Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 109.47610 * 54.97429 * 3 2 1 5 5 C 1.53094 * 109.48409 * 175.00102 * 3 2 1 6 6 C 1.53178 * 109.16400 * 177.59429 * 5 3 2 7 7 H 1.09005 * 109.54180 * 62.88631 * 6 5 3 8 8 C 1.50692 * 109.54402 * 183.15245 * 6 5 3 9 9 O 1.20832 * 120.00135 * 359.97438 * 8 6 5 10 10 O 1.34232 * 120.00138 * 179.97438 * 8 6 5 11 11 C 1.45199 * 117.00121 * 180.02562 * 10 8 6 12 12 C 1.50704 * 109.47361 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99652 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99938 * 180.02562 * 12 11 10 15 15 C 1.37105 * 119.99843 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99697 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00028 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99902 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99671 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47236 * 60.00267 * 19 17 15 21 21 H 1.48501 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47263 * 299.99502 * 19 17 15 23 23 C 1.53182 * 109.03802 * 303.02243 * 6 5 3 24 24 C 1.53093 * 109.16316 * 56.97792 * 23 6 5 25 25 O 1.42900 * 109.41414 * 302.39379 * 24 23 6 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.08999 * 109.52097 * 297.49570 * 5 3 2 32 32 H 1.08992 * 109.51813 * 57.68876 * 5 3 2 33 33 H 1.09002 * 109.47042 * 300.00158 * 11 10 8 34 34 H 1.09003 * 109.47310 * 59.99687 * 11 10 8 35 35 H 0.97001 * 120.00253 * 359.97438 * 14 12 11 36 36 H 0.96999 * 119.99445 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.52211 * 176.88955 * 23 6 5 38 38 H 1.09004 * 109.51648 * 297.01450 * 23 6 5 39 39 H 1.08993 * 109.48025 * 62.37888 * 24 23 6 40 40 H 1.08995 * 109.47896 * 182.40313 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9817 0.8415 5 6 3.5658 1.4446 0.1258 6 6 4.0734 2.8885 0.0646 7 1 3.6791 3.4498 0.9117 8 6 5.5796 2.8957 0.1098 9 8 6.1868 1.8537 0.1839 10 8 6.2468 4.0597 0.0677 11 6 7.6964 3.9908 0.1147 12 6 8.2677 5.3842 0.0582 13 8 7.5261 6.3411 -0.0150 14 7 9.6027 5.5668 0.0880 15 6 10.1225 6.8344 0.0361 16 1 9.4621 7.6865 -0.0291 17 6 11.4988 7.0227 0.0673 18 7 12.3022 5.9859 0.1471 19 14 12.2069 8.7498 -0.0042 20 1 11.7109 9.5365 1.1535 21 1 13.6895 8.6792 0.0435 22 1 11.7836 9.4065 -1.2671 23 6 3.5968 3.5307 -1.2420 24 6 2.0699 3.4480 -1.3149 25 8 1.6632 2.0813 -1.2215 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8534 0.9975 1.0773 32 1 3.9995 0.8710 -0.6933 33 1 8.0073 3.5083 1.0414 34 1 8.0604 3.4136 -0.7353 35 1 10.1958 4.8014 0.1462 36 1 13.2630 6.1175 0.1693 37 1 3.9068 4.5753 -1.2686 38 1 4.0321 2.9999 -2.0886 39 1 1.6355 4.0137 -0.4907 40 1 1.7281 3.8652 -2.2620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780139791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -189.463128 kcal Electronic energy + Delta-G solvation = -22395.280934 eV Core-core repulsion = 18788.534752 eV Total energy + Delta-G solvation = -3606.746183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.75118 -39.38086 -38.11946 -36.16354 -34.37650 -34.01682 -33.93858 -31.39670 -30.07796 -28.61747 -26.35220 -24.62417 -23.93634 -22.39614 -21.12771 -20.05429 -19.59233 -18.08777 -17.60454 -16.73178 -16.58023 -16.38145 -15.86504 -15.37606 -14.91586 -14.65804 -14.33899 -14.10693 -13.96359 -13.94156 -13.65903 -13.26139 -12.90908 -12.30399 -12.12663 -12.06816 -11.98487 -11.63426 -11.55472 -11.42941 -11.17851 -11.12552 -10.91997 -10.66178 -10.50284 -10.42165 -10.35024 -10.28180 -9.72675 -9.61106 -8.53862 -8.09967 -6.51332 -3.93559 2.27345 2.67275 3.14283 3.21727 3.26351 3.52122 3.72166 4.08951 4.28672 4.43612 4.49179 4.63284 4.81859 4.84323 4.90306 5.05417 5.08838 5.13481 5.16577 5.19958 5.40985 5.43624 5.51838 5.54194 5.59674 5.67791 5.68880 5.76939 5.83340 5.90949 6.01120 6.04211 6.06254 6.62135 6.99672 7.46107 7.82551 7.94697 8.46944 9.05399 9.37679 9.87583 10.65821 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.049518 B = 0.002719 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.310970 B =10296.248705 C =10714.211259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.135 4.135 6 C -0.080 4.080 7 H 0.110 0.890 8 C 0.463 3.537 9 O -0.512 6.512 10 O -0.324 6.324 11 C 0.060 3.940 12 C 0.438 3.562 13 O -0.577 6.577 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.150 4.150 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.275 0.725 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 -10.463 -0.148 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.173 4.173 6 C -0.099 4.099 7 H 0.128 0.872 8 C 0.305 3.695 9 O -0.401 6.401 10 O -0.238 6.238 11 C -0.018 4.018 12 C 0.223 3.777 13 O -0.461 6.461 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.538 5.538 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.188 4.188 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.923 -10.211 -0.315 21.505 hybrid contribution 1.322 0.391 0.284 1.408 sum -17.601 -9.820 -0.031 20.156 Atomic orbital electron populations 1.21719 0.95182 1.01515 1.02276 1.21537 0.96666 0.94129 1.03018 1.22165 0.92739 0.94408 0.87307 0.92128 1.22164 0.95953 0.94510 1.04624 1.21068 0.87939 0.99317 1.01573 0.87232 1.23630 0.91462 0.81926 0.72468 1.90648 1.70256 1.33569 1.45639 1.86546 1.21414 1.33255 1.82605 1.22754 0.76819 0.98807 1.03408 1.19314 0.83629 0.88757 0.86006 1.90556 1.58562 1.41789 1.55161 1.41706 1.04018 1.09655 1.63587 1.19677 0.90777 0.84644 1.48137 0.87666 1.25320 0.95872 0.99720 0.96856 1.69607 1.04584 1.30179 1.49392 0.85848 0.77440 0.81339 0.79200 1.19743 1.20859 1.19740 1.22233 0.97339 1.03142 0.96076 1.22573 0.92861 0.83022 1.02706 1.87930 1.78496 1.24780 1.38472 0.92947 0.92790 0.91893 0.90486 0.90928 0.89925 0.89837 0.89607 0.89598 0.77154 0.91555 0.88691 0.90354 0.92718 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.12 -0.89 5.64 -26.73 -0.15 -1.04 16 3 C 0.09 0.81 2.64 -26.68 -0.07 0.74 16 4 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.13 -1.39 4.02 -26.59 -0.11 -1.50 16 6 C -0.08 -0.93 2.72 -91.59 -0.25 -1.17 16 7 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 8 C 0.46 7.28 7.26 36.00 0.26 7.54 16 9 O -0.51 -8.97 15.72 -18.75 -0.29 -9.27 16 10 O -0.32 -6.01 9.69 -45.91 -0.44 -6.46 16 11 C 0.06 1.15 5.94 36.01 0.21 1.36 16 12 C 0.44 10.59 7.86 -10.99 -0.09 10.51 16 13 O -0.58 -15.99 16.08 -14.11 -0.23 -16.21 16 14 N -0.55 -14.01 5.29 -10.96 -0.06 -14.07 16 15 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 16 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 19 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.15 -1.60 5.36 -26.59 -0.14 -1.75 16 24 C 0.07 0.58 6.84 37.21 0.25 0.83 16 25 O -0.38 -3.85 9.94 -35.23 -0.35 -4.20 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.97 8.02 -51.93 -0.42 0.55 16 33 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 34 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 35 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -32.16 338.96 -6.67 -38.83 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.15 Total: 7.09 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.05 Total: 6.88 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.67 Total: -37.43 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.32 Total: -36.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.16 -6.67 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.632 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds