6 5 9 9 C 1.50701 * 110.62056 * 204.59629 * 7 6 5 10 10 O 1.20819 * 120.00212 * 112.81851 * 9 7 6 11 11 O 1.34232 * 120.00006 * 292.82399 * 9 7 6 12 12 C 1.45188 * 117.00097 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47407 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46905 * 119.99897 * 21 19 17 24 24 H 1.48494 * 109.47159 * 240.00164 * 21 19 17 25 25 O 1.43749 * 109.87579 * 293.54460 * 3 2 1 26 26 H 1.09001 * 109.47529 * 300.00136 * 1 2 3 27 27 H 1.09002 * 109.47272 * 60.00409 * 1 2 3 28 28 H 1.09008 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47342 * 239.99412 * 2 1 3 30 30 H 1.09002 * 109.47272 * 119.99591 * 2 1 3 31 31 H 1.09004 * 110.48703 * 240.19572 * 5 3 2 32 32 H 1.08998 * 110.49160 * 2.71083 * 5 3 2 33 33 H 1.08997 * 110.84057 * 262.53764 * 6 5 3 34 34 H 1.09011 * 111.04787 * 138.88116 * 6 5 3 35 35 H 1.08998 * 109.47455 * 59.99491 * 12 11 9 36 36 H 1.09002 * 109.47382 * 299.99782 * 12 11 9 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96999 * 120.00067 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9900 0.8350 5 6 3.5770 1.4581 0.1101 6 6 4.0426 2.2178 -1.1581 7 6 2.7641 2.9999 -1.5533 8 1 2.6742 3.9118 -0.9630 9 6 2.7726 3.3216 -3.0256 10 8 1.9656 2.8049 -3.7615 11 8 3.6768 4.1820 -3.5194 12 6 3.6257 4.4450 -4.9464 13 6 4.7073 5.4275 -5.3152 14 8 5.4479 5.8635 -4.4594 15 7 4.8509 5.8225 -6.5958 16 6 5.9061 6.7730 -6.9552 17 6 5.8562 7.0422 -8.4371 18 1 5.1130 6.5539 -9.0499 19 6 6.7593 7.9121 -9.0105 20 7 7.6646 8.5064 -8.2643 21 14 6.6979 8.2454 -10.8475 22 1 5.5957 7.4584 -11.4568 23 1 6.4596 9.6925 -11.0803 24 1 7.9890 7.8505 -11.4656 25 8 1.6938 2.0833 -1.2393 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8898 1.9918 1.0076 32 1 3.9695 0.4413 0.1157 33 1 4.3302 1.5199 -1.9444 34 1 4.8605 2.9004 -0.9274 35 1 2.6525 4.8627 -5.2043 36 1 3.7780 3.5144 -5.4931 37 1 4.2582 5.4741 -7.2801 38 1 5.7559 7.7055 -6.4111 39 1 6.8776 6.3529 -6.6948 40 1 8.3002 9.1181 -8.6678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757137790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = -201.894221 kcal Electronic energy + Delta-G solvation = -21994.765085 eV Core-core repulsion = 18387.479850 eV Total energy + Delta-G solvation = -3607.285235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00739 -40.71799 -40.06264 -37.59962 -36.19596 -34.63251 -34.42606 -33.25399 -31.12541 -29.85634 -28.37513 -25.66953 -24.55712 -23.07092 -22.09283 -21.88438 -21.66685 -19.32940 -18.96684 -18.07050 -18.04225 -17.34904 -17.22301 -16.99451 -16.71050 -16.12868 -16.06985 -15.14597 -14.80315 -14.58385 -14.49167 -14.40772 -14.16780 -14.02595 -13.79394 -13.64991 -13.01233 -12.92077 -12.79127 -12.76269 -12.46177 -12.23241 -12.04007 -11.98732 -11.75092 -11.59151 -11.48858 -11.46850 -10.94389 -10.83724 -10.77283 -9.94503 -8.30415 -6.46685 0.91417 0.97792 1.44357 1.44610 1.52676 1.58340 2.27911 2.45988 2.90204 3.04952 3.36408 3.50021 3.68162 3.82271 3.85287 3.96767 4.00656 4.04994 4.13946 4.29102 4.38187 4.56283 4.76178 4.88430 4.89601 4.98978 5.04085 5.09089 5.12426 5.14613 5.21412 5.25278 5.40731 5.43433 5.61730 5.77156 5.81482 6.48884 6.62273 6.76040 7.19166 7.33737 8.81841 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050841 B = 0.002446 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.601444 B =11445.541945 C =11816.062681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.065 3.935 4 H 0.089 0.911 5 C -0.142 4.142 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.133 0.867 9 C 0.467 3.533 10 O -0.518 6.518 11 O -0.339 6.339 12 C 0.059 3.941 13 C 0.502 3.498 14 O -0.581 6.581 15 N -0.699 5.699 16 C 0.266 3.734 17 C -0.556 4.556 18 H 0.085 0.915 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.985 3.015 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.279 1.279 25 O -0.372 6.372 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.412 0.588 38 H -0.006 1.006 39 H -0.006 1.006 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -16.616 16.623 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.008 3.992 4 H 0.107 0.893 5 C -0.179 4.179 6 C -0.179 4.179 7 C 0.028 3.972 8 H 0.150 0.850 9 C 0.310 3.690 10 O -0.406 6.406 11 O -0.254 6.254 12 C -0.018 4.018 13 C 0.287 3.713 14 O -0.461 6.461 15 N -0.350 5.350 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.808 3.192 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.205 1.205 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.249 0.751 38 H 0.011 0.989 39 H 0.012 0.988 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.660 -16.368 16.845 26.223 hybrid contribution 0.110 0.459 -1.321 1.402 sum -11.551 -15.909 15.524 25.050 Atomic orbital electron populations 1.21731 0.95628 1.01940 1.01615 1.21768 0.96636 0.94131 1.03330 1.23207 0.95476 0.94676 0.85791 0.89285 1.23078 0.93810 1.02944 0.98088 1.23155 0.96011 0.99546 0.99154 1.22671 0.90157 0.97233 0.87131 0.84971 1.23893 0.77383 0.75374 0.92333 1.90669 1.38674 1.50262 1.60991 1.86520 1.53967 1.58963 1.25982 1.22774 0.99461 1.00309 0.79216 1.20585 0.85217 0.82440 0.83018 1.90684 1.47265 1.58256 1.49901 1.46050 1.35451 1.45566 1.07950 1.18645 0.85023 0.86486 0.95452 1.21638 1.17604 1.27683 0.92471 0.89656 1.26049 0.94283 0.94914 1.04335 1.70132 1.18892 1.29475 1.38269 0.85103 0.78531 0.78082 0.77457 1.17724 1.20514 1.20479 1.88986 1.41340 1.56693 1.42177 0.91878 0.94335 0.91907 0.92301 0.88046 0.87695 0.88481 0.90881 0.87310 0.85902 0.85867 0.75133 0.98851 0.98815 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.82 71.98 0.71 -1.37 16 2 C -0.12 -1.50 5.43 30.59 0.17 -1.33 16 3 C 0.07 0.90 3.41 30.97 0.11 1.01 16 4 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 5 C -0.14 -1.46 6.65 31.65 0.21 -1.25 16 6 C -0.14 -2.23 6.59 31.96 0.21 -2.02 16 7 C 0.09 1.79 3.87 30.53 0.12 1.91 16 8 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 9 C 0.47 12.98 7.33 71.24 0.52 13.50 16 10 O -0.52 -16.98 16.31 28.19 0.46 -16.52 16 11 O -0.34 -10.36 9.75 -45.09 -0.44 -10.79 16 12 C 0.06 1.73 5.94 71.24 0.42 2.15 16 13 C 0.50 19.96 7.91 87.66 0.69 20.66 16 14 O -0.58 -28.72 16.50 15.76 0.26 -28.46 16 15 N -0.70 -28.71 5.55 -466.79 -2.59 -31.30 16 16 C 0.27 14.27 5.43 85.63 0.46 14.74 16 17 C -0.56 -29.63 9.28 25.60 0.24 -29.40 16 18 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.22 5.46 84.66 0.46 0.68 16 20 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 21 Si 0.98 41.80 29.54 68.60 2.03 43.83 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 O -0.37 -8.30 10.09 -130.70 -1.32 -9.62 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 0.71 7.89 -2.39 -0.02 0.70 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.79 7.70 -2.39 -0.02 0.77 16 33 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 36 H 0.12 3.03 8.13 -2.39 -0.02 3.01 16 37 H 0.41 13.70 8.32 -92.71 -0.77 12.93 16 38 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -75.64 345.02 3.27 -72.37 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.27 Total: 16.13 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 4.32 Total: 19.27 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.30 Total: -86.21 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -1.04 Total: -65.40 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.64 3.27 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.523 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds