Wall clock time and date at job start Tue Mar 31 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47002 * 270.00158 * 3 2 1 5 5 H 1.48504 * 109.46856 * 29.99988 * 3 2 1 6 6 H 1.48498 * 109.47068 * 150.00129 * 3 2 1 7 7 C 1.38809 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00120 * 200.66578 * 7 2 1 9 9 N 1.36936 * 120.00467 * 20.66520 * 7 2 1 10 10 C 1.46505 * 119.99666 * 37.92059 * 9 7 2 11 11 N 1.46501 * 109.46335 * 90.00690 * 10 9 7 12 12 C 1.34564 * 126.74760 * 95.00480 * 11 10 9 13 13 N 1.30642 * 108.30183 * 179.97438 * 12 11 10 14 14 C 1.33995 * 109.78480 * 359.97438 * 13 12 11 15 15 C 1.48365 * 125.65066 * 179.97438 * 14 13 12 16 16 C 1.39332 * 119.72447 * 0.02721 * 15 14 13 17 17 C 1.38400 * 119.06647 * 179.72553 * 16 15 14 18 18 C 1.38789 * 118.51279 * 359.97438 * 17 16 15 19 19 C 1.38254 * 119.36319 * 0.02562 * 18 17 16 20 20 N 1.31763 * 120.89474 * 359.97438 * 19 18 17 21 21 N 1.31512 * 108.70018 * 0.22993 * 14 13 12 22 22 C 1.46497 * 120.00403 * 217.93157 * 9 7 2 23 23 C 1.52997 * 117.50013 * 14.10309 * 22 9 7 24 24 C 1.53003 * 60.00207 * 252.51212 * 23 22 9 25 25 H 0.96993 * 119.99856 * 354.96517 * 1 2 3 26 26 H 1.09000 * 109.47499 * 330.01040 * 10 9 7 27 27 H 1.09000 * 109.47417 * 210.00333 * 10 9 7 28 28 H 1.08005 * 125.84215 * 359.97438 * 12 11 10 29 29 H 1.07996 * 120.46268 * 359.73760 * 16 15 14 30 30 H 1.07993 * 120.74317 * 180.02562 * 17 16 15 31 31 H 1.07994 * 120.31997 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.55074 * 179.97438 * 19 18 17 33 33 H 1.09003 * 115.55256 * 159.80987 * 22 9 7 34 34 H 1.09006 * 117.49936 * 359.97438 * 23 22 9 35 35 H 1.09001 * 117.50485 * 145.02372 * 23 22 9 36 36 H 1.08992 * 117.49756 * 252.51157 * 24 23 22 37 37 H 1.08997 * 117.51973 * 107.47751 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0382 -1.2323 0.3296 9 7 1.3918 -2.3497 -0.4195 10 6 0.4603 -2.3091 -1.5496 11 7 1.1945 -2.5411 -2.7960 12 6 1.3519 -3.7172 -3.4307 13 7 2.0669 -3.5113 -4.5046 14 6 2.3875 -2.2134 -4.5941 15 6 3.1923 -1.5940 -5.6757 16 6 3.6810 -2.3856 -6.7130 17 6 4.4253 -1.7928 -7.7179 18 6 4.6564 -0.4258 -7.6528 19 6 4.1412 0.2991 -6.5943 20 7 3.4356 -0.2903 -5.6504 21 7 1.8753 -1.5803 -3.5614 22 6 1.6614 -3.6180 0.2623 23 6 2.3676 -3.5551 1.6181 24 6 3.1218 -4.0575 0.3853 25 1 -0.4849 0.8368 0.0737 26 1 -0.0217 -1.3323 -1.5883 27 1 -0.2968 -3.0832 -1.4245 28 1 0.9551 -4.6683 -3.1076 29 1 3.4815 -3.4468 -6.7325 30 1 4.8169 -2.3805 -8.5349 31 1 5.2330 0.0669 -8.4216 32 1 4.3195 1.3630 -6.5404 33 1 0.9118 -4.3966 0.1206 34 1 2.6320 -2.5700 2.0026 35 1 2.0826 -4.2922 2.3688 36 1 3.3329 -5.1251 0.3249 37 1 3.8819 -3.4031 -0.0414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762485523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:19 Heat of formation + Delta-G solvation = 163.115096 kcal Electronic energy + Delta-G solvation = -21836.532104 eV Core-core repulsion = 18616.969283 eV Total energy + Delta-G solvation = -3219.562821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.74598 -40.84683 -38.90447 -35.80258 -34.33193 -33.54549 -32.71657 -32.04150 -31.05879 -27.67039 -25.88891 -24.75878 -24.41830 -23.02853 -22.42980 -21.94847 -21.50477 -18.98509 -18.14231 -17.56877 -17.23585 -16.93252 -16.69878 -16.34517 -16.06239 -15.72889 -15.32505 -14.96038 -14.65861 -14.51790 -13.98008 -13.78856 -13.48262 -13.03813 -13.00896 -12.84349 -12.68885 -12.32416 -12.24615 -12.01802 -11.65850 -11.26654 -10.99126 -10.95228 -10.79667 -10.66577 -10.54026 -10.38222 -9.61663 -8.76557 -8.13688 -5.69233 -0.16814 0.37416 1.04178 1.30035 1.40391 1.43632 1.72942 2.05331 2.33813 2.82436 3.02725 3.05161 3.29106 3.36793 3.63504 3.86737 4.02310 4.06598 4.18235 4.21589 4.24362 4.38532 4.40920 4.54020 4.67631 4.86519 4.88693 4.97461 5.05486 5.14719 5.23377 5.25120 5.48043 5.48809 5.53602 5.55456 5.78779 6.12734 6.36585 6.89866 6.99313 7.29579 7.56282 8.01139 8.89020 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.005663 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.849981 B = 4942.875791 C = 6001.939008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.003 4.003 3 Si 0.945 3.055 4 H -0.297 1.297 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.041 0.959 9 N -0.544 5.544 10 C 0.353 3.647 11 N -0.367 5.367 12 C 0.247 3.753 13 N -0.555 5.555 14 C 0.215 3.785 15 C 0.177 3.823 16 C -0.134 4.134 17 C -0.070 4.070 18 C -0.152 4.152 19 C 0.081 3.919 20 N -0.512 5.512 21 N -0.313 5.313 22 C 0.098 3.902 23 C -0.182 4.182 24 C -0.208 4.208 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.259 0.741 29 H 0.151 0.849 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -8.164 -11.860 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.203 4.203 3 Si 0.774 3.226 4 H -0.224 1.224 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.398 4.398 8 H 0.059 0.941 9 N -0.260 5.260 10 C 0.146 3.854 11 N -0.164 5.164 12 C -0.050 4.050 13 N -0.284 5.284 14 C -0.066 4.066 15 C 0.039 3.961 16 C -0.156 4.156 17 C -0.096 4.096 18 C -0.172 4.172 19 C -0.077 4.077 20 N -0.223 5.223 21 N -0.144 5.144 22 C -0.009 4.009 23 C -0.220 4.220 24 C -0.249 4.249 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.275 0.725 29 H 0.169 0.831 30 H 0.200 0.800 31 H 0.199 0.801 32 H 0.193 0.807 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.399 -6.977 -11.087 13.818 hybrid contribution 0.638 0.719 0.032 0.962 sum 5.036 -6.257 -11.055 13.665 Atomic orbital electron populations 1.69830 1.06135 1.27055 1.51465 1.25567 0.95737 1.00793 0.98238 0.85641 0.78848 0.80942 0.77187 1.22407 1.20322 1.19936 1.18748 0.93765 0.86135 1.41147 0.94080 1.43956 1.49927 1.03900 1.28185 1.21834 0.87142 1.04637 0.71777 1.53029 1.37767 1.05105 1.20489 1.26720 0.95213 0.94245 0.88800 1.70257 1.20332 1.15507 1.22345 1.22298 1.00409 0.89173 0.94682 1.18359 0.96177 0.89443 0.92099 1.22192 0.97845 1.01978 0.93588 1.22051 0.94425 0.95352 0.97732 1.22685 0.99988 0.95030 0.99465 1.23264 0.92995 1.01679 0.89765 1.67483 1.14756 1.11350 1.28677 1.78443 1.13360 1.17003 1.05578 1.21670 0.93543 0.89330 0.96365 1.23060 1.05397 1.01756 0.91783 1.23247 0.97431 1.00555 1.03633 0.92968 0.88624 0.86397 0.72493 0.83101 0.80001 0.80126 0.80723 0.84846 0.91387 0.86789 0.86924 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.63 11.44 21.65 0.25 -50.39 16 2 C 0.00 -0.19 4.97 84.86 0.42 0.23 16 3 Si 0.95 47.38 29.61 68.60 2.03 49.41 16 4 H -0.30 -15.83 7.11 99.48 0.71 -15.13 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.27 -14.61 8.04 84.03 0.68 -13.94 16 8 H 0.04 2.39 7.22 -2.91 -0.02 2.37 16 9 N -0.54 -25.38 3.02 -689.67 -2.08 -27.47 16 10 C 0.35 15.45 6.69 170.96 1.14 16.59 16 11 N -0.37 -15.83 3.88 -362.22 -1.40 -17.23 16 12 C 0.25 8.57 12.64 180.37 2.28 10.85 16 13 N -0.55 -21.37 10.80 -193.09 -2.09 -23.46 16 14 C 0.21 9.50 7.86 137.45 1.08 10.58 16 15 C 0.18 6.86 6.75 41.98 0.28 7.14 16 16 C -0.13 -3.79 9.73 22.57 0.22 -3.57 16 17 C -0.07 -1.35 10.17 22.44 0.23 -1.12 16 18 C -0.15 -2.85 10.11 22.41 0.23 -2.63 16 19 C 0.08 2.24 11.17 84.71 0.95 3.18 16 20 N -0.51 -20.22 10.27 -184.83 -1.90 -22.11 16 21 N -0.31 -15.77 12.69 -52.37 -0.66 -16.44 16 22 C 0.10 3.65 6.62 44.99 0.30 3.95 16 23 C -0.18 -6.55 9.81 30.59 0.30 -6.25 16 24 C -0.21 -7.40 10.08 30.60 0.31 -7.09 16 25 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 26 H 0.10 5.04 5.51 -2.39 -0.01 5.02 16 27 H 0.12 4.08 8.03 -2.39 -0.02 4.06 16 28 H 0.26 5.69 8.06 -2.91 -0.02 5.67 16 29 H 0.15 3.95 7.83 -2.91 -0.02 3.93 16 30 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 33 H 0.13 3.92 8.10 -2.39 -0.02 3.90 16 34 H 0.07 2.93 6.96 -2.38 -0.02 2.91 16 35 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.05 2.05 7.99 -2.39 -0.02 2.04 16 Total: -1.00 -76.76 326.13 3.64 -73.12 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.09 Total: 16.64 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 8.41 Total: 17.92 kcal Atomic # 7 Polarization: -149.20 SS G_CDS: -7.89 Total: -157.09 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.76 3.64 -73.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762485523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.234 kcal (2) G-P(sol) polarization free energy of solvation -76.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds