Wall clock time and date at job start Tue Mar 31 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99865 * 2 1 4 4 C 1.52998 * 109.47635 * 210.00483 * 3 2 1 5 5 C 1.52997 * 109.46630 * 300.00132 * 4 3 2 6 6 C 1.52999 * 109.47606 * 299.99508 * 5 4 3 7 7 C 1.50696 * 109.47581 * 179.97438 * 6 5 4 8 8 O 1.20833 * 119.99595 * 0.02562 * 7 6 5 9 9 O 1.34224 * 120.00302 * 180.02562 * 7 6 5 10 10 C 1.45206 * 117.00077 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99944 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00055 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99682 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00492 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46948 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47378 * 120.00054 * 18 16 14 21 21 H 1.48501 * 109.47174 * 239.99969 * 18 16 14 22 22 C 1.53002 * 109.46559 * 60.00222 * 6 5 4 23 23 C 1.52997 * 109.47493 * 300.00021 * 22 6 5 24 24 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47165 * 299.99292 * 1 2 3 26 26 H 1.08998 * 109.47713 * 59.99813 * 1 2 3 27 27 H 1.09003 * 109.47135 * 330.01071 * 3 2 1 28 28 H 1.09000 * 109.46861 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47244 * 59.99942 * 4 3 2 30 30 H 1.09005 * 109.47056 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47303 * 60.00510 * 5 4 3 32 32 H 1.08995 * 109.47159 * 300.00670 * 6 5 4 33 33 H 1.09000 * 109.47070 * 300.00162 * 10 9 7 34 34 H 1.09001 * 109.46626 * 60.00180 * 10 9 7 35 35 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 36 36 H 0.97002 * 120.00294 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47318 * 60.00361 * 22 6 5 38 38 H 1.09008 * 109.46908 * 179.97438 * 22 6 5 39 39 H 1.09003 * 109.47116 * 300.00464 * 23 22 6 40 40 H 1.09001 * 109.47677 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2635 -0.7213 5 6 4.2926 0.2894 -0.0001 6 6 4.5002 0.7552 1.4424 7 6 5.4195 -0.2045 2.1529 8 8 5.8635 -1.1625 1.5655 9 8 5.7450 0.0049 3.4381 10 6 6.6355 -0.9599 4.0582 11 6 6.8858 -0.5642 5.4906 12 8 6.3653 0.4332 5.9441 13 7 7.6889 -1.3179 6.2675 14 6 7.9162 -0.9582 7.5708 15 1 7.4521 -0.0706 7.9748 16 6 8.7437 -1.7355 8.3718 17 7 9.3080 -2.8157 7.8804 18 14 9.0528 -1.2458 10.1478 19 1 8.3062 0.0007 10.4546 20 1 8.5930 -2.3333 11.0484 21 1 10.5055 -1.0151 10.3519 22 6 3.1515 0.7973 2.1636 23 6 2.2176 1.7713 1.4426 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.3448 1.9994 -0.5137 28 1 3.8022 2.2592 -0.7209 29 1 3.2110 0.9316 -1.7490 30 1 5.2533 0.2591 -0.5143 31 1 3.8494 -0.7064 -0.0003 32 1 4.9434 1.7510 1.4424 33 1 6.1770 -1.9483 4.0295 34 1 7.5811 -0.9821 3.5164 35 1 8.1054 -2.1152 5.9047 36 1 9.8859 -3.3582 8.4395 37 1 2.7082 -0.1985 2.1636 38 1 3.2994 1.1287 3.1915 39 1 2.6609 2.7671 1.4426 40 1 1.2566 1.8010 1.9561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781236335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:28 Heat of formation + Delta-G solvation = -208.395960 kcal Electronic energy + Delta-G solvation = -22567.281980 eV Core-core repulsion = 18959.714808 eV Total energy + Delta-G solvation = -3607.567172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89252 -40.33104 -39.80686 -37.65894 -36.78617 -36.04933 -33.43802 -31.97378 -31.59926 -29.93506 -27.37540 -26.68136 -24.81830 -23.65731 -21.87921 -21.44310 -20.58895 -20.09018 -18.82089 -17.97161 -17.76827 -17.38554 -17.01079 -16.76587 -16.43514 -16.25093 -15.80780 -15.67183 -14.86737 -14.70043 -14.57833 -14.01503 -13.93928 -13.61144 -13.53582 -13.41369 -13.19255 -13.14014 -12.94886 -12.48155 -12.39044 -12.11277 -12.07746 -11.88559 -11.79394 -11.60136 -11.55629 -11.42211 -11.07068 -10.52959 -10.34383 -10.13641 -8.53843 -6.04761 1.09057 1.33739 1.37135 1.45702 1.59103 1.84668 2.29092 2.94466 3.04838 3.11465 3.52813 3.68526 3.74997 3.95448 4.08696 4.12283 4.18290 4.18855 4.21673 4.35217 4.41475 4.55349 4.57388 4.61819 4.78522 4.84962 4.92512 4.99984 5.11211 5.18863 5.21713 5.32386 5.34706 5.37134 5.45174 5.87436 6.40234 6.43927 6.64236 7.01150 7.37718 7.91018 8.63560 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.002880 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.839915 B = 9720.246478 C = 9995.113815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.082 3.918 4 C -0.109 4.109 5 C -0.095 4.095 6 C -0.071 4.071 7 C 0.459 3.541 8 O -0.535 6.535 9 O -0.342 6.342 10 C 0.069 3.931 11 C 0.438 3.562 12 O -0.616 6.616 13 N -0.558 5.558 14 C -0.338 4.338 15 H 0.085 0.915 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 1.000 3.000 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.105 4.105 23 C -0.134 4.134 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.399 0.601 36 H 0.281 0.719 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 7.431 -17.663 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.024 3.976 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.089 4.089 7 C 0.303 3.697 8 O -0.424 6.424 9 O -0.257 6.257 10 C -0.008 4.008 11 C 0.224 3.776 12 O -0.503 6.503 13 N -0.196 5.196 14 C -0.467 4.467 15 H 0.103 0.897 16 C -0.210 4.210 17 N -0.556 5.556 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.143 4.143 23 C -0.171 4.171 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.057 7.477 -17.427 23.605 hybrid contribution 0.522 -0.654 0.863 1.202 sum -13.535 6.823 -16.564 22.452 Atomic orbital electron populations 1.22905 0.80347 1.03173 1.00705 1.87944 1.20635 1.28849 1.95116 1.22325 0.95333 0.84657 0.95262 1.21685 0.93087 1.00609 0.99249 1.21313 1.00458 1.00073 0.91399 1.21273 0.94103 0.98270 0.95301 1.24728 0.79515 0.85838 0.79573 1.90623 1.53256 1.31379 1.67181 1.86569 1.60718 1.51282 1.27156 1.22503 0.95064 0.92173 0.91098 1.20070 0.83763 0.85864 0.87882 1.90519 1.54623 1.29319 1.75846 1.41759 1.41783 1.25015 1.11014 1.19768 1.28693 1.10980 0.87212 0.89726 1.26158 0.95269 0.95063 1.04548 1.69681 1.31333 1.15408 1.39210 0.84780 0.78391 0.78416 0.76189 1.19480 1.19418 1.19378 1.21378 0.92668 1.01152 0.99071 1.22041 0.99776 0.99362 0.95957 0.89716 0.93618 0.92681 0.89561 0.88015 0.89950 0.91225 0.92487 0.85233 0.88081 0.87722 0.76615 0.90934 0.92505 0.91656 0.88612 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.41 -7.63 9.00 -148.98 -1.34 -8.97 16 3 C 0.08 1.14 2.92 30.60 0.09 1.23 16 4 C -0.11 -1.48 5.66 30.59 0.17 -1.31 16 5 C -0.09 -1.96 4.35 30.59 0.13 -1.83 16 6 C -0.07 -1.66 2.63 -11.54 -0.03 -1.69 16 7 C 0.46 15.10 7.25 71.23 0.52 15.62 16 8 O -0.53 -19.61 15.73 21.94 0.35 -19.27 16 9 O -0.34 -13.26 9.65 -45.00 -0.43 -13.69 16 10 C 0.07 2.74 5.94 71.24 0.42 3.16 16 11 C 0.44 21.99 7.86 87.66 0.69 22.68 16 12 O -0.62 -35.71 16.08 15.72 0.25 -35.46 16 13 N -0.56 -29.30 5.29 -306.98 -1.62 -30.92 16 14 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 15 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 16 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 17 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 18 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 C -0.10 -2.38 4.99 30.59 0.15 -2.22 16 23 C -0.13 -2.03 5.63 30.60 0.17 -1.86 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.53 7.87 -2.39 -0.02 0.51 16 26 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.09 0.81 7.79 -2.39 -0.02 0.79 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 31 H 0.06 1.46 7.64 -2.39 -0.02 1.44 16 32 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.10 3.69 8.13 -2.39 -0.02 3.67 16 34 H 0.10 3.75 8.13 -2.39 -0.02 3.73 16 35 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 36 H 0.28 14.02 8.31 -92.71 -0.77 13.24 16 37 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 38 H 0.06 1.68 8.11 -2.38 -0.02 1.66 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 Total: -1.00 -71.73 336.39 4.65 -67.08 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.31 Total: 28.92 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 4.83 Total: 16.89 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.34 Total: -79.89 kcal Atomic # 8 Polarization: -76.21 SS G_CDS: -1.18 Total: -77.39 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -71.73 4.65 -67.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781236335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.313 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds