Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.48511 * 305.01993 * 3 2 1 5 5 C 1.53094 * 109.47805 * 184.99880 * 3 2 1 6 6 C 1.53176 * 109.16455 * 182.41107 * 5 3 2 7 7 H 1.08997 * 109.54416 * 176.84860 * 6 5 3 8 8 C 1.50695 * 109.54388 * 297.02381 * 6 5 3 9 9 O 1.20831 * 120.00325 * 0.02562 * 8 6 5 10 10 O 1.34229 * 120.00186 * 179.97438 * 8 6 5 11 11 C 1.45207 * 117.00113 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47323 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99765 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00298 * 180.02562 * 12 11 10 15 15 C 1.37089 * 120.00257 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00071 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00492 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99491 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00364 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47153 * 119.99669 * 19 17 15 22 22 H 1.48493 * 109.47065 * 239.99812 * 19 17 15 23 23 C 1.53180 * 109.03541 * 56.98043 * 6 5 3 24 24 C 1.53092 * 109.16303 * 303.01835 * 23 6 5 25 25 O 1.42901 * 109.41395 * 57.61127 * 24 23 6 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09004 * 109.52517 * 302.31856 * 5 3 2 32 32 H 1.08997 * 109.52412 * 62.43998 * 5 3 2 33 33 H 1.09001 * 109.47075 * 300.00443 * 11 10 8 34 34 H 1.09008 * 109.47021 * 60.00014 * 11 10 8 35 35 H 0.97002 * 119.99455 * 0.02562 * 14 12 11 36 36 H 0.96996 * 119.99879 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.52377 * 62.92920 * 23 6 5 38 38 H 1.09003 * 109.52106 * 183.11399 * 23 6 5 39 39 H 1.08995 * 109.47901 * 177.59074 * 24 23 6 40 40 H 1.08996 * 109.47900 * 297.61716 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.0733 2.8886 -0.0644 7 1 5.1627 2.8938 -0.0972 8 6 3.5300 3.6641 -1.2368 9 8 2.8100 3.1197 -2.0400 10 8 3.8452 4.9601 -1.3882 11 6 3.2865 5.6440 -2.5408 12 6 3.7456 7.0794 -2.5445 13 8 4.4726 7.4858 -1.6628 14 7 3.3485 7.9115 -3.5276 15 6 3.7665 9.2170 -3.5312 16 1 4.4145 9.5788 -2.7466 17 6 3.3567 10.0751 -4.5444 18 7 2.5686 9.6348 -5.4995 19 14 3.9270 11.8539 -4.5498 20 1 4.8013 12.0969 -3.3743 21 1 4.6860 12.1266 -5.7966 22 1 2.7466 12.7523 -4.4823 23 6 3.5968 3.5306 1.2422 24 6 2.0698 3.4479 1.3151 25 8 1.6631 2.0812 1.2216 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.9996 0.8710 0.6933 32 1 3.8534 0.9965 -1.0768 33 1 3.6229 5.1522 -3.4535 34 1 2.1981 5.6112 -2.4905 35 1 2.7668 7.5864 -4.2325 36 1 2.2828 10.2336 -6.2070 37 1 4.0312 2.9991 2.0888 38 1 3.9067 4.5753 1.2689 39 1 1.7281 3.8649 2.2624 40 1 1.6354 4.0138 0.4910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780139793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -205.534041 kcal Electronic energy + Delta-G solvation = -22979.535778 eV Core-core repulsion = 19372.092709 eV Total energy + Delta-G solvation = -3607.443070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19183 -40.44251 -39.69317 -37.54124 -36.06112 -35.15079 -34.72706 -33.44048 -30.80334 -30.19925 -27.26254 -26.39725 -24.71893 -23.77151 -22.19231 -21.47447 -20.89393 -20.10322 -18.60574 -17.93579 -17.87681 -17.44400 -17.12805 -17.02064 -16.42812 -15.92961 -15.80540 -15.48239 -14.88809 -14.75970 -14.59495 -14.34034 -14.06848 -13.81453 -13.59587 -13.49130 -13.13437 -12.95878 -12.76488 -12.58849 -12.48817 -12.14843 -12.12024 -11.92372 -11.86449 -11.74780 -11.64394 -11.60728 -11.05494 -10.54195 -10.36675 -10.14354 -8.54713 -6.05510 1.03062 1.33040 1.33962 1.44216 1.58075 1.83745 2.28145 2.80267 2.99285 3.10698 3.42269 3.60050 3.69541 3.85153 3.90301 4.04962 4.09743 4.17402 4.19603 4.27286 4.39320 4.46961 4.55681 4.68641 4.76909 4.83376 4.88137 4.99522 5.04121 5.07579 5.10534 5.24692 5.34677 5.38362 5.45353 5.86562 6.25501 6.42534 6.59647 7.00482 7.36834 7.90019 8.62582 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003174 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.520792 B = 8819.071129 C = 9107.466366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.070 3.930 4 H 0.052 0.948 5 C -0.127 4.127 6 C -0.082 4.082 7 H 0.137 0.863 8 C 0.457 3.543 9 O -0.526 6.526 10 O -0.341 6.341 11 C 0.071 3.929 12 C 0.437 3.563 13 O -0.616 6.616 14 N -0.558 5.558 15 C -0.338 4.338 16 H 0.085 0.915 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.143 4.143 24 C 0.054 3.946 25 O -0.385 6.385 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.281 0.719 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -17.930 10.054 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.013 3.987 4 H 0.070 0.930 5 C -0.165 4.165 6 C -0.101 4.101 7 H 0.155 0.845 8 C 0.301 3.699 9 O -0.415 6.415 10 O -0.256 6.256 11 C -0.007 4.007 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.103 0.897 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.181 4.181 24 C -0.023 4.023 25 O -0.304 6.304 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.884 -17.798 10.346 20.605 hybrid contribution -0.170 1.133 -1.159 1.630 sum -1.054 -16.665 9.186 19.058 Atomic orbital electron populations 1.21708 0.95588 1.02070 1.01331 1.21530 0.96550 0.93104 1.03532 1.22499 0.94211 0.95293 0.86696 0.92988 1.22142 0.96207 0.93130 1.05002 1.21377 1.04074 0.94486 0.90114 0.84497 1.24631 0.77803 0.80169 0.87284 1.90603 1.35878 1.70017 1.45016 1.86566 1.68006 1.25014 1.46023 1.22490 0.99682 0.90088 0.88405 1.20072 0.85602 0.87663 0.84321 1.90524 1.41886 1.78280 1.39603 1.41756 1.44417 1.09786 1.23568 1.19760 1.29821 0.86104 1.10980 0.89729 1.26142 0.95993 1.04504 0.94323 1.69678 1.34130 1.38605 1.13137 0.84792 0.78323 0.76248 0.78507 1.19493 1.19409 1.19442 1.22220 0.96603 1.02926 0.96319 1.22667 0.94178 0.82996 1.02462 1.87887 1.79114 1.24463 1.38972 0.91201 0.93056 0.93929 0.90102 0.89549 0.86989 0.89659 0.87722 0.88114 0.76632 0.90941 0.86568 0.89846 0.86482 0.96000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.81 71.98 0.71 -1.96 16 2 C -0.11 -1.88 5.64 30.60 0.17 -1.71 16 3 C 0.07 1.54 2.35 30.63 0.07 1.61 16 4 H 0.05 1.46 5.82 -2.39 -0.01 1.44 16 5 C -0.13 -2.29 4.56 30.68 0.14 -2.15 16 6 C -0.08 -1.72 3.14 -11.42 -0.04 -1.75 16 7 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 8 C 0.46 13.71 5.93 71.23 0.42 14.14 16 9 O -0.53 -17.30 13.60 21.95 0.30 -17.00 16 10 O -0.34 -12.42 9.63 -45.05 -0.43 -12.86 16 11 C 0.07 2.68 5.94 71.24 0.42 3.10 16 12 C 0.44 21.36 7.86 87.66 0.69 22.05 16 13 O -0.62 -34.91 16.08 15.73 0.25 -34.65 16 14 N -0.56 -28.69 5.29 -306.99 -1.62 -30.31 16 15 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 16 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 17 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 18 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 19 Si 1.00 41.90 29.55 68.60 2.03 43.92 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 C -0.14 -2.79 5.60 30.69 0.17 -2.62 16 24 C 0.05 1.20 6.62 72.01 0.48 1.67 16 25 O -0.38 -8.99 9.94 -148.98 -1.48 -10.47 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16 33 H 0.10 3.58 8.13 -2.39 -0.02 3.56 16 34 H 0.10 3.49 8.13 -2.38 -0.02 3.48 16 35 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 36 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.84 8.07 -2.39 -0.02 1.82 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.02 0.59 7.38 -2.39 -0.02 0.57 16 Total: -1.00 -68.72 332.97 4.16 -64.56 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.31 Total: 30.85 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 4.52 Total: 14.25 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.34 Total: -78.61 kcal Atomic # 8 Polarization: -73.62 SS G_CDS: -1.36 Total: -74.98 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -68.72 4.16 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.972 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds