Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 H 1.08999 * 110.27735 * 52.90835 * 3 2 1 5 5 C 1.54947 * 110.31364 * 175.00316 * 3 2 1 6 6 C 1.55300 * 100.94579 * 155.35795 * 5 3 2 7 7 C 1.54379 * 102.25290 * 325.86931 * 6 5 3 8 8 H 1.09000 * 109.82679 * 261.75305 * 7 6 5 9 9 C 1.50699 * 109.83350 * 140.87156 * 7 6 5 10 10 O 1.20825 * 119.99860 * 244.99562 * 9 7 6 11 11 O 1.34229 * 120.00091 * 64.99767 * 9 7 6 12 12 C 1.45204 * 116.99722 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.46692 * 180.02562 * 12 11 9 14 14 O 1.21286 * 120.00120 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00000 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00091 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 O 1.43231 * 107.59118 * 21.35235 * 7 6 5 26 26 H 1.09000 * 109.46701 * 300.00140 * 1 2 3 27 27 H 1.08998 * 109.47160 * 59.99795 * 1 2 3 28 28 H 1.08994 * 109.46637 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47234 * 240.00382 * 2 1 3 30 30 H 1.08993 * 109.47324 * 119.99786 * 2 1 3 31 31 H 1.08999 * 111.12504 * 37.43547 * 5 3 2 32 32 H 1.09004 * 111.11801 * 273.28167 * 5 3 2 33 33 H 1.09002 * 110.85120 * 207.67251 * 6 5 3 34 34 H 1.09008 * 110.84717 * 84.05307 * 6 5 3 35 35 H 1.08998 * 109.47132 * 60.00124 * 12 11 9 36 36 H 1.09002 * 109.46676 * 299.99461 * 12 11 9 37 37 H 0.97003 * 119.99349 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.47166 * 60.00164 * 16 15 13 39 39 H 1.08994 * 109.47507 * 299.99870 * 16 15 13 40 40 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0042 0.8156 5 6 3.5841 1.4671 0.1266 6 6 3.9115 2.8385 -0.5246 7 6 2.8319 2.9458 -1.6229 8 1 3.2496 2.6419 -2.5827 9 6 2.3302 4.3641 -1.7098 10 8 1.1824 4.6171 -1.4298 11 8 3.1584 5.3464 -2.0984 12 6 2.6070 6.6883 -2.1587 13 6 3.6749 7.6502 -2.6117 14 8 4.7910 7.2449 -2.8590 15 7 3.3898 8.9611 -2.7421 16 6 4.4280 9.8963 -3.1820 17 6 3.8553 11.2888 -3.2458 18 1 2.8215 11.4601 -2.9844 19 6 4.6529 12.3452 -3.6319 20 7 4.1547 13.5612 -3.6824 21 14 6.4412 12.0490 -4.0834 22 1 6.5439 11.7632 -5.5370 23 1 7.2403 13.2580 -3.7589 24 1 6.9609 10.8907 -3.3131 25 8 1.7570 2.0714 -1.2601 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.0372 0.6485 -0.4326 32 1 3.8929 1.4446 1.1717 33 1 4.9102 2.8320 -0.9614 34 1 3.8092 3.6463 0.2001 35 1 2.2507 6.9794 -1.1705 36 1 1.7769 6.7085 -2.8649 37 1 2.4971 9.2851 -2.5447 38 1 4.7847 9.6048 -4.1699 39 1 5.2579 9.8764 -2.4756 40 1 4.7157 14.3043 -3.9543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757137791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -177.220484 kcal Electronic energy + Delta-G solvation = -22090.441201 eV Core-core repulsion = 18484.225899 eV Total energy + Delta-G solvation = -3606.215302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02664 -39.65905 -38.72620 -36.37452 -34.39771 -34.07222 -32.65352 -32.44645 -30.03187 -28.94818 -27.09770 -24.78808 -22.45209 -22.20047 -21.67299 -20.65273 -20.14545 -18.26054 -17.69343 -16.92828 -16.90317 -16.63709 -16.08026 -15.70992 -15.15576 -14.70715 -14.37687 -14.27250 -13.88503 -13.77683 -13.41386 -13.25795 -13.09994 -12.72310 -12.40967 -12.30010 -12.18571 -12.06745 -11.90084 -11.48204 -11.25161 -11.08990 -11.04056 -10.85415 -10.75587 -10.74040 -10.01889 -9.91905 -9.55993 -9.36457 -8.83552 -8.29363 -6.25695 -4.28865 2.00431 2.14774 3.00071 3.23970 3.30513 3.36221 3.38384 3.79403 3.98743 4.21874 4.29338 4.44813 4.57221 4.66858 4.75032 4.86540 4.98155 5.03854 5.07441 5.08789 5.15198 5.20469 5.31520 5.36014 5.41629 5.52032 5.59855 5.62497 5.80701 5.98982 6.22537 6.48426 6.70915 6.98736 7.07032 7.29738 7.60484 8.02799 8.39230 8.65789 8.77713 9.33204 10.86061 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047555 B = 0.002599 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.654666 B =10770.403918 C =11183.073194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.074 3.926 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.142 4.142 7 C 0.096 3.904 8 H 0.124 0.876 9 C 0.445 3.555 10 O -0.493 6.493 11 O -0.328 6.328 12 C 0.049 3.951 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.699 5.699 16 C 0.222 3.778 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 O -0.344 6.344 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.024 0.976 39 H 0.028 0.972 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -26.224 8.176 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.016 3.984 4 H 0.093 0.907 5 C -0.189 4.189 6 C -0.180 4.180 7 C 0.036 3.964 8 H 0.141 0.859 9 C 0.286 3.714 10 O -0.379 6.379 11 O -0.244 6.244 12 C -0.029 4.029 13 C 0.286 3.714 14 O -0.414 6.414 15 N -0.350 5.350 16 C 0.101 3.899 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 O -0.263 6.263 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.233 0.767 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.098 -26.209 7.911 27.552 hybrid contribution 0.382 0.511 -0.066 0.642 sum -2.716 -25.698 7.846 27.006 Atomic orbital electron populations 1.21743 0.95075 1.01558 1.02614 1.21649 0.97063 0.94156 1.02801 1.23217 0.94408 0.94258 0.86468 0.90699 1.23372 0.95544 0.97328 1.02644 1.23082 0.99368 0.98500 0.97054 1.22171 0.87806 0.84331 1.02059 0.85869 1.24215 0.84684 0.88592 0.73905 1.90680 1.19068 1.83736 1.44426 1.86540 1.42786 1.16593 1.78440 1.22834 0.96503 0.79476 1.04056 1.19914 0.88688 0.83412 0.79404 1.90697 1.22688 1.77732 1.50322 1.46072 1.16230 1.05986 1.66680 1.19555 0.87320 0.88002 0.95059 1.21068 0.99736 0.89377 1.48243 0.90119 1.24798 0.98788 0.94744 0.94285 1.69875 1.36847 0.99309 1.46698 0.86809 0.84681 0.78422 0.79735 1.19775 1.20837 1.18478 1.88551 1.42022 1.57610 1.38111 0.92757 0.91832 0.92720 0.90966 0.90515 0.89557 0.89198 0.87937 0.89728 0.88343 0.88256 0.76681 0.95860 0.95425 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.85 37.16 0.37 -0.73 16 2 C -0.12 -0.77 5.66 -26.73 -0.15 -0.92 16 3 C 0.07 0.59 3.41 -25.70 -0.09 0.51 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -0.92 6.57 -24.48 -0.16 -1.08 16 6 C -0.14 -1.13 6.53 -24.79 -0.16 -1.29 16 7 C 0.10 0.99 4.06 -27.16 -0.11 0.88 16 8 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.44 6.12 7.14 36.01 0.26 6.38 16 10 O -0.49 -8.01 16.27 -25.41 -0.41 -8.43 16 11 O -0.33 -4.95 9.75 -45.90 -0.45 -5.40 16 12 C 0.05 0.72 5.94 36.01 0.21 0.93 16 13 C 0.50 9.51 7.91 -10.98 -0.09 9.43 16 14 O -0.54 -12.20 16.50 -14.11 -0.23 -12.43 16 15 N -0.70 -13.82 5.55 -61.48 -0.34 -14.16 16 16 C 0.22 5.36 4.50 -5.20 -0.02 5.33 16 17 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 21 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 O -0.34 -3.85 10.01 -54.93 -0.55 -4.40 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.56 7.99 -51.93 -0.42 0.15 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.43 8.06 -51.93 -0.42 0.01 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.72 7.84 -51.92 -0.41 0.32 16 35 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.40 6.82 8.32 -40.82 -0.34 6.48 16 38 H 0.02 0.58 7.58 -51.93 -0.39 0.19 16 39 H 0.03 0.70 7.19 -51.93 -0.37 0.33 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -34.07 341.67 -7.27 -41.33 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.15 Total: 0.84 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.38 Total: 6.44 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.43 Total: -39.54 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.64 Total: -30.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.07 -7.27 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.887 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds