Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99865 * 2 1 4 4 C 1.52998 * 109.47635 * 210.00483 * 3 2 1 5 5 C 1.52997 * 109.46630 * 300.00132 * 4 3 2 6 6 C 1.52999 * 109.47606 * 299.99508 * 5 4 3 7 7 C 1.50696 * 109.47581 * 179.97438 * 6 5 4 8 8 O 1.20833 * 119.99595 * 0.02562 * 7 6 5 9 9 O 1.34224 * 120.00302 * 180.02562 * 7 6 5 10 10 C 1.45206 * 117.00077 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99944 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00055 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99682 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00492 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46948 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47378 * 120.00054 * 18 16 14 21 21 H 1.48501 * 109.47174 * 239.99969 * 18 16 14 22 22 C 1.53002 * 109.46559 * 60.00222 * 6 5 4 23 23 C 1.52997 * 109.47493 * 300.00021 * 22 6 5 24 24 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47165 * 299.99292 * 1 2 3 26 26 H 1.08998 * 109.47713 * 59.99813 * 1 2 3 27 27 H 1.09003 * 109.47135 * 330.01071 * 3 2 1 28 28 H 1.09000 * 109.46861 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47244 * 59.99942 * 4 3 2 30 30 H 1.09005 * 109.47056 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47303 * 60.00510 * 5 4 3 32 32 H 1.08995 * 109.47159 * 300.00670 * 6 5 4 33 33 H 1.09000 * 109.47070 * 300.00162 * 10 9 7 34 34 H 1.09001 * 109.46626 * 60.00180 * 10 9 7 35 35 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 36 36 H 0.97002 * 120.00294 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47318 * 60.00361 * 22 6 5 38 38 H 1.09008 * 109.46908 * 179.97438 * 22 6 5 39 39 H 1.09003 * 109.47116 * 300.00464 * 23 22 6 40 40 H 1.09001 * 109.47677 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2635 -0.7213 5 6 4.2926 0.2894 -0.0001 6 6 4.5002 0.7552 1.4424 7 6 5.4195 -0.2045 2.1529 8 8 5.8635 -1.1625 1.5655 9 8 5.7450 0.0049 3.4381 10 6 6.6355 -0.9599 4.0582 11 6 6.8858 -0.5642 5.4906 12 8 6.3653 0.4332 5.9441 13 7 7.6889 -1.3179 6.2675 14 6 7.9162 -0.9582 7.5708 15 1 7.4521 -0.0706 7.9748 16 6 8.7437 -1.7355 8.3718 17 7 9.3080 -2.8157 7.8804 18 14 9.0528 -1.2458 10.1478 19 1 8.3062 0.0007 10.4546 20 1 8.5930 -2.3333 11.0484 21 1 10.5055 -1.0151 10.3519 22 6 3.1515 0.7973 2.1636 23 6 2.2176 1.7713 1.4426 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.3448 1.9994 -0.5137 28 1 3.8022 2.2592 -0.7209 29 1 3.2110 0.9316 -1.7490 30 1 5.2533 0.2591 -0.5143 31 1 3.8494 -0.7064 -0.0003 32 1 4.9434 1.7510 1.4424 33 1 6.1770 -1.9483 4.0295 34 1 7.5811 -0.9821 3.5164 35 1 8.1054 -2.1152 5.9047 36 1 9.8859 -3.3582 8.4395 37 1 2.7082 -0.1985 2.1636 38 1 3.2994 1.1287 3.1915 39 1 2.6609 2.7671 1.4426 40 1 1.2566 1.8010 1.9561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781236335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = -187.214122 kcal Electronic energy + Delta-G solvation = -22566.363466 eV Core-core repulsion = 18959.714808 eV Total energy + Delta-G solvation = -3606.648658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60041 -39.26117 -38.09093 -36.37287 -35.74420 -33.97423 -31.38065 -31.12824 -30.75872 -28.28669 -26.77685 -24.80058 -23.68009 -22.86704 -20.76397 -19.72009 -19.53295 -18.03876 -17.46423 -16.63002 -16.51139 -16.22893 -15.76527 -15.60961 -15.45825 -14.55751 -14.21358 -14.05399 -13.81688 -13.64168 -13.37349 -12.83928 -12.78343 -12.56510 -12.38592 -12.14030 -11.90896 -11.63876 -11.60684 -11.30507 -11.13680 -10.96658 -10.65275 -10.59538 -10.37710 -10.32392 -10.29679 -10.04738 -9.68915 -9.59602 -8.48768 -8.06120 -6.48076 -3.90002 2.41672 2.81088 3.13060 3.24889 3.32550 3.54356 3.76734 4.13124 4.40869 4.46453 4.61856 4.80305 4.87308 4.94393 5.02935 5.08664 5.15220 5.17340 5.21197 5.26874 5.30364 5.39750 5.49900 5.57836 5.64351 5.73967 5.75041 5.80791 5.99715 6.03151 6.10097 6.17042 6.29036 6.73830 6.97325 7.49733 7.91829 8.03040 8.51173 9.09297 9.42011 9.92088 10.69337 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.002880 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.839915 B = 9720.246478 C = 9995.113815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.085 3.915 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.075 4.075 7 C 0.461 3.539 8 O -0.514 6.514 9 O -0.325 6.325 10 C 0.059 3.941 11 C 0.440 3.560 12 O -0.576 6.576 13 N -0.554 5.554 14 C -0.301 4.301 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.898 5.898 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.108 4.108 23 C -0.139 4.139 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 6.503 -16.901 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.027 3.973 4 C -0.151 4.151 5 C -0.137 4.137 6 C -0.095 4.095 7 C 0.304 3.696 8 O -0.403 6.403 9 O -0.240 6.240 10 C -0.018 4.018 11 C 0.224 3.776 12 O -0.460 6.460 13 N -0.192 5.192 14 C -0.430 4.430 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.145 4.145 23 C -0.176 4.176 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.641 6.575 -16.636 22.496 hybrid contribution 0.408 -0.320 0.667 0.844 sum -13.234 6.255 -15.970 21.663 Atomic orbital electron populations 1.22775 0.81499 1.02688 0.99702 1.87966 1.19170 1.27569 1.94987 1.22190 0.94844 0.84739 0.95517 1.21648 0.93800 1.00290 0.99376 1.21347 0.99912 1.00379 0.92097 1.21057 0.94834 0.98413 0.95160 1.23783 0.79701 0.85406 0.80701 1.90640 1.52301 1.30240 1.67105 1.86552 1.60630 1.51231 1.25546 1.22729 0.93570 0.91551 0.93980 1.19346 0.85098 0.86853 0.86256 1.90556 1.53315 1.27647 1.74481 1.41720 1.41474 1.24726 1.11240 1.19773 1.26920 1.10564 0.85768 0.87585 1.25312 0.96360 0.95480 1.00678 1.69623 1.31525 1.15058 1.37630 0.85747 0.78157 0.78751 0.81377 1.19093 1.20630 1.20638 1.21425 0.92415 1.01190 0.99513 1.22026 1.00263 0.99459 0.95871 0.89764 0.94096 0.94305 0.92101 0.90414 0.90810 0.91072 0.90035 0.87570 0.89654 0.89656 0.77169 0.91700 0.90647 0.90005 0.90553 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.80 9.00 -35.23 -0.32 -4.12 16 3 C 0.08 0.70 2.92 -26.73 -0.08 0.63 16 4 C -0.11 -0.93 5.66 -26.73 -0.15 -1.08 16 5 C -0.10 -1.09 4.35 -26.73 -0.12 -1.21 16 6 C -0.08 -0.92 2.63 -91.77 -0.24 -1.16 16 7 C 0.46 7.62 7.25 36.00 0.26 7.88 16 8 O -0.51 -9.44 15.73 -18.76 -0.30 -9.73 16 9 O -0.33 -6.26 9.65 -45.89 -0.44 -6.71 16 10 C 0.06 1.18 5.94 36.01 0.21 1.39 16 11 C 0.44 10.82 7.86 -10.99 -0.09 10.74 16 12 O -0.58 -16.22 16.08 -14.12 -0.23 -16.45 16 13 N -0.55 -14.26 5.29 -10.96 -0.06 -14.31 16 14 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 15 H 0.11 3.09 7.16 -52.48 -0.38 2.71 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 18 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.11 -1.25 4.99 -26.73 -0.13 -1.38 16 23 C -0.14 -1.20 5.63 -26.73 -0.15 -1.35 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 26 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 27 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.08 1.04 7.64 -51.93 -0.40 0.65 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 34 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 35 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 38 H 0.08 1.04 8.11 -51.92 -0.42 0.62 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -32.98 336.39 -6.27 -39.25 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.07 Total: 7.04 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.37 Total: 7.76 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.67 Total: -37.94 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.28 Total: -37.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.98 -6.27 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781236335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.967 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds