Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46966 * 2 1 4 4 H 1.08996 * 109.48357 * 305.02025 * 3 2 1 5 5 C 1.53093 * 109.47785 * 184.99625 * 3 2 1 6 6 C 1.53180 * 109.16555 * 182.40779 * 5 3 2 7 7 H 1.09002 * 109.54366 * 297.02694 * 6 5 3 8 8 C 1.50700 * 109.54654 * 176.84876 * 6 5 3 9 9 O 1.20829 * 119.99926 * 0.17685 * 8 6 5 10 10 O 1.34231 * 120.00009 * 180.18078 * 8 6 5 11 11 C 1.45194 * 116.99971 * 180.02562 * 10 8 6 12 12 C 1.50695 * 109.47399 * 179.97438 * 11 10 8 13 13 O 1.21297 * 119.99943 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00454 * 179.97438 * 12 11 10 15 15 C 1.37099 * 120.00130 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00049 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99753 * 180.02562 * 15 14 12 18 18 N 1.31406 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99709 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99702 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99882 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99875 * 19 17 15 23 23 C 1.53174 * 109.10754 * 56.93696 * 6 5 3 24 24 C 1.53114 * 109.15941 * 303.15323 * 23 6 5 25 25 O 1.42899 * 109.48344 * 65.05648 * 3 2 1 26 26 H 1.08999 * 109.47378 * 300.00327 * 1 2 3 27 27 H 1.09006 * 109.46650 * 60.00340 * 1 2 3 28 28 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46861 * 239.99662 * 2 1 3 30 30 H 1.09006 * 109.46650 * 119.99660 * 2 1 3 31 31 H 1.09001 * 109.52473 * 62.50106 * 5 3 2 32 32 H 1.09001 * 109.57501 * 302.34564 * 5 3 2 33 33 H 1.08998 * 109.47719 * 59.99350 * 11 10 8 34 34 H 1.09007 * 109.46752 * 299.99828 * 11 10 8 35 35 H 0.97006 * 119.99547 * 0.02562 * 14 12 11 36 36 H 0.97001 * 120.00308 * 0.02562 * 18 17 15 37 37 H 1.08994 * 109.52847 * 62.97176 * 23 6 5 38 38 H 1.09000 * 109.52301 * 183.16547 * 23 6 5 39 39 H 1.09007 * 109.40395 * 297.49606 * 24 23 6 40 40 H 1.08998 * 109.49147 * 177.50868 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4445 -0.1257 6 6 4.0735 2.8884 -0.0645 7 1 3.6806 3.4494 -0.9125 8 6 5.5798 2.8956 -0.1097 9 8 6.1868 1.8537 -0.1865 10 8 6.2471 4.0594 -0.0644 11 6 7.6966 3.9905 -0.1128 12 6 8.2681 5.3835 -0.0523 13 8 7.5266 6.3404 0.0245 14 7 9.6031 5.5662 -0.0825 15 6 10.1230 6.8336 -0.0269 16 1 9.4628 7.6856 0.0406 17 6 11.4993 7.0219 -0.0586 18 7 12.3025 5.9852 -0.1413 19 14 12.2076 8.7487 0.0163 20 1 12.3525 9.2846 -1.3611 21 1 13.5381 8.7099 0.6748 22 1 11.2954 9.6246 0.7948 23 6 3.5969 3.5325 1.2410 24 6 2.0699 3.4479 1.3150 25 8 1.6632 2.0812 1.2215 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8535 0.9973 -1.0772 32 1 4.0004 0.8706 0.6927 33 1 8.0068 3.5108 -1.0410 34 1 8.0612 3.4106 0.7352 35 1 10.1960 4.8009 -0.1435 36 1 11.9347 5.0885 -0.1806 37 1 4.0313 3.0024 2.0886 38 1 3.9067 4.5773 1.2661 39 1 1.6355 4.0136 0.4907 40 1 1.7280 3.8650 2.2622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780139774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -209.785213 kcal Electronic energy + Delta-G solvation = -22434.862939 eV Core-core repulsion = 18827.235525 eV Total energy + Delta-G solvation = -3607.627414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03729 -40.55641 -39.99514 -37.70156 -36.44484 -35.14717 -34.78923 -33.34139 -30.81216 -30.22682 -27.39408 -26.26999 -24.77109 -23.38911 -22.02995 -21.81880 -21.14098 -20.12770 -18.95498 -18.48231 -17.89957 -17.43131 -17.37133 -16.77882 -16.51527 -15.96741 -15.58623 -15.50883 -15.24888 -14.83767 -14.73768 -14.56431 -14.10234 -13.92255 -13.70844 -13.42138 -12.86054 -12.83724 -12.76558 -12.45082 -12.19921 -11.98682 -11.98346 -11.92142 -11.83992 -11.77683 -11.64060 -11.62138 -11.23494 -10.64021 -10.52323 -10.23290 -9.01114 -6.17362 0.95827 1.25820 1.43031 1.55189 1.82791 1.83768 2.39162 2.79289 2.84977 3.07557 3.37720 3.50050 3.59537 3.79034 3.84721 3.97463 3.99951 4.03704 4.14571 4.27328 4.32220 4.39204 4.48997 4.65697 4.68809 4.78806 4.87856 5.00265 5.03506 5.10339 5.14756 5.22226 5.29079 5.47900 5.52465 5.85424 6.27367 6.38656 6.50106 6.59489 7.26954 7.69701 8.45776 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.049418 B = 0.002728 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.454136 B =10261.305196 C =10681.278454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.077 0.923 5 C -0.129 4.129 6 C -0.077 4.077 7 H 0.131 0.869 8 C 0.463 3.537 9 O -0.530 6.530 10 O -0.341 6.341 11 C 0.070 3.930 12 C 0.441 3.559 13 O -0.611 6.611 14 N -0.572 5.572 15 C -0.413 4.413 16 H 0.079 0.921 17 C -0.038 4.038 18 N -0.910 5.910 19 Si 1.138 2.862 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.148 4.148 24 C 0.067 3.933 25 O -0.390 6.390 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.388 0.612 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.475 -10.750 -0.327 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.167 4.167 6 C -0.095 4.095 7 H 0.149 0.851 8 C 0.307 3.693 9 O -0.420 6.420 10 O -0.256 6.256 11 C -0.008 4.008 12 C 0.228 3.772 13 O -0.496 6.496 14 N -0.211 5.211 15 C -0.541 4.541 16 H 0.097 0.903 17 C -0.237 4.237 18 N -0.549 5.549 19 Si 0.957 3.043 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.186 4.186 24 C -0.009 4.009 25 O -0.310 6.310 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.223 0.777 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.436 -9.649 -0.144 21.700 hybrid contribution -0.366 -1.319 -0.186 1.382 sum -19.803 -10.968 -0.330 22.640 Atomic orbital electron populations 1.21694 0.94534 1.02096 1.02090 1.21573 0.97202 0.93363 1.03257 1.22264 0.91459 0.95331 0.87456 0.90536 1.22160 0.97089 0.93173 1.04280 1.21275 0.84607 1.00790 1.02874 0.85144 1.24494 0.92816 0.80711 0.71269 1.90636 1.70924 1.33877 1.46532 1.86563 1.20607 1.35209 1.83216 1.22501 0.78031 0.94993 1.05227 1.20056 0.82723 0.90542 0.83885 1.90532 1.59246 1.43898 1.55972 1.41811 1.05213 1.08889 1.65205 1.20604 0.94328 0.85077 1.54107 0.90265 1.27966 0.91969 1.10078 0.93658 1.70942 1.37535 0.99435 1.46943 0.82573 0.75558 0.67964 0.78187 1.19359 1.19685 1.19984 1.22228 0.98964 1.02260 0.95099 1.22661 0.91168 0.82848 1.04238 1.87933 1.78423 1.25391 1.39220 0.92956 0.92203 0.91895 0.89183 0.91807 0.89366 0.91460 0.87532 0.87742 0.77733 0.92811 0.91493 0.89462 0.91044 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.81 71.98 0.71 -1.05 16 2 C -0.12 -1.56 5.64 30.59 0.17 -1.39 16 3 C 0.09 1.44 2.64 30.62 0.08 1.52 16 4 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.13 -2.44 4.02 30.69 0.12 -2.32 16 6 C -0.08 -1.65 2.71 -11.42 -0.03 -1.68 16 7 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 8 C 0.46 14.00 7.26 71.24 0.52 14.51 16 9 O -0.53 -17.86 15.72 21.95 0.35 -17.51 16 10 O -0.34 -12.37 9.69 -45.07 -0.44 -12.81 16 11 C 0.07 2.61 5.94 71.23 0.42 3.03 16 12 C 0.44 21.46 7.86 87.66 0.69 22.15 16 13 O -0.61 -34.69 16.08 15.72 0.25 -34.44 16 14 N -0.57 -29.06 5.28 -306.98 -1.62 -30.68 16 15 C -0.41 -23.28 9.68 84.04 0.81 -22.46 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.04 -2.01 5.50 84.93 0.47 -1.54 16 18 N -0.91 -50.03 13.68 21.66 0.30 -49.74 16 19 Si 1.14 47.39 29.92 68.60 2.05 49.45 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 C -0.15 -2.98 5.36 30.69 0.16 -2.81 16 24 C 0.07 1.05 6.84 72.02 0.49 1.54 16 25 O -0.39 -7.18 9.95 -148.98 -1.48 -8.66 16 26 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.49 8.02 -2.39 -0.02 1.48 16 33 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 34 H 0.10 3.52 8.13 -2.38 -0.02 3.50 16 35 H 0.39 17.95 6.73 -92.70 -0.62 17.32 16 36 H 0.26 13.87 6.78 -92.71 -0.63 13.24 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.66 337.25 4.58 -67.08 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.56 Total: 27.81 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.62 Total: 9.50 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.33 Total: -80.41 kcal Atomic # 8 Polarization: -72.10 SS G_CDS: -1.32 Total: -73.43 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.05 Total: 49.45 kcal Total: -71.66 4.58 -67.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.709 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds