Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08997 * 109.47960 * 54.97642 * 3 2 1 5 5 C 1.53094 * 109.47707 * 174.99759 * 3 2 1 6 6 C 1.53181 * 109.16535 * 62.37483 * 5 3 2 7 7 H 1.09004 * 109.53970 * 297.11442 * 6 5 3 8 8 C 1.50695 * 109.54214 * 176.93636 * 6 5 3 9 9 O 1.20826 * 120.00580 * 359.97438 * 8 6 5 10 10 O 1.34232 * 119.99601 * 180.02562 * 8 6 5 11 11 C 1.45201 * 116.99762 * 179.97438 * 10 8 6 12 12 C 1.50705 * 109.46877 * 179.97438 * 11 10 8 13 13 O 1.21287 * 120.00018 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00084 * 179.97438 * 14 12 11 16 16 H 1.08011 * 119.99910 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00466 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00202 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99464 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.46948 * 90.00352 * 19 17 15 21 21 H 1.48499 * 109.46616 * 210.00024 * 19 17 15 22 22 H 1.48490 * 109.47260 * 330.00154 * 19 17 15 23 23 C 1.53176 * 109.03400 * 56.97675 * 6 5 3 24 24 C 1.53096 * 109.16488 * 303.02083 * 23 6 5 25 25 O 1.42897 * 109.41243 * 57.61109 * 24 23 6 26 26 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 28 28 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.51866 * 182.27986 * 5 3 2 32 32 H 1.08997 * 109.52246 * 302.46611 * 5 3 2 33 33 H 1.08999 * 109.47292 * 299.99506 * 11 10 8 34 34 H 1.08993 * 109.47216 * 59.99845 * 11 10 8 35 35 H 0.97004 * 120.00132 * 0.02562 * 14 12 11 36 36 H 0.96994 * 119.99678 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.52083 * 62.92943 * 23 6 5 38 38 H 1.09003 * 109.52043 * 183.11338 * 23 6 5 39 39 H 1.08998 * 109.47866 * 177.59083 * 24 23 6 40 40 H 1.09002 * 109.48140 * 297.62884 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9818 0.8415 5 6 3.5656 1.4447 0.1259 6 6 4.1715 0.7375 -1.0904 7 1 3.8504 -0.3040 -1.1039 8 6 5.6752 0.8006 -1.0129 9 8 6.2095 1.3545 -0.0814 10 8 6.4210 0.2424 -1.9793 11 6 7.8628 0.3419 -1.8396 12 6 8.5288 -0.3370 -3.0087 13 8 7.8546 -0.8534 -3.8746 14 7 9.8736 -0.3693 -3.0925 15 6 10.4794 -0.9874 -4.1557 16 1 9.8791 -1.4480 -4.9264 17 6 11.8659 -1.0213 -4.2419 18 7 12.4466 -1.6132 -5.2613 19 14 12.9042 -0.2252 -2.9086 20 1 13.1940 -1.2213 -1.8461 21 1 14.1798 0.2568 -3.4964 22 1 12.1642 0.9215 -2.3235 23 6 3.6924 1.4380 -2.3655 24 6 2.1617 1.4361 -2.3952 25 8 1.6632 2.0812 -1.2216 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9263 2.4725 0.1667 32 1 3.8568 0.9192 1.0353 33 1 8.1539 1.3921 -1.8149 34 1 8.1725 -0.1428 -0.9138 35 1 10.4128 0.0440 -2.4001 36 1 13.4144 -1.6372 -5.3212 37 1 4.0556 2.4657 -2.3751 38 1 4.0743 0.9076 -3.2379 39 1 1.8146 1.9709 -3.2792 40 1 1.8000 0.4083 -2.4265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780139795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = -200.650647 kcal Electronic energy + Delta-G solvation = -22689.290860 eV Core-core repulsion = 19082.059550 eV Total energy + Delta-G solvation = -3607.231310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04298 -40.69695 -40.05023 -37.61581 -36.10773 -34.93067 -34.35638 -33.88524 -31.13780 -30.38020 -27.40310 -26.21857 -24.62443 -23.90079 -22.17886 -21.56895 -20.55374 -20.15456 -19.02632 -18.13541 -17.82811 -17.52455 -17.08882 -16.85150 -16.51904 -15.94515 -15.72866 -15.42877 -15.03488 -14.79571 -14.66217 -14.44095 -14.22737 -13.96327 -13.71571 -13.63507 -13.09547 -13.02193 -12.83009 -12.48446 -12.48011 -12.06148 -12.01861 -11.89771 -11.89204 -11.78078 -11.60997 -11.55157 -11.08177 -10.63620 -10.40877 -10.36311 -8.47964 -6.11211 1.02024 1.27483 1.31844 1.33103 1.43871 1.73063 2.18432 2.75355 2.94186 3.06273 3.41782 3.60781 3.62544 3.84973 3.86449 3.99953 4.04109 4.09700 4.15192 4.23851 4.34605 4.40188 4.58261 4.68104 4.77574 4.81970 4.88587 5.00542 5.03387 5.16665 5.19454 5.24742 5.33975 5.45923 5.46393 5.83035 6.28792 6.43413 6.58295 6.75132 7.23281 7.74796 8.68617 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039387 B = 0.003018 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.715204 B = 9275.221282 C = 9585.915912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 C 0.094 3.906 4 H 0.120 0.880 5 C -0.128 4.128 6 C -0.077 4.077 7 H 0.127 0.873 8 C 0.464 3.536 9 O -0.528 6.528 10 O -0.343 6.343 11 C 0.066 3.934 12 C 0.448 3.552 13 O -0.607 6.607 14 N -0.576 5.576 15 C -0.334 4.334 16 H 0.061 0.939 17 C -0.007 4.007 18 N -0.925 5.925 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.271 1.271 22 H -0.233 1.233 23 C -0.147 4.147 24 C 0.061 3.939 25 O -0.386 6.386 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.393 0.607 36 H 0.283 0.717 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 7.410 14.861 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.036 3.964 4 H 0.137 0.863 5 C -0.166 4.166 6 C -0.096 4.096 7 H 0.145 0.855 8 C 0.308 3.692 9 O -0.417 6.417 10 O -0.258 6.258 11 C -0.011 4.011 12 C 0.235 3.765 13 O -0.492 6.492 14 N -0.218 5.218 15 C -0.462 4.462 16 H 0.079 0.921 17 C -0.207 4.207 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.179 1.179 21 H -0.196 1.196 22 H -0.156 1.156 23 C -0.185 4.185 24 C -0.015 4.015 25 O -0.305 6.305 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.019 7.324 14.418 25.735 hybrid contribution 1.562 -0.091 0.155 1.573 sum -18.456 7.233 14.573 24.603 Atomic orbital electron populations 1.21678 0.94554 1.01892 1.02243 1.22252 0.97579 0.96453 1.03640 1.22354 0.91759 0.94405 0.87847 0.86261 1.22131 0.96386 1.01523 0.96552 1.21273 0.84469 1.04593 0.99281 0.85486 1.24418 0.92118 0.73924 0.78708 1.90631 1.74907 1.41915 1.34286 1.86571 1.19276 1.71458 1.48503 1.22599 0.77738 1.03112 0.97687 1.20156 0.82589 0.84952 0.88753 1.90575 1.64113 1.50797 1.43695 1.41822 1.05225 1.51650 1.23077 1.19005 0.91270 1.34063 1.01903 0.92065 1.26088 0.97324 0.97213 1.00112 1.69777 1.11727 1.43275 1.31637 0.85417 0.78539 0.79853 0.78119 1.17879 1.19627 1.15596 1.22209 0.98712 1.01344 0.96250 1.22669 0.90607 0.99467 0.88746 1.87985 1.74543 1.53794 1.14187 0.92164 0.92857 0.92242 0.91197 0.89736 0.91178 0.89266 0.86912 0.86632 0.77115 0.90778 0.91223 0.89658 0.87075 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 71.98 0.71 -0.91 16 2 C -0.16 -1.91 4.74 30.60 0.15 -1.77 16 3 C 0.09 1.33 3.29 30.63 0.10 1.43 16 4 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.13 -2.22 4.24 30.69 0.13 -2.09 16 6 C -0.08 -1.58 2.41 -11.42 -0.03 -1.61 16 7 H 0.13 2.21 6.73 -2.39 -0.02 2.19 16 8 C 0.46 13.11 7.26 71.23 0.52 13.63 16 9 O -0.53 -16.39 15.72 21.96 0.35 -16.05 16 10 O -0.34 -11.72 9.69 -45.09 -0.44 -12.16 16 11 C 0.07 2.23 5.94 71.24 0.42 2.65 16 12 C 0.45 20.71 7.86 87.66 0.69 21.40 16 13 O -0.61 -34.28 16.08 15.75 0.25 -34.03 16 14 N -0.58 -27.07 5.09 -306.98 -1.56 -28.63 16 15 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 16 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 17 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 18 N -0.92 -54.50 13.96 21.66 0.30 -54.19 16 19 Si 0.96 37.84 27.74 68.60 1.90 39.74 16 20 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 23 C -0.15 -2.87 5.36 30.69 0.16 -2.71 16 24 C 0.06 0.95 6.52 72.01 0.47 1.42 16 25 O -0.39 -6.78 10.13 -148.98 -1.51 -8.29 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.86 4.97 -2.39 -0.01 0.85 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 3.29 8.13 -2.39 -0.02 3.27 16 34 H 0.12 3.30 8.13 -2.39 -0.02 3.28 16 35 H 0.39 15.17 5.76 -92.71 -0.53 14.63 16 36 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 0.94 6.23 -2.39 -0.01 0.93 16 Total: -1.00 -75.41 328.88 4.39 -71.02 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.46 Total: 29.48 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.64 Total: 13.11 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.26 Total: -82.82 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -1.35 Total: -70.52 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -75.41 4.39 -71.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780139795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.633 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds