Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41595 * 114.00101 * 2 1 4 4 C 1.29455 * 119.99722 * 179.97438 * 3 2 1 5 5 C 1.47416 * 119.99631 * 179.97438 * 4 3 2 6 6 C 1.36786 * 126.69472 * 185.51631 * 5 4 3 7 7 N 1.34481 * 108.05623 * 179.97438 * 6 5 4 8 8 C 1.46497 * 125.23555 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47269 * 125.00148 * 8 7 6 10 10 H 1.07996 * 119.99665 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00150 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99947 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00152 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47089 * 59.99681 * 13 11 9 15 15 H 1.48494 * 109.47385 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46981 * 300.00052 * 13 11 9 17 17 N 1.39813 * 109.52198 * 0.02562 * 7 6 5 18 18 C 1.31486 * 108.83097 * 359.72603 * 17 7 6 19 19 C 1.48282 * 126.50623 * 180.25613 * 18 17 7 20 20 C 1.39384 * 120.12543 * 44.89313 * 19 18 17 21 21 C 1.38014 * 119.87028 * 179.69339 * 20 19 18 22 22 C 1.38323 * 120.12330 * 0.58092 * 21 20 19 23 23 C 1.38326 * 120.25812 * 359.71511 * 22 21 20 24 24 C 1.38010 * 120.12590 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.46779 * 60.00226 * 1 2 3 26 26 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47236 * 300.00188 * 1 2 3 28 28 H 1.07993 * 119.99917 * 0.27992 * 4 3 2 29 29 H 1.07994 * 125.97276 * 359.94884 * 6 5 4 30 30 H 1.09004 * 109.46696 * 245.00355 * 8 7 6 31 31 H 1.08998 * 109.47423 * 4.99715 * 8 7 6 32 32 H 0.97001 * 119.99963 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.06575 * 359.97258 * 20 19 18 34 34 H 1.08000 * 119.93319 * 180.31594 * 21 20 19 35 35 H 1.08008 * 119.86819 * 179.74411 * 22 21 20 36 36 H 1.07997 * 119.93529 * 180.02562 * 23 22 21 37 37 H 1.07993 * 120.06145 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.2924 1.4288 0.0005 5 6 3.8920 2.7755 -0.0001 6 6 5.2219 3.0781 -0.1051 7 7 5.3493 4.4162 -0.0651 8 6 6.6159 5.1475 -0.1488 9 6 6.5450 6.1481 -1.2734 10 1 5.6464 6.2307 -1.8668 11 6 7.6272 6.9581 -1.5448 12 7 8.7212 6.8579 -0.8219 13 14 7.5391 8.1988 -2.9384 14 1 6.4315 9.1541 -2.6813 15 1 8.8230 8.9400 -3.0233 16 1 7.2927 7.4883 -4.2189 17 7 4.0868 5.0020 0.0685 18 6 3.1796 4.0510 0.1061 19 6 1.7138 4.2348 0.2348 20 6 1.0604 5.2017 -0.5274 21 6 -0.3049 5.3640 -0.4081 22 6 -1.0230 4.5774 0.4745 23 6 -0.3790 3.6204 1.2379 24 6 0.9850 3.4449 1.1224 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9271 0.5550 -0.0036 29 1 6.0285 2.3667 -0.2026 30 1 6.7968 5.6693 0.7910 31 1 7.4287 4.4461 -0.3371 32 1 9.4828 7.4275 -1.0130 33 1 1.6208 5.8198 -1.2132 34 1 -0.8130 6.1095 -1.0018 35 1 -2.0908 4.7107 0.5676 36 1 -0.9448 3.0088 1.9251 37 1 1.4867 2.6971 1.7186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767477783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = 113.232817 kcal Electronic energy + Delta-G solvation = -21334.732956 eV Core-core repulsion = 18080.714326 eV Total energy + Delta-G solvation = -3254.018631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45984 -38.56678 -37.15489 -34.33009 -33.35471 -32.23831 -30.65400 -30.24603 -29.47743 -27.12298 -26.05806 -23.70895 -22.85323 -22.28150 -21.37128 -19.89651 -19.03356 -17.04738 -16.74181 -16.59517 -15.87194 -15.16911 -15.02532 -14.89917 -14.67988 -14.34809 -14.05301 -13.53899 -13.20642 -13.09756 -12.78481 -12.45400 -12.26762 -12.10766 -11.98709 -11.63599 -11.09322 -11.01226 -10.92944 -10.79031 -10.35961 -10.26983 -9.90698 -9.72846 -9.53484 -9.08460 -8.69023 -8.58906 -8.20669 -7.50659 -6.32901 -4.38785 1.35872 1.69191 1.84046 2.76993 2.95352 3.21692 3.25397 3.28357 3.37148 3.52335 4.14798 4.25373 4.74557 5.01844 5.08389 5.15330 5.19639 5.27179 5.34689 5.44545 5.45123 5.60377 5.68241 5.74510 5.80900 6.00374 6.02211 6.16677 6.30411 6.51938 6.62741 6.71045 6.73242 6.90001 6.91112 7.11750 7.24342 7.55379 7.73873 7.74968 7.87368 8.36121 8.68305 9.27668 10.75925 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004332 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.211139 B = 6461.958079 C = 7452.443992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.262 6.262 3 N -0.351 5.351 4 C 0.202 3.798 5 C -0.239 4.239 6 C 0.101 3.899 7 N -0.317 5.317 8 C 0.253 3.747 9 C -0.533 4.533 10 H 0.069 0.931 11 C 0.065 3.935 12 N -0.894 5.894 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.257 5.257 18 C 0.115 3.885 19 C 0.005 3.995 20 C -0.092 4.092 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.057 4.057 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.179 0.821 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -9.784 2.814 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.273 6.273 3 N -0.101 5.101 4 C -0.006 4.006 5 C -0.254 4.254 6 C -0.053 4.053 7 N -0.094 5.094 8 C 0.136 3.864 9 C -0.572 4.572 10 H 0.088 0.912 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.735 3.265 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.200 1.200 17 N -0.078 5.078 18 C -0.054 4.054 19 C 0.003 3.997 20 C -0.111 4.111 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.076 4.076 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.196 0.804 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.114 -8.152 2.860 16.548 hybrid contribution 0.563 -0.758 -0.829 1.257 sum -13.551 -8.911 2.032 16.345 Atomic orbital electron populations 1.22538 0.79553 1.01413 1.00897 1.89730 1.21384 1.22057 1.94178 1.77117 1.13212 1.01597 1.18189 1.23321 0.91624 0.94907 0.90787 1.19084 0.91449 0.90268 1.24564 1.22509 0.96834 0.87445 0.98549 1.49288 1.07528 1.03607 1.49026 1.19891 0.74394 0.92547 0.99606 1.21165 1.01034 1.19569 1.15390 0.91241 1.24922 0.94797 0.97143 0.96971 1.69897 1.04114 1.39690 1.39453 0.86372 0.77509 0.80872 0.81717 1.19807 1.20972 1.19973 1.77541 0.88392 1.20767 1.21089 1.21882 0.92665 0.89962 1.00863 1.17660 0.88131 0.96607 0.97265 1.21253 0.94370 0.96828 0.98682 1.20969 0.93930 1.00265 0.99661 1.21092 0.99402 0.96456 0.96847 1.20912 0.94345 0.99204 1.00553 1.20979 0.93523 0.96649 0.96492 0.93653 0.89603 0.93605 0.86682 0.80388 0.93214 0.92288 0.92132 0.85831 0.86285 0.86633 0.86563 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 11.47 101.05 1.16 1.74 16 2 O -0.26 -3.85 11.72 -11.47 -0.13 -3.98 16 3 N -0.35 -5.53 7.45 32.10 0.24 -5.29 16 4 C 0.20 3.06 11.04 -14.82 -0.16 2.89 16 5 C -0.24 -4.13 6.23 -103.36 -0.64 -4.78 16 6 C 0.10 1.74 11.34 -16.92 -0.19 1.55 16 7 N -0.32 -6.76 3.63 -62.28 -0.23 -6.99 16 8 C 0.25 5.99 6.22 -5.20 -0.03 5.96 16 9 C -0.53 -14.19 9.21 -34.44 -0.32 -14.50 16 10 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.43 13.29 55.43 0.74 -23.70 16 13 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 N -0.26 -5.70 12.33 34.57 0.43 -5.27 16 18 C 0.11 2.22 6.86 -80.56 -0.55 1.67 16 19 C 0.01 0.09 5.47 -104.91 -0.57 -0.48 16 20 C -0.09 -1.50 9.78 -39.24 -0.38 -1.88 16 21 C -0.13 -1.74 10.03 -39.63 -0.40 -2.14 16 22 C -0.12 -1.45 10.04 -39.52 -0.40 -1.85 16 23 C -0.13 -1.68 10.03 -39.63 -0.40 -2.08 16 24 C -0.06 -0.86 7.55 -39.24 -0.30 -1.16 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.18 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.85 6.98 -52.49 -0.37 1.48 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -30.06 332.06 -6.82 -36.88 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.56 Total: 0.98 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.29 Total: -13.43 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 1.18 Total: -41.25 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.13 Total: -3.98 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.06 -6.82 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767477783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.115 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds