Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47035 * 299.99632 * 3 2 1 6 6 H 1.48503 * 109.47050 * 60.00086 * 3 2 1 7 7 C 1.38976 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.37312 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.36541 * 126.06932 * 180.23964 * 9 7 2 11 11 C 1.35674 * 107.50480 * 180.13933 * 10 9 7 12 12 N 1.40556 * 126.08640 * 179.90116 * 11 10 9 13 13 C 1.38536 * 120.00386 * 179.71355 * 12 11 10 14 14 N 1.32899 * 120.44264 * 359.97438 * 13 12 11 15 15 C 1.31738 * 120.48547 * 180.02562 * 14 13 12 16 16 N 1.31609 * 121.76176 * 0.14572 * 15 14 13 17 17 C 1.33130 * 121.28339 * 359.94331 * 16 15 14 18 18 C 1.37297 * 118.93706 * 359.82733 * 17 16 15 19 19 C 1.50335 * 122.87796 * 180.60661 * 18 17 16 20 20 C 1.52822 * 110.46539 * 342.43493 * 19 18 17 21 21 C 1.52868 * 108.37017 * 50.73440 * 20 19 18 22 22 C 1.50461 * 118.46213 * 179.77031 * 17 16 15 23 23 C 1.40668 * 107.83206 * 359.63729 * 11 10 9 24 24 N 1.30914 * 108.39862 * 0.22445 * 23 11 10 25 25 H 0.97003 * 119.99778 * 0.02562 * 1 2 3 26 26 H 1.07996 * 126.24976 * 0.02562 * 10 9 7 27 27 H 0.97003 * 119.99606 * 359.71491 * 12 11 10 28 28 H 1.08009 * 119.12294 * 180.11888 * 15 14 13 29 29 H 1.09001 * 109.29802 * 102.74233 * 19 18 17 30 30 H 1.09007 * 109.30144 * 222.12614 * 19 18 17 31 31 H 1.08996 * 109.63838 * 170.45135 * 20 19 18 32 32 H 1.09000 * 109.64311 * 291.07857 * 20 19 18 33 33 H 1.09005 * 109.38772 * 170.57462 * 21 20 19 34 34 H 1.09005 * 109.64802 * 50.12511 * 21 20 19 35 35 H 1.09002 * 109.30307 * 282.62866 * 22 17 16 36 36 H 1.09001 * 109.29942 * 42.21677 * 22 17 16 37 37 H 1.08004 * 125.80143 * 180.20645 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8883 2.3963 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0078 -1.2036 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3928 0.0005 10 6 1.8750 -3.6408 0.0056 11 6 0.8579 -4.5387 0.0005 12 7 0.9889 -5.9381 0.0012 13 6 -0.1410 -6.7397 0.0015 14 7 -1.3532 -6.1948 0.0016 15 6 -2.4282 -6.9562 0.0024 16 7 -2.3468 -8.2698 0.0059 17 6 -1.1684 -8.8893 0.0077 18 6 -0.0212 -8.1350 0.0023 19 6 1.3543 -8.7416 -0.0096 20 6 1.2954 -10.2077 0.4178 21 6 0.2226 -10.9095 -0.4148 22 6 -1.1493 -10.3938 0.0171 23 6 -0.3512 -3.8198 0.0005 24 7 -0.0716 -2.5409 0.0006 25 1 -0.4850 0.8401 -0.0004 26 1 2.9301 -3.8712 0.0108 27 1 1.8706 -6.3426 0.0015 28 1 -3.4025 -6.4901 0.0005 29 1 1.7683 -8.6758 -1.0157 30 1 1.9967 -8.1912 0.6779 31 1 2.2627 -10.6791 0.2437 32 1 1.0386 -10.2710 1.4752 33 1 0.2795 -11.9849 -0.2458 34 1 0.3791 -10.6932 -1.4717 35 1 -1.3679 -10.7507 1.0235 36 1 -1.9078 -10.7680 -0.6706 37 1 -1.3419 -4.2499 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763346071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = 126.779671 kcal Electronic energy + Delta-G solvation = -21614.546724 eV Core-core repulsion = 18393.408280 eV Total energy + Delta-G solvation = -3221.138444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98026 -39.43437 -37.00325 -35.98680 -33.44975 -32.13315 -31.13443 -30.12827 -29.70494 -27.41305 -24.96165 -24.47871 -23.46575 -22.14078 -20.58978 -20.14166 -19.52086 -17.88588 -17.40615 -16.34667 -15.56266 -15.46268 -14.99083 -14.66079 -14.48924 -14.08371 -14.02262 -13.66298 -13.42305 -13.28273 -12.92486 -12.61056 -12.21516 -11.71158 -11.68752 -11.46110 -11.24697 -11.22182 -10.93000 -10.90175 -10.80852 -10.51569 -10.03380 -9.59084 -9.26500 -8.82130 -8.51514 -8.47801 -8.02566 -6.56576 -6.51631 -4.21283 1.39578 1.70602 2.95147 3.04317 3.10261 3.49039 3.57937 3.85569 4.18418 4.32272 4.48837 4.55568 4.66537 4.75313 4.78529 4.96025 5.01539 5.06521 5.34726 5.42052 5.48787 5.56177 5.65233 5.73720 5.82915 5.89394 6.02626 6.15862 6.22424 6.25789 6.39376 6.71483 6.90363 6.97642 7.19257 7.32926 7.72698 7.91404 8.11861 8.31206 8.68849 8.79675 9.37658 9.67880 10.39421 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.003567 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.955880 B = 7848.603799 C = 8507.156443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.087 4.087 11 C -0.058 4.058 12 N -0.596 5.596 13 C 0.440 3.560 14 N -0.564 5.564 15 C 0.333 3.667 16 N -0.582 5.582 17 C 0.199 3.801 18 C -0.257 4.257 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.067 4.067 23 C -0.030 4.030 24 N -0.262 5.262 25 H 0.274 0.726 26 H 0.143 0.857 27 H 0.408 0.592 28 H 0.190 0.810 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -16.463 0.003 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.238 4.238 11 C -0.164 4.164 12 N -0.216 5.216 13 C 0.193 3.807 14 N -0.289 5.289 15 C 0.042 3.958 16 N -0.303 5.303 17 C 0.060 3.940 18 C -0.268 4.268 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.105 4.105 23 C -0.206 4.206 24 N -0.092 5.092 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.245 0.755 28 H 0.206 0.794 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.878 -14.469 0.001 14.496 hybrid contribution 1.941 -0.465 0.015 1.996 sum 2.818 -14.934 0.016 15.197 Atomic orbital electron populations 1.70230 1.06091 1.27827 1.35452 1.25632 0.95716 1.00229 0.95522 0.85769 0.79626 0.80302 0.78478 1.18729 1.19909 1.19915 1.19908 0.91667 0.80592 1.53320 0.86677 1.44562 1.04107 1.03186 1.39232 1.21202 0.96739 0.85481 1.20383 1.17318 0.94579 0.80780 1.23759 1.41174 1.04722 1.03607 1.72102 1.18425 0.87162 0.86841 0.88299 1.68169 0.97776 1.39719 1.23206 1.24601 0.96893 0.85805 0.88456 1.68324 1.27550 1.12177 1.22261 1.20764 0.87398 0.96105 0.89783 1.20155 0.97487 0.92523 1.16644 1.20113 0.92733 0.95822 1.01551 1.21453 0.99039 0.94781 1.00155 1.21493 0.94029 0.99743 1.00356 1.20316 0.98210 0.88999 1.02942 1.24452 0.98582 0.90400 1.07209 1.78259 0.90034 1.15229 1.25689 0.91544 0.83910 0.75517 0.79393 0.91078 0.91431 0.91318 0.91567 0.91128 0.91471 0.89799 0.89657 0.79547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.40 11.81 55.49 0.66 -20.74 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 18.92 29.55 -169.99 -5.02 13.89 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.32 -8.55 10.25 -14.82 -0.15 -8.70 16 8 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 9 N -0.14 -3.94 3.74 -11.40 -0.04 -3.98 16 10 C -0.09 -2.05 11.50 -16.37 -0.19 -2.24 16 11 C -0.06 -1.34 6.92 -83.85 -0.58 -1.92 16 12 N -0.60 -10.91 5.50 -9.90 -0.05 -10.96 16 13 C 0.44 7.90 7.46 -154.70 -1.15 6.75 16 14 N -0.56 -10.74 6.64 -13.77 -0.09 -10.83 16 15 C 0.33 5.45 12.28 -92.36 -1.13 4.32 16 16 N -0.58 -9.22 10.31 -11.07 -0.11 -9.33 16 17 C 0.20 2.86 6.62 -82.49 -0.55 2.31 16 18 C -0.26 -3.79 5.75 -104.46 -0.60 -4.39 16 19 C -0.06 -0.70 4.95 -28.15 -0.14 -0.84 16 20 C -0.12 -1.02 5.97 -26.89 -0.16 -1.18 16 21 C -0.12 -0.99 5.93 -26.90 -0.16 -1.15 16 22 C -0.07 -0.70 5.97 -28.10 -0.17 -0.86 16 23 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 24 N -0.26 -7.52 10.40 30.81 0.32 -7.20 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.41 6.08 7.02 -40.82 -0.29 5.80 16 28 H 0.19 2.49 8.06 -52.48 -0.42 2.07 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.71 7.13 -51.92 -0.37 0.34 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.19 4.54 5.61 -52.48 -0.29 4.25 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -32.52 308.14 -9.27 -41.78 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.30 Total: 10.49 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -5.26 Total: -7.76 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.67 Total: -63.06 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.52 -9.27 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763346071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.564 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds