Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41595 * 114.00101 * 2 1 4 4 C 1.29455 * 119.99722 * 179.97438 * 3 2 1 5 5 C 1.47416 * 119.99631 * 179.97438 * 4 3 2 6 6 C 1.36786 * 126.69472 * 185.51631 * 5 4 3 7 7 N 1.34481 * 108.05623 * 179.97438 * 6 5 4 8 8 C 1.46497 * 125.23555 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47269 * 125.00148 * 8 7 6 10 10 H 1.07996 * 119.99665 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00150 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99947 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00152 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47089 * 59.99681 * 13 11 9 15 15 H 1.48494 * 109.47385 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46981 * 300.00052 * 13 11 9 17 17 N 1.39813 * 109.52198 * 0.02562 * 7 6 5 18 18 C 1.31486 * 108.83097 * 359.72603 * 17 7 6 19 19 C 1.48282 * 126.50623 * 180.25613 * 18 17 7 20 20 C 1.39384 * 120.12543 * 44.89313 * 19 18 17 21 21 C 1.38014 * 119.87028 * 179.69339 * 20 19 18 22 22 C 1.38323 * 120.12330 * 0.58092 * 21 20 19 23 23 C 1.38326 * 120.25812 * 359.71511 * 22 21 20 24 24 C 1.38010 * 120.12590 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.46779 * 60.00226 * 1 2 3 26 26 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47236 * 300.00188 * 1 2 3 28 28 H 1.07993 * 119.99917 * 0.27992 * 4 3 2 29 29 H 1.07994 * 125.97276 * 359.94884 * 6 5 4 30 30 H 1.09004 * 109.46696 * 245.00355 * 8 7 6 31 31 H 1.08998 * 109.47423 * 4.99715 * 8 7 6 32 32 H 0.97001 * 119.99963 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.06575 * 359.97258 * 20 19 18 34 34 H 1.08000 * 119.93319 * 180.31594 * 21 20 19 35 35 H 1.08008 * 119.86819 * 179.74411 * 22 21 20 36 36 H 1.07997 * 119.93529 * 180.02562 * 23 22 21 37 37 H 1.07993 * 120.06145 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.2924 1.4288 0.0005 5 6 3.8920 2.7755 -0.0001 6 6 5.2219 3.0781 -0.1051 7 7 5.3493 4.4162 -0.0651 8 6 6.6159 5.1475 -0.1488 9 6 6.5450 6.1481 -1.2734 10 1 5.6464 6.2307 -1.8668 11 6 7.6272 6.9581 -1.5448 12 7 8.7212 6.8579 -0.8219 13 14 7.5391 8.1988 -2.9384 14 1 6.4315 9.1541 -2.6813 15 1 8.8230 8.9400 -3.0233 16 1 7.2927 7.4883 -4.2189 17 7 4.0868 5.0020 0.0685 18 6 3.1796 4.0510 0.1061 19 6 1.7138 4.2348 0.2348 20 6 1.0604 5.2017 -0.5274 21 6 -0.3049 5.3640 -0.4081 22 6 -1.0230 4.5774 0.4745 23 6 -0.3790 3.6204 1.2379 24 6 0.9850 3.4449 1.1224 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9271 0.5550 -0.0036 29 1 6.0285 2.3667 -0.2026 30 1 6.7968 5.6693 0.7910 31 1 7.4287 4.4461 -0.3371 32 1 9.4828 7.4275 -1.0130 33 1 1.6208 5.8198 -1.2132 34 1 -0.8130 6.1095 -1.0018 35 1 -2.0908 4.7107 0.5676 36 1 -0.9448 3.0088 1.9251 37 1 1.4867 2.6971 1.7186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767477783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = 96.630518 kcal Electronic energy + Delta-G solvation = -21335.452886 eV Core-core repulsion = 18080.714326 eV Total energy + Delta-G solvation = -3254.738560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -41.90651 -39.70474 -38.25397 -35.90385 -34.89159 -33.73332 -31.75893 -31.71262 -30.82260 -28.73348 -27.13888 -25.35884 -24.17693 -23.41100 -22.73316 -21.24487 -20.38419 -18.66368 -18.26087 -17.82149 -17.26583 -16.46717 -16.34826 -16.11838 -15.93680 -15.72370 -15.47213 -14.79864 -14.54264 -14.32363 -14.22026 -13.87129 -13.69234 -13.44238 -13.09498 -12.97060 -12.81897 -12.70721 -12.30150 -12.11824 -11.95682 -11.88147 -11.49594 -10.92863 -10.78841 -10.73284 -10.48467 -9.70919 -9.47731 -8.89831 -8.34951 -6.48720 0.18114 0.54282 0.62352 1.35463 1.38088 1.40064 1.47609 1.67533 2.03299 2.24813 2.33759 2.97454 3.00692 3.49753 3.77413 4.05767 4.12811 4.19083 4.29860 4.36651 4.57713 4.60560 4.64753 4.69413 4.72408 4.74601 4.88821 4.92274 4.99245 5.07724 5.21982 5.39739 5.50884 5.54489 5.65488 5.72081 5.73887 5.84303 6.13399 6.15356 6.60228 6.73041 6.89727 7.21178 8.72216 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004332 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.211139 B = 6461.958079 C = 7452.443992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.271 6.271 3 N -0.361 5.361 4 C 0.199 3.801 5 C -0.239 4.239 6 C 0.107 3.893 7 N -0.343 5.343 8 C 0.268 3.732 9 C -0.550 4.550 10 H 0.050 0.950 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.966 3.034 14 H -0.276 1.276 15 H -0.272 1.272 16 H -0.269 1.269 17 N -0.312 5.312 18 C 0.112 3.888 19 C -0.025 4.025 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.062 4.062 25 H 0.040 0.960 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.148 0.852 29 H 0.221 0.779 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.273 0.727 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 -11.251 2.725 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.284 6.284 3 N -0.110 5.110 4 C -0.010 4.010 5 C -0.253 4.253 6 C -0.045 4.045 7 N -0.121 5.121 8 C 0.149 3.851 9 C -0.588 4.588 10 H 0.069 0.931 11 C -0.178 4.178 12 N -0.556 5.556 13 Si 0.790 3.210 14 H -0.202 1.202 15 H -0.197 1.197 16 H -0.194 1.194 17 N -0.132 5.132 18 C -0.056 4.056 19 C -0.027 4.027 20 C -0.135 4.135 21 C -0.147 4.147 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.238 0.762 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.324 -9.632 2.775 19.155 hybrid contribution 1.021 -0.403 -0.754 1.332 sum -15.302 -10.034 2.021 18.410 Atomic orbital electron populations 1.22819 0.77704 1.03519 1.00973 1.89717 1.23366 1.21173 1.94094 1.77056 1.13747 1.02816 1.17418 1.23339 0.92134 0.94545 0.90988 1.19350 0.91365 0.90846 1.23770 1.23198 0.98193 0.86380 0.96725 1.48982 1.06619 1.04861 1.51616 1.19446 0.75989 0.92314 0.97325 1.21337 1.00455 1.20850 1.16176 0.93142 1.25650 0.94434 0.98612 0.99072 1.69966 1.04584 1.40481 1.40590 0.85482 0.77684 0.78673 0.79121 1.20175 1.19696 1.19409 1.77449 0.89230 1.22769 1.23785 1.22466 0.93582 0.90515 0.99084 1.17834 0.87283 0.98357 0.99230 1.21263 0.95890 0.97119 0.99242 1.21273 0.92667 1.00799 0.99978 1.21538 1.01204 0.94842 0.95019 1.21296 0.93334 0.99240 1.00535 1.20990 0.94654 0.96347 0.96142 0.94140 0.86507 0.92887 0.83539 0.76247 0.95814 0.91476 0.91775 0.87953 0.83908 0.82715 0.83350 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 11.47 113.37 1.30 2.19 16 2 O -0.27 -7.33 11.72 -38.77 -0.45 -7.78 16 3 N -0.36 -10.87 7.45 -52.37 -0.39 -11.26 16 4 C 0.20 5.75 11.04 87.46 0.97 6.72 16 5 C -0.24 -8.30 6.23 -19.05 -0.12 -8.41 16 6 C 0.11 3.70 11.34 83.95 0.95 4.65 16 7 N -0.34 -15.23 3.63 -350.95 -1.27 -16.51 16 8 C 0.27 13.26 6.22 85.63 0.53 13.79 16 9 C -0.55 -30.39 9.21 25.60 0.24 -30.15 16 10 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.02 1.26 5.46 84.66 0.46 1.72 16 12 N -0.92 -50.96 13.29 21.45 0.28 -50.67 16 13 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 N -0.31 -14.62 12.33 -44.55 -0.55 -15.17 16 18 C 0.11 4.52 6.86 44.02 0.30 4.82 16 19 C -0.03 -0.88 5.47 -20.05 -0.11 -0.99 16 20 C -0.12 -3.85 9.78 22.49 0.22 -3.63 16 21 C -0.13 -3.25 10.03 22.24 0.22 -3.03 16 22 C -0.11 -2.25 10.04 22.31 0.22 -2.02 16 23 C -0.13 -2.84 10.03 22.24 0.22 -2.62 16 24 C -0.06 -1.82 7.55 22.49 0.17 -1.65 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.22 5.32 8.06 -2.91 -0.02 5.30 16 30 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 3.16 8.05 -2.39 -0.02 3.14 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.10 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.11 3.44 6.98 -2.91 -0.02 3.42 16 Total: -1.00 -67.86 332.06 6.29 -61.56 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.07 Total: 13.19 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.58 Total: -18.62 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.93 Total: -93.61 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.45 Total: -7.78 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.86 6.29 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767477783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.194 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.01 seconds