Wall clock time and date at job start Tue Mar 31 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.48511 * 305.01993 * 3 2 1 5 5 C 1.53094 * 109.47805 * 184.99880 * 3 2 1 6 6 C 1.53176 * 109.16455 * 182.41107 * 5 3 2 7 7 H 1.08997 * 109.54416 * 176.84860 * 6 5 3 8 8 C 1.50695 * 109.54388 * 297.02381 * 6 5 3 9 9 O 1.20831 * 120.00325 * 0.02562 * 8 6 5 10 10 O 1.34229 * 120.00186 * 179.97438 * 8 6 5 11 11 C 1.45207 * 117.00113 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47323 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99765 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00298 * 180.02562 * 12 11 10 15 15 C 1.37089 * 120.00257 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00071 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00492 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99491 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00364 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47153 * 119.99669 * 19 17 15 22 22 H 1.48493 * 109.47065 * 239.99812 * 19 17 15 23 23 C 1.53180 * 109.03541 * 56.98043 * 6 5 3 24 24 C 1.53092 * 109.16303 * 303.01835 * 23 6 5 25 25 O 1.42901 * 109.41395 * 57.61127 * 24 23 6 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09004 * 109.52517 * 302.31856 * 5 3 2 32 32 H 1.08997 * 109.52412 * 62.43998 * 5 3 2 33 33 H 1.09001 * 109.47075 * 300.00443 * 11 10 8 34 34 H 1.09008 * 109.47021 * 60.00014 * 11 10 8 35 35 H 0.97002 * 119.99455 * 0.02562 * 14 12 11 36 36 H 0.96996 * 119.99879 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.52377 * 62.92920 * 23 6 5 38 38 H 1.09003 * 109.52106 * 183.11399 * 23 6 5 39 39 H 1.08995 * 109.47901 * 177.59074 * 24 23 6 40 40 H 1.08996 * 109.47900 * 297.61716 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.0733 2.8886 -0.0644 7 1 5.1627 2.8938 -0.0972 8 6 3.5300 3.6641 -1.2368 9 8 2.8100 3.1197 -2.0400 10 8 3.8452 4.9601 -1.3882 11 6 3.2865 5.6440 -2.5408 12 6 3.7456 7.0794 -2.5445 13 8 4.4726 7.4858 -1.6628 14 7 3.3485 7.9115 -3.5276 15 6 3.7665 9.2170 -3.5312 16 1 4.4145 9.5788 -2.7466 17 6 3.3567 10.0751 -4.5444 18 7 2.5686 9.6348 -5.4995 19 14 3.9270 11.8539 -4.5498 20 1 4.8013 12.0969 -3.3743 21 1 4.6860 12.1266 -5.7966 22 1 2.7466 12.7523 -4.4823 23 6 3.5968 3.5306 1.2422 24 6 2.0698 3.4479 1.3151 25 8 1.6631 2.0812 1.2216 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.9996 0.8710 0.6933 32 1 3.8534 0.9965 -1.0768 33 1 3.6229 5.1522 -3.4535 34 1 2.1981 5.6112 -2.4905 35 1 2.7668 7.5864 -4.2325 36 1 2.2828 10.2336 -6.2070 37 1 4.0312 2.9991 2.0888 38 1 3.9067 4.5753 1.2689 39 1 1.7281 3.8649 2.2624 40 1 1.6354 4.0138 0.4910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780139793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:32 Heat of formation + Delta-G solvation = -185.573661 kcal Electronic energy + Delta-G solvation = -22978.670231 eV Core-core repulsion = 19372.092709 eV Total energy + Delta-G solvation = -3606.577523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02889 -39.11459 -38.05109 -36.15804 -34.30928 -34.01913 -33.83596 -31.40530 -29.97985 -28.58255 -26.10891 -24.65285 -23.84415 -22.67341 -21.35480 -19.76968 -19.59838 -18.10097 -17.32953 -16.70255 -16.56422 -16.29518 -15.97325 -15.50208 -14.81819 -14.59564 -14.19997 -14.05806 -13.88233 -13.77221 -13.43151 -13.22458 -12.86137 -12.41305 -12.23547 -11.99192 -11.90932 -11.77012 -11.64519 -11.32816 -11.17195 -11.07518 -10.84433 -10.68676 -10.44806 -10.41010 -10.32604 -10.08359 -9.64106 -9.44115 -8.55116 -8.10871 -6.52417 -3.94486 2.23397 2.67236 3.09927 3.22322 3.29730 3.66719 3.70774 4.08602 4.30150 4.49420 4.56385 4.69857 4.79230 4.97903 5.03827 5.11814 5.12509 5.21459 5.27144 5.36059 5.48599 5.52503 5.60485 5.64842 5.66215 5.66766 5.79138 5.83055 5.86615 5.92278 6.02745 6.07315 6.19430 6.62358 7.15098 7.45715 7.80122 7.93546 8.45814 9.04757 9.36726 9.86442 10.64874 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003174 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.520792 B = 8819.071129 C = 9107.466366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.076 3.924 4 H 0.083 0.917 5 C -0.133 4.133 6 C -0.083 4.083 7 H 0.114 0.886 8 C 0.459 3.541 9 O -0.511 6.511 10 O -0.323 6.323 11 C 0.059 3.941 12 C 0.438 3.562 13 O -0.576 6.576 14 N -0.553 5.553 15 C -0.302 4.302 16 H 0.107 0.893 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.149 4.149 24 C 0.058 3.942 25 O -0.379 6.379 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -16.899 9.558 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.170 4.170 6 C -0.102 4.102 7 H 0.132 0.868 8 C 0.302 3.698 9 O -0.400 6.400 10 O -0.237 6.237 11 C -0.018 4.018 12 C 0.223 3.777 13 O -0.460 6.460 14 N -0.190 5.190 15 C -0.431 4.431 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.186 4.186 24 C -0.019 4.019 25 O -0.298 6.298 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.299 -16.738 9.869 19.474 hybrid contribution 0.016 0.870 -1.010 1.333 sum -1.283 -15.868 8.859 18.219 Atomic orbital electron populations 1.21713 0.95305 1.01276 1.02424 1.21503 0.96766 0.94326 1.02370 1.22449 0.93162 0.94603 0.87949 0.89967 1.22114 0.97339 0.93878 1.03717 1.21131 1.02863 0.94448 0.91741 0.86773 1.23756 0.78255 0.81277 0.86467 1.90606 1.35204 1.70086 1.44107 1.86555 1.67488 1.23305 1.46367 1.22759 0.98969 0.93097 0.86988 1.19310 0.86862 0.85936 0.85612 1.90561 1.40227 1.76934 1.38279 1.41716 1.44228 1.10003 1.23035 1.19775 1.28413 0.84570 1.10370 0.87557 1.25320 0.96463 1.00752 0.95238 1.69622 1.34099 1.37083 1.12925 0.85741 0.78520 0.81294 0.78455 1.19072 1.20600 1.20598 1.22227 0.97416 1.03187 0.95810 1.22592 0.93388 0.83358 1.02593 1.87890 1.78739 1.24368 1.38806 0.92945 0.92008 0.92789 0.91425 0.90685 0.89754 0.89932 0.89575 0.89663 0.77176 0.91655 0.89434 0.88757 0.88162 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.81 37.16 0.36 -1.05 16 2 C -0.11 -1.07 5.64 -26.73 -0.15 -1.22 16 3 C 0.08 0.87 2.35 -26.68 -0.06 0.81 16 4 H 0.08 1.15 5.82 -51.93 -0.30 0.84 16 5 C -0.13 -1.36 4.56 -26.59 -0.12 -1.48 16 6 C -0.08 -0.95 3.14 -91.59 -0.29 -1.24 16 7 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 8 C 0.46 7.04 5.93 36.00 0.21 7.25 16 9 O -0.51 -8.49 13.60 -18.75 -0.26 -8.75 16 10 O -0.32 -5.89 9.63 -45.90 -0.44 -6.33 16 11 C 0.06 1.13 5.94 36.00 0.21 1.34 16 12 C 0.44 10.49 7.86 -10.99 -0.09 10.41 16 13 O -0.58 -15.87 16.08 -14.11 -0.23 -16.10 16 14 N -0.55 -13.91 5.29 -10.96 -0.06 -13.97 16 15 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 16 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 19 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.15 -1.58 5.60 -26.59 -0.15 -1.73 16 24 C 0.06 0.66 6.62 37.20 0.25 0.91 16 25 O -0.38 -4.66 9.94 -35.23 -0.35 -5.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 34 H 0.09 1.48 8.13 -51.92 -0.42 1.05 16 35 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -31.66 332.97 -6.66 -38.32 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.99 Total: 8.36 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.06 Total: 6.12 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.67 Total: -37.21 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.27 Total: -36.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.66 -6.66 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.249 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds