Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47002 * 270.00158 * 3 2 1 5 5 H 1.48504 * 109.46856 * 29.99988 * 3 2 1 6 6 H 1.48498 * 109.47068 * 150.00129 * 3 2 1 7 7 C 1.38809 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00120 * 200.66578 * 7 2 1 9 9 N 1.36936 * 120.00467 * 20.66520 * 7 2 1 10 10 C 1.46505 * 119.99666 * 37.92059 * 9 7 2 11 11 N 1.46501 * 109.46335 * 90.00690 * 10 9 7 12 12 C 1.34564 * 126.74760 * 95.00480 * 11 10 9 13 13 N 1.30642 * 108.30183 * 179.97438 * 12 11 10 14 14 C 1.33995 * 109.78480 * 359.97438 * 13 12 11 15 15 C 1.48365 * 125.65066 * 179.97438 * 14 13 12 16 16 C 1.39332 * 119.72447 * 0.02721 * 15 14 13 17 17 C 1.38400 * 119.06647 * 179.72553 * 16 15 14 18 18 C 1.38789 * 118.51279 * 359.97438 * 17 16 15 19 19 C 1.38254 * 119.36319 * 0.02562 * 18 17 16 20 20 N 1.31763 * 120.89474 * 359.97438 * 19 18 17 21 21 N 1.31512 * 108.70018 * 0.22993 * 14 13 12 22 22 C 1.46497 * 120.00403 * 217.93157 * 9 7 2 23 23 C 1.52997 * 117.50013 * 14.10309 * 22 9 7 24 24 C 1.53003 * 60.00207 * 252.51212 * 23 22 9 25 25 H 0.96993 * 119.99856 * 354.96517 * 1 2 3 26 26 H 1.09000 * 109.47499 * 330.01040 * 10 9 7 27 27 H 1.09000 * 109.47417 * 210.00333 * 10 9 7 28 28 H 1.08005 * 125.84215 * 359.97438 * 12 11 10 29 29 H 1.07996 * 120.46268 * 359.73760 * 16 15 14 30 30 H 1.07993 * 120.74317 * 180.02562 * 17 16 15 31 31 H 1.07994 * 120.31997 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.55074 * 179.97438 * 19 18 17 33 33 H 1.09003 * 115.55256 * 159.80987 * 22 9 7 34 34 H 1.09006 * 117.49936 * 359.97438 * 23 22 9 35 35 H 1.09001 * 117.50485 * 145.02372 * 23 22 9 36 36 H 1.08992 * 117.49756 * 252.51157 * 24 23 22 37 37 H 1.08997 * 117.51973 * 107.47751 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0382 -1.2323 0.3296 9 7 1.3918 -2.3497 -0.4195 10 6 0.4603 -2.3091 -1.5496 11 7 1.1945 -2.5411 -2.7960 12 6 1.3519 -3.7172 -3.4307 13 7 2.0669 -3.5113 -4.5046 14 6 2.3875 -2.2134 -4.5941 15 6 3.1923 -1.5940 -5.6757 16 6 3.6810 -2.3856 -6.7130 17 6 4.4253 -1.7928 -7.7179 18 6 4.6564 -0.4258 -7.6528 19 6 4.1412 0.2991 -6.5943 20 7 3.4356 -0.2903 -5.6504 21 7 1.8753 -1.5803 -3.5614 22 6 1.6614 -3.6180 0.2623 23 6 2.3676 -3.5551 1.6181 24 6 3.1218 -4.0575 0.3853 25 1 -0.4849 0.8368 0.0737 26 1 -0.0217 -1.3323 -1.5883 27 1 -0.2968 -3.0832 -1.4245 28 1 0.9551 -4.6683 -3.1076 29 1 3.4815 -3.4468 -6.7325 30 1 4.8169 -2.3805 -8.5349 31 1 5.2330 0.0669 -8.4216 32 1 4.3195 1.3630 -6.5404 33 1 0.9118 -4.3966 0.1206 34 1 2.6320 -2.5700 2.0026 35 1 2.0826 -4.2922 2.3688 36 1 3.3329 -5.1251 0.3249 37 1 3.8819 -3.4031 -0.0414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762485523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = 181.558816 kcal Electronic energy + Delta-G solvation = -21835.732324 eV Core-core repulsion = 18616.969283 eV Total energy + Delta-G solvation = -3218.763042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.23367 -39.70645 -37.27955 -34.16249 -32.72389 -32.35609 -31.30869 -30.40771 -29.54036 -25.93837 -24.26740 -23.47893 -23.18671 -21.54343 -20.96435 -20.41154 -19.96291 -17.33982 -16.74801 -16.04623 -15.87595 -15.65118 -15.20182 -14.80536 -14.46514 -14.01317 -13.87487 -13.61712 -13.46404 -12.99612 -12.91562 -12.20065 -11.77086 -11.64172 -11.17840 -11.13771 -10.92418 -10.74418 -10.53017 -10.15496 -10.00170 -9.89043 -9.69151 -9.46853 -9.45723 -9.17101 -9.01784 -8.64072 -8.28675 -6.93950 -6.13989 -3.68788 0.99951 1.41087 2.50891 3.20273 3.35282 3.39671 3.41468 3.46695 4.08646 4.27165 4.29644 4.74045 4.79314 4.90046 4.95560 5.06485 5.15824 5.22014 5.30807 5.50646 5.59988 5.66540 5.87566 5.90212 5.95268 6.04580 6.20422 6.29666 6.32864 6.39891 6.65267 6.78445 6.83202 7.01054 7.04156 7.17059 7.61931 7.68979 8.14691 8.21150 8.79114 8.82966 9.44894 9.93787 10.92410 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.005663 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.849981 B = 4942.875791 C = 6001.939008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.034 3.966 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.273 4.273 8 H 0.065 0.935 9 N -0.526 5.526 10 C 0.345 3.655 11 N -0.352 5.352 12 C 0.231 3.769 13 N -0.549 5.549 14 C 0.213 3.787 15 C 0.227 3.773 16 C -0.137 4.137 17 C -0.081 4.081 18 C -0.178 4.178 19 C 0.101 3.899 20 N -0.458 5.458 21 N -0.242 5.242 22 C 0.111 3.889 23 C -0.183 4.183 24 C -0.220 4.220 25 H 0.264 0.736 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.207 0.793 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -5.865 -9.938 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.168 4.168 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.402 4.402 8 H 0.083 0.917 9 N -0.241 5.241 10 C 0.139 3.861 11 N -0.150 5.150 12 C -0.067 4.067 13 N -0.278 5.278 14 C -0.067 4.067 15 C 0.088 3.912 16 C -0.159 4.159 17 C -0.107 4.107 18 C -0.199 4.199 19 C -0.058 4.058 20 N -0.168 5.168 21 N -0.074 5.074 22 C 0.003 3.997 23 C -0.222 4.222 24 C -0.261 4.261 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.095 0.905 28 H 0.224 0.776 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.522 -4.665 -9.180 10.883 hybrid contribution 0.781 0.050 -0.365 0.863 sum 4.302 -4.615 -9.545 11.441 Atomic orbital electron populations 1.69764 1.05823 1.27183 1.49952 1.25187 0.95159 0.99239 0.97205 0.86223 0.79206 0.82264 0.78678 1.19969 1.21486 1.20194 1.18883 0.94710 0.84453 1.42155 0.91717 1.43870 1.49782 1.03491 1.26934 1.22093 0.86989 1.05138 0.71898 1.53445 1.36934 1.04357 1.20244 1.25697 0.97109 0.93724 0.90127 1.70191 1.19579 1.16400 1.21676 1.21613 1.01546 0.88591 0.94937 1.18193 0.93562 0.88654 0.90753 1.22044 0.97936 1.01954 0.93936 1.21500 0.96348 0.94859 0.97991 1.22184 1.02223 0.95158 1.00318 1.22741 0.93170 1.00391 0.89485 1.67630 1.12624 1.10529 1.26022 1.78519 1.10620 1.14763 1.03496 1.21293 0.92152 0.90041 0.96238 1.23065 1.05554 1.02437 0.91153 1.23332 0.99039 0.99384 1.04324 0.92577 0.84645 0.90481 0.77649 0.83707 0.84681 0.84889 0.82612 0.88792 0.88006 0.90300 0.90506 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.44 55.49 0.64 -23.37 16 2 C 0.03 0.92 4.97 -17.43 -0.09 0.83 16 3 Si 0.91 22.06 29.61 -169.99 -5.03 17.03 16 4 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.27 -7.16 8.04 -15.06 -0.12 -7.28 16 8 H 0.07 1.77 7.22 -52.48 -0.38 1.39 16 9 N -0.53 -12.19 3.02 -169.34 -0.51 -12.70 16 10 C 0.35 7.53 6.69 -63.74 -0.43 7.10 16 11 N -0.35 -7.51 3.88 -65.84 -0.26 -7.77 16 12 C 0.23 4.18 12.64 -90.69 -1.15 3.03 16 13 N -0.55 -10.71 10.80 -12.38 -0.13 -10.84 16 14 C 0.21 4.57 7.86 -156.62 -1.23 3.34 16 15 C 0.23 4.32 6.75 -82.94 -0.56 3.76 16 16 C -0.14 -2.03 9.73 -39.11 -0.38 -2.41 16 17 C -0.08 -0.94 10.17 -39.32 -0.40 -1.34 16 18 C -0.18 -2.01 10.11 -39.37 -0.40 -2.41 16 19 C 0.10 1.43 11.17 -17.57 -0.20 1.24 16 20 N -0.46 -8.78 10.27 -9.77 -0.10 -8.88 16 21 N -0.24 -5.84 12.69 32.10 0.41 -5.43 16 22 C 0.11 2.17 6.62 -67.93 -0.45 1.72 16 23 C -0.18 -3.43 9.81 -26.73 -0.26 -3.69 16 24 C -0.22 -4.07 10.08 -26.73 -0.27 -4.34 16 25 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 26 H 0.14 3.43 5.51 -51.93 -0.29 3.15 16 27 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 28 H 0.21 2.69 8.06 -52.48 -0.42 2.27 16 29 H 0.15 2.01 7.83 -52.49 -0.41 1.60 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.10 2.15 6.96 -51.93 -0.36 1.79 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.78 7.99 -51.93 -0.42 1.37 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -31.84 326.13 -10.37 -42.21 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.36 Total: 5.29 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -5.93 Total: -0.45 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: 0.04 Total: -68.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.84 -10.37 -42.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762485523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.764 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds