Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 H 1.08999 * 110.27735 * 52.90835 * 3 2 1 5 5 C 1.54947 * 110.31364 * 175.00316 * 3 2 1 6 6 C 1.55300 * 100.94579 * 155.35795 * 5 3 2 7 7 C 1.54379 * 102.25290 * 325.86931 * 6 5 3 8 8 H 1.09000 * 109.82679 * 261.75305 * 7 6 5 9 9 C 1.50699 * 109.83350 * 140.87156 * 7 6 5 10 10 O 1.20825 * 119.99860 * 244.99562 * 9 7 6 11 11 O 1.34229 * 120.00091 * 64.99767 * 9 7 6 12 12 C 1.45204 * 116.99722 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.46692 * 180.02562 * 12 11 9 14 14 O 1.21286 * 120.00120 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00000 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00091 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 O 1.43231 * 107.59118 * 21.35235 * 7 6 5 26 26 H 1.09000 * 109.46701 * 300.00140 * 1 2 3 27 27 H 1.08998 * 109.47160 * 59.99795 * 1 2 3 28 28 H 1.08994 * 109.46637 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47234 * 240.00382 * 2 1 3 30 30 H 1.08993 * 109.47324 * 119.99786 * 2 1 3 31 31 H 1.08999 * 111.12504 * 37.43547 * 5 3 2 32 32 H 1.09004 * 111.11801 * 273.28167 * 5 3 2 33 33 H 1.09002 * 110.85120 * 207.67251 * 6 5 3 34 34 H 1.09008 * 110.84717 * 84.05307 * 6 5 3 35 35 H 1.08998 * 109.47132 * 60.00124 * 12 11 9 36 36 H 1.09002 * 109.46676 * 299.99461 * 12 11 9 37 37 H 0.97003 * 119.99349 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.47166 * 60.00164 * 16 15 13 39 39 H 1.08994 * 109.47507 * 299.99870 * 16 15 13 40 40 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0042 0.8156 5 6 3.5841 1.4671 0.1266 6 6 3.9115 2.8385 -0.5246 7 6 2.8319 2.9458 -1.6229 8 1 3.2496 2.6419 -2.5827 9 6 2.3302 4.3641 -1.7098 10 8 1.1824 4.6171 -1.4298 11 8 3.1584 5.3464 -2.0984 12 6 2.6070 6.6883 -2.1587 13 6 3.6749 7.6502 -2.6117 14 8 4.7910 7.2449 -2.8590 15 7 3.3898 8.9611 -2.7421 16 6 4.4280 9.8963 -3.1820 17 6 3.8553 11.2888 -3.2458 18 1 2.8215 11.4601 -2.9844 19 6 4.6529 12.3452 -3.6319 20 7 4.1547 13.5612 -3.6824 21 14 6.4412 12.0490 -4.0834 22 1 6.5439 11.7632 -5.5370 23 1 7.2403 13.2580 -3.7589 24 1 6.9609 10.8907 -3.3131 25 8 1.7570 2.0714 -1.2601 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.0372 0.6485 -0.4326 32 1 3.8929 1.4446 1.1717 33 1 4.9102 2.8320 -0.9614 34 1 3.8092 3.6463 0.2001 35 1 2.2507 6.9794 -1.1705 36 1 1.7769 6.7085 -2.8649 37 1 2.4971 9.2851 -2.5447 38 1 4.7847 9.6048 -4.1699 39 1 5.2579 9.8764 -2.4756 40 1 4.7157 14.3043 -3.9543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757137791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = -199.961186 kcal Electronic energy + Delta-G solvation = -22091.427312 eV Core-core repulsion = 18484.225899 eV Total energy + Delta-G solvation = -3607.201412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04198 -40.76007 -40.03213 -37.56454 -36.21802 -34.66731 -34.47376 -33.30799 -31.32863 -30.07554 -28.61720 -25.57819 -24.12092 -22.95981 -22.49931 -21.75615 -21.47902 -19.44248 -19.14392 -18.26994 -17.98817 -17.66466 -17.23096 -16.96921 -16.76771 -16.13182 -15.94505 -15.02082 -14.92834 -14.71607 -14.54273 -14.36728 -14.30006 -13.98443 -13.80575 -13.72359 -13.10865 -13.06106 -12.87120 -12.71099 -12.46016 -12.12825 -11.97615 -11.93345 -11.78178 -11.68554 -11.61681 -11.53095 -11.02652 -10.93015 -10.68754 -10.06089 -8.40569 -6.48500 0.95435 1.05874 1.33934 1.36535 1.47153 1.49417 2.27795 2.35435 2.74318 2.94696 3.34399 3.50061 3.64732 3.69758 3.90377 3.98500 3.99627 4.07623 4.19196 4.29930 4.43585 4.51073 4.73384 4.76433 4.85331 4.93546 4.98311 4.99575 5.09291 5.12250 5.13257 5.22902 5.26097 5.37892 5.43187 5.81705 6.04539 6.49784 6.53491 6.69821 7.09633 7.24829 8.73993 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047555 B = 0.002599 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.654666 B =10770.403918 C =11183.073194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C 0.063 3.937 4 H 0.064 0.936 5 C -0.139 4.139 6 C -0.141 4.141 7 C 0.094 3.906 8 H 0.143 0.857 9 C 0.447 3.553 10 O -0.523 6.523 11 O -0.339 6.339 12 C 0.056 3.944 13 C 0.507 3.493 14 O -0.575 6.575 15 N -0.697 5.697 16 C 0.232 3.768 17 C -0.549 4.549 18 H 0.060 0.940 19 C 0.025 3.975 20 N -0.931 5.931 21 Si 0.939 3.061 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.257 1.257 25 O -0.367 6.367 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.412 0.588 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 -28.361 8.681 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C 0.006 3.994 4 H 0.082 0.918 5 C -0.176 4.176 6 C -0.179 4.179 7 C 0.034 3.966 8 H 0.160 0.840 9 C 0.290 3.710 10 O -0.411 6.411 11 O -0.255 6.255 12 C -0.021 4.021 13 C 0.293 3.707 14 O -0.455 6.455 15 N -0.349 5.349 16 C 0.109 3.891 17 C -0.587 4.587 18 H 0.078 0.922 19 C -0.175 4.175 20 N -0.569 5.569 21 Si 0.762 3.238 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.181 1.181 25 O -0.286 6.286 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.249 0.751 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.091 -28.365 8.430 29.665 hybrid contribution -0.047 1.153 -0.189 1.170 sum -2.139 -27.211 8.241 28.512 Atomic orbital electron populations 1.21752 0.96013 1.02029 1.01349 1.21669 0.96223 0.93263 1.04078 1.23438 0.96129 0.94769 0.85046 0.91790 1.23375 0.93698 0.96620 1.03901 1.23137 0.99179 0.99363 0.96223 1.22452 0.88183 0.81989 1.03954 0.83953 1.25022 0.84138 0.89346 0.72531 1.90662 1.20327 1.84196 1.45959 1.86543 1.43464 1.16758 1.78698 1.22735 0.94877 0.78873 1.05622 1.20478 0.88986 0.83253 0.78007 1.90676 1.24616 1.78296 1.51874 1.45874 1.16080 1.06139 1.66782 1.19182 0.87952 0.87358 0.94580 1.21275 0.99008 0.90936 1.47489 0.92170 1.25629 1.03088 0.94502 0.94325 1.69982 1.38621 1.00286 1.48039 0.85833 0.79631 0.78568 0.79728 1.18950 1.19918 1.18137 1.88543 1.42950 1.57667 1.39481 0.92969 0.94140 0.91387 0.90620 0.88155 0.87826 0.87362 0.86447 0.90705 0.86148 0.86255 0.75143 0.96493 0.96326 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.85 71.98 0.71 -1.36 16 2 C -0.12 -1.25 5.66 30.59 0.17 -1.07 16 3 C 0.06 0.92 3.41 31.26 0.11 1.02 16 4 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.14 -1.28 6.57 32.05 0.21 -1.07 16 6 C -0.14 -1.94 6.53 31.85 0.21 -1.73 16 7 C 0.09 1.80 4.06 30.32 0.12 1.92 16 8 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 9 C 0.45 11.86 7.14 71.24 0.51 12.36 16 10 O -0.52 -16.75 16.27 28.33 0.46 -16.29 16 11 O -0.34 -9.80 9.75 -45.06 -0.44 -10.24 16 12 C 0.06 1.56 5.94 71.24 0.42 1.98 16 13 C 0.51 18.67 7.91 87.66 0.69 19.36 16 14 O -0.57 -25.70 16.50 15.75 0.26 -25.44 16 15 N -0.70 -27.05 5.55 -466.80 -2.59 -29.64 16 16 C 0.23 11.11 4.50 85.64 0.38 11.49 16 17 C -0.55 -29.81 9.83 25.60 0.25 -29.56 16 18 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 19 C 0.03 1.40 5.47 84.66 0.46 1.86 16 20 N -0.93 -55.12 13.96 21.45 0.30 -54.82 16 21 Si 0.94 43.24 27.47 68.60 1.88 45.13 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 25 O -0.37 -7.87 10.01 -130.14 -1.30 -9.17 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.04 0.72 7.99 -2.39 -0.02 0.70 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.64 8.06 -2.39 -0.02 0.62 16 32 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.17 7.84 -2.38 -0.02 1.15 16 35 H 0.12 2.88 8.13 -2.39 -0.02 2.86 16 36 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 37 H 0.41 13.78 8.32 -92.71 -0.77 13.01 16 38 H 0.02 0.84 7.58 -2.38 -0.02 0.83 16 39 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.39 341.67 3.04 -70.35 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.21 Total: 14.91 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 4.26 Total: 15.22 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.29 Total: -84.46 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -1.02 Total: -61.14 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -73.39 3.04 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757137791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.613 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds