Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 109.47610 * 54.97429 * 3 2 1 5 5 C 1.53094 * 109.48409 * 175.00102 * 3 2 1 6 6 C 1.53178 * 109.16400 * 177.59429 * 5 3 2 7 7 H 1.09005 * 109.54180 * 62.88631 * 6 5 3 8 8 C 1.50692 * 109.54402 * 183.15245 * 6 5 3 9 9 O 1.20832 * 120.00135 * 359.97438 * 8 6 5 10 10 O 1.34232 * 120.00138 * 179.97438 * 8 6 5 11 11 C 1.45199 * 117.00121 * 180.02562 * 10 8 6 12 12 C 1.50704 * 109.47361 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99652 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99938 * 180.02562 * 12 11 10 15 15 C 1.37105 * 119.99843 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99697 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00028 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99902 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99671 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47236 * 60.00267 * 19 17 15 21 21 H 1.48501 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47263 * 299.99502 * 19 17 15 23 23 C 1.53182 * 109.03802 * 303.02243 * 6 5 3 24 24 C 1.53093 * 109.16316 * 56.97792 * 23 6 5 25 25 O 1.42900 * 109.41414 * 302.39379 * 24 23 6 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.08999 * 109.52097 * 297.49570 * 5 3 2 32 32 H 1.08992 * 109.51813 * 57.68876 * 5 3 2 33 33 H 1.09002 * 109.47042 * 300.00158 * 11 10 8 34 34 H 1.09003 * 109.47310 * 59.99687 * 11 10 8 35 35 H 0.97001 * 120.00253 * 359.97438 * 14 12 11 36 36 H 0.96999 * 119.99445 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.52211 * 176.88955 * 23 6 5 38 38 H 1.09004 * 109.51648 * 297.01450 * 23 6 5 39 39 H 1.08993 * 109.48025 * 62.37888 * 24 23 6 40 40 H 1.08995 * 109.47896 * 182.40313 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9817 0.8415 5 6 3.5658 1.4446 0.1258 6 6 4.0734 2.8885 0.0646 7 1 3.6791 3.4498 0.9117 8 6 5.5796 2.8957 0.1098 9 8 6.1868 1.8537 0.1839 10 8 6.2468 4.0597 0.0677 11 6 7.6964 3.9908 0.1147 12 6 8.2677 5.3842 0.0582 13 8 7.5261 6.3411 -0.0150 14 7 9.6027 5.5668 0.0880 15 6 10.1225 6.8344 0.0361 16 1 9.4621 7.6865 -0.0291 17 6 11.4988 7.0227 0.0673 18 7 12.3022 5.9859 0.1471 19 14 12.2069 8.7498 -0.0042 20 1 11.7109 9.5365 1.1535 21 1 13.6895 8.6792 0.0435 22 1 11.7836 9.4065 -1.2671 23 6 3.5968 3.5307 -1.2420 24 6 2.0699 3.4480 -1.3149 25 8 1.6632 2.0813 -1.2215 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8534 0.9975 1.0773 32 1 3.9995 0.8710 -0.6933 33 1 8.0073 3.5083 1.0414 34 1 8.0604 3.4136 -0.7353 35 1 10.1958 4.8014 0.1462 36 1 13.2630 6.1175 0.1693 37 1 3.9068 4.5753 -1.2686 38 1 4.0321 2.9999 -2.0886 39 1 1.6355 4.0137 -0.4907 40 1 1.7281 3.8652 -2.2620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780139791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = -209.576210 kcal Electronic energy + Delta-G solvation = -22396.153103 eV Core-core repulsion = 18788.534752 eV Total energy + Delta-G solvation = -3607.618351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97109 -40.45378 -39.87467 -37.60264 -36.05682 -35.11467 -34.76122 -33.43919 -30.78585 -30.23148 -27.44155 -26.39126 -24.73715 -23.32772 -21.92573 -21.46877 -21.09092 -20.09991 -18.87955 -17.98212 -17.82186 -17.41010 -17.32532 -16.73487 -16.37154 -15.90738 -15.75530 -15.49531 -15.10956 -14.77062 -14.57790 -14.52662 -14.05118 -13.81197 -13.61456 -13.55557 -12.94656 -12.81201 -12.74155 -12.50804 -12.41528 -12.17091 -12.13705 -11.90950 -11.80719 -11.74475 -11.60511 -11.58967 -11.20369 -10.57487 -10.48336 -10.14388 -8.54135 -6.05178 1.01727 1.31718 1.36394 1.43764 1.54975 1.84542 2.28219 2.83414 2.98593 3.11167 3.43024 3.55668 3.63320 3.86846 3.93997 4.07622 4.10920 4.17191 4.18617 4.31438 4.35425 4.41896 4.51262 4.68599 4.71796 4.81439 4.90301 5.03767 5.06231 5.13886 5.16395 5.28813 5.31496 5.35077 5.49646 5.86518 6.29897 6.42514 6.58035 7.00388 7.37062 7.90240 8.62647 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.049518 B = 0.002719 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.310970 B =10296.248705 C =10714.211259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.077 0.923 5 C -0.129 4.129 6 C -0.077 4.077 7 H 0.131 0.869 8 C 0.462 3.538 9 O -0.531 6.531 10 O -0.341 6.341 11 C 0.070 3.930 12 C 0.437 3.563 13 O -0.617 6.617 14 N -0.558 5.558 15 C -0.339 4.339 16 H 0.085 0.915 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.148 4.148 24 C 0.067 3.933 25 O -0.391 6.391 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.281 0.719 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 -10.674 0.294 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.094 0.906 5 C -0.167 4.167 6 C -0.096 4.096 7 H 0.148 0.852 8 C 0.307 3.693 9 O -0.421 6.421 10 O -0.256 6.256 11 C -0.008 4.008 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.103 0.897 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.185 4.185 24 C -0.009 4.009 25 O -0.310 6.310 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.662 -10.459 0.127 22.272 hybrid contribution 1.535 0.398 0.143 1.592 sum -18.128 -10.062 0.270 20.735 Atomic orbital electron populations 1.21692 0.94547 1.02080 1.02084 1.21571 0.97185 0.93389 1.03251 1.22265 0.91495 0.95303 0.87446 0.90555 1.22156 0.97055 0.93244 1.04249 1.21266 0.84713 1.00734 1.02848 0.85163 1.24468 0.92796 0.80776 0.71301 1.90635 1.70938 1.33923 1.46576 1.86558 1.20790 1.35071 1.83155 1.22517 0.77758 0.95353 1.05124 1.20069 0.83011 0.90380 0.84222 1.90520 1.59381 1.43806 1.56636 1.41752 1.04710 1.09278 1.63770 1.19696 0.91415 0.85112 1.50589 0.89684 1.26156 0.95560 1.03710 0.95600 1.69669 1.05090 1.31882 1.48889 0.84898 0.77183 0.76553 0.79178 1.19405 1.19395 1.19444 1.22224 0.98902 1.02311 0.95106 1.22657 0.91202 0.82833 1.04215 1.87930 1.78447 1.25405 1.39224 0.92201 0.91909 0.92966 0.89194 0.91817 0.89391 0.91477 0.87682 0.87881 0.76597 0.90924 0.89440 0.91490 0.91041 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.81 71.98 0.71 -1.07 16 2 C -0.12 -1.59 5.64 30.59 0.17 -1.42 16 3 C 0.09 1.46 2.64 30.63 0.08 1.54 16 4 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.13 -2.49 4.02 30.69 0.12 -2.37 16 6 C -0.08 -1.68 2.72 -11.42 -0.03 -1.71 16 7 H 0.13 2.34 8.14 -2.38 -0.02 2.33 16 8 C 0.46 14.21 7.26 71.23 0.52 14.73 16 9 O -0.53 -18.21 15.72 21.95 0.34 -17.87 16 10 O -0.34 -12.53 9.69 -45.08 -0.44 -12.97 16 11 C 0.07 2.66 5.94 71.24 0.42 3.08 16 12 C 0.44 21.39 7.86 87.66 0.69 22.08 16 13 O -0.62 -34.96 16.08 15.73 0.25 -34.71 16 14 N -0.56 -28.72 5.29 -306.98 -1.62 -30.35 16 15 C -0.34 -19.03 9.68 84.04 0.81 -18.21 16 16 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 18 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 19 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.15 -3.02 5.36 30.69 0.16 -2.85 16 24 C 0.07 1.07 6.84 72.01 0.49 1.56 16 25 O -0.39 -7.28 9.94 -148.98 -1.48 -8.76 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.75 7.83 -2.38 -0.02 0.73 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.52 8.02 -2.39 -0.02 1.50 16 33 H 0.11 3.60 8.13 -2.39 -0.02 3.58 16 34 H 0.10 3.57 8.13 -2.39 -0.02 3.55 16 35 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 36 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.76 338.96 4.29 -64.46 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.31 Total: 29.33 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 4.62 Total: 15.33 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.34 Total: -78.71 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -1.32 Total: -74.31 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -68.76 4.29 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.112 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds