Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47289 * 2 1 4 4 C 1.50696 * 109.53743 * 299.99799 * 3 2 1 5 5 O 1.20833 * 119.99655 * 239.99395 * 4 3 2 6 6 O 1.34231 * 120.00640 * 60.27666 * 4 3 2 7 7 C 1.45193 * 117.00126 * 179.71955 * 6 4 3 8 8 C 1.50706 * 109.46845 * 180.02562 * 7 6 4 9 9 O 1.21293 * 119.99979 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00037 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99819 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99865 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99998 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47058 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47748 * 119.99873 * 15 13 11 18 18 H 1.48505 * 109.47262 * 239.99721 * 15 13 11 19 19 C 1.53178 * 109.53954 * 60.17126 * 3 2 1 20 20 C 1.53285 * 109.05725 * 176.85249 * 19 3 2 21 21 O 1.42906 * 109.46356 * 302.44660 * 20 19 3 22 22 C 1.42895 * 114.09508 * 61.16120 * 21 20 19 23 23 C 1.53097 * 109.41740 * 298.83924 * 22 21 20 24 24 H 1.08996 * 109.47298 * 300.00298 * 1 2 3 25 25 H 1.09006 * 109.46519 * 60.00607 * 1 2 3 26 26 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47298 * 239.99702 * 2 1 3 28 28 H 1.09001 * 109.46966 * 119.99953 * 2 1 3 29 29 H 1.08997 * 109.47488 * 299.99586 * 7 6 4 30 30 H 1.08997 * 109.47515 * 60.00401 * 7 6 4 31 31 H 0.97003 * 119.99738 * 359.97438 * 10 8 7 32 32 H 0.97007 * 119.99888 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.52445 * 296.84218 * 19 3 2 34 34 H 1.08998 * 109.52357 * 57.04010 * 19 3 2 35 35 H 1.09007 * 109.45634 * 182.44623 * 20 19 3 36 36 H 1.09004 * 109.46732 * 62.45278 * 20 19 3 37 37 H 1.09005 * 109.48205 * 178.85995 * 22 21 20 38 38 H 1.09000 * 109.49446 * 58.83106 * 22 21 20 39 39 H 1.08998 * 109.52196 * 297.70754 * 23 22 21 40 40 H 1.08993 * 109.57773 * 177.55009 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5386 2.1544 -1.2299 5 8 2.3245 2.6139 -2.0245 6 8 0.2191 2.2829 -1.4401 7 6 -0.1915 2.9857 -2.6424 8 6 -1.6965 3.0316 -2.7081 9 8 -2.3577 2.5218 -1.8283 10 7 -2.3075 3.6383 -3.7449 11 6 -3.6766 3.6797 -3.8049 12 1 -4.2654 3.2265 -3.0211 13 6 -4.3065 4.3047 -4.8741 14 7 -3.5900 4.8566 -5.8275 15 14 -6.1718 4.3617 -4.9555 16 1 -6.7404 3.6737 -3.7686 17 1 -6.6237 5.7762 -4.9720 18 1 -6.6345 3.6800 -6.1911 19 6 1.5339 2.1649 1.2523 20 6 2.1149 3.5830 1.2813 21 8 3.5420 3.5136 1.2526 22 6 4.0723 2.8892 0.0818 23 6 3.5718 1.4444 0.0045 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.2020 4.0019 -2.6217 30 1 0.1949 2.4641 -3.5180 31 1 -1.7786 4.0457 -4.4486 32 1 -4.0299 5.2926 -6.5741 33 1 0.4454 2.2154 1.2288 34 1 1.8553 1.6218 2.1410 35 1 1.7938 4.0885 2.1922 36 1 1.7605 4.1387 0.4131 37 1 5.1613 2.8946 0.1284 38 1 3.7437 3.4355 -0.8023 39 1 3.9342 0.8867 0.8681 40 1 3.9394 0.9790 -0.9100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778883760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -198.406201 kcal Electronic energy + Delta-G solvation = -23681.101106 eV Core-core repulsion = 20073.967123 eV Total energy + Delta-G solvation = -3607.133983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42968 -40.40335 -39.57598 -37.54846 -36.73425 -36.03209 -33.42231 -32.21200 -31.68462 -30.15989 -27.07686 -26.46782 -24.78123 -23.97366 -22.64402 -21.44870 -20.78150 -20.08763 -18.43814 -18.18301 -17.74022 -17.27129 -17.01220 -16.85969 -16.42063 -15.93395 -15.78712 -15.62237 -15.08455 -14.91888 -14.57445 -14.33386 -13.93311 -13.82347 -13.58158 -13.31998 -13.29394 -12.96883 -12.92579 -12.47608 -12.40058 -12.22913 -12.11753 -12.06936 -11.70541 -11.64290 -11.56743 -11.35811 -11.11373 -10.50983 -10.47399 -10.12683 -8.53616 -6.04194 1.03943 1.33713 1.34044 1.44349 1.58115 1.85742 2.28504 2.88566 2.99081 3.11928 3.37838 3.53282 3.59482 3.78869 3.94204 4.04392 4.10572 4.18138 4.19570 4.37139 4.43817 4.44598 4.55990 4.66232 4.75075 4.82483 4.90912 4.99255 5.00824 5.02066 5.11107 5.23246 5.35458 5.38447 5.64370 5.87934 6.16561 6.44081 6.61249 7.01860 7.38725 7.91710 8.63778 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.003758 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.559979 B = 7449.566416 C = 7726.285734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.049 4.049 4 C 0.461 3.539 5 O -0.528 6.528 6 O -0.325 6.325 7 C 0.064 3.936 8 C 0.439 3.561 9 O -0.611 6.611 10 N -0.560 5.560 11 C -0.336 4.336 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.917 5.917 15 Si 0.998 3.002 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.142 4.142 20 C 0.052 3.948 21 O -0.391 6.391 22 C 0.043 3.957 23 C -0.128 4.128 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.398 0.602 32 H 0.280 0.720 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.023 0.977 37 H 0.115 0.885 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -6.642 11.222 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.139 4.139 3 C -0.050 4.050 4 C 0.306 3.694 5 O -0.417 6.417 6 O -0.240 6.240 7 C -0.013 4.013 8 C 0.226 3.774 9 O -0.497 6.497 10 N -0.198 5.198 11 C -0.465 4.465 12 H 0.103 0.897 13 C -0.210 4.210 14 N -0.557 5.557 15 Si 0.821 3.179 16 H -0.195 1.195 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.179 4.179 20 C -0.024 4.024 21 O -0.310 6.310 22 C -0.034 4.034 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.041 0.959 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.784 -6.654 11.513 19.152 hybrid contribution -0.881 0.550 -1.347 1.701 sum 12.903 -6.103 10.165 17.523 Atomic orbital electron populations 1.22067 0.95451 1.01990 1.02980 1.21585 0.96069 0.91643 1.04615 1.20945 0.97448 0.97067 0.89558 1.24561 0.79978 0.76792 0.88097 1.90590 1.56768 1.46960 1.47423 1.86718 1.26005 1.68595 1.42680 1.22515 0.92647 0.98758 0.87427 1.20021 0.89195 0.84076 0.84120 1.90526 1.67219 1.51231 1.40704 1.41764 1.07272 1.49601 1.21133 1.19759 0.82010 1.36249 1.08477 0.89668 1.26122 1.05299 0.95224 0.94321 1.69684 1.38206 1.36516 1.11316 0.84803 0.76229 0.78427 0.78468 1.19469 1.19498 1.19484 1.22406 1.02164 0.96373 0.96984 1.22745 0.80992 0.96281 1.02423 1.87893 1.20388 1.80251 1.42465 1.22922 1.00151 0.92545 0.87734 1.22163 0.90617 0.98543 1.05162 0.92069 0.93202 0.91757 0.91202 0.87049 0.88336 0.88065 0.76747 0.91007 0.89744 0.86615 0.86368 0.95876 0.86688 0.93530 0.86848 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 9.05 71.98 0.65 -3.51 16 2 C -0.10 -1.91 4.99 30.60 0.15 -1.76 16 3 C -0.05 -1.07 0.52 -52.81 -0.03 -1.10 16 4 C 0.46 14.02 5.15 71.23 0.37 14.38 16 5 O -0.53 -17.59 13.60 21.94 0.30 -17.29 16 6 O -0.33 -11.65 6.55 -45.07 -0.30 -11.95 16 7 C 0.06 2.42 5.94 71.24 0.42 2.84 16 8 C 0.44 21.26 7.86 87.66 0.69 21.95 16 9 O -0.61 -33.86 16.08 15.73 0.25 -33.61 16 10 N -0.56 -28.72 5.29 -306.98 -1.62 -30.34 16 11 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 12 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 13 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 14 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 15 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 C -0.14 -2.87 4.45 30.75 0.14 -2.73 16 20 C 0.05 1.18 6.62 72.08 0.48 1.66 16 21 O -0.39 -9.23 10.77 -148.98 -1.60 -10.84 16 22 C 0.04 0.92 6.55 72.01 0.47 1.39 16 23 C -0.13 -2.30 4.56 30.69 0.14 -2.16 16 24 H 0.06 1.48 6.51 -2.39 -0.02 1.46 16 25 H 0.05 1.65 5.34 -2.38 -0.01 1.63 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 3.44 8.13 -2.39 -0.02 3.42 16 30 H 0.10 3.50 8.13 -2.39 -0.02 3.48 16 31 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 32 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 33 H 0.08 1.94 6.53 -2.39 -0.02 1.93 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.02 0.63 7.38 -2.39 -0.02 0.61 16 37 H 0.12 1.92 8.14 -2.38 -0.02 1.91 16 38 H 0.05 1.25 5.82 -2.39 -0.01 1.24 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.52 8.03 -2.39 -0.02 1.50 16 Total: -1.00 -67.73 323.32 4.43 -63.30 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.33 Total: 32.30 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 4.76 Total: 12.98 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.34 Total: -78.84 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -1.35 Total: -73.68 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -67.73 4.43 -63.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778883760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.109 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds