Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.52368 * 2 1 4 4 O 1.20824 * 119.99444 * 120.12913 * 3 2 1 5 5 O 1.34228 * 119.99942 * 300.13009 * 3 2 1 6 6 C 1.45195 * 116.99467 * 179.97438 * 5 3 2 7 7 C 1.50709 * 109.46904 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47128 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.53175 * 109.52323 * 120.12944 * 2 1 3 20 20 C 1.53184 * 109.03858 * 62.98584 * 19 2 1 21 21 C 1.53095 * 109.16094 * 56.98080 * 20 19 2 22 22 O 1.42905 * 109.41370 * 302.39202 * 21 20 19 23 23 C 1.42899 * 114.09974 * 61.16075 * 22 21 20 24 24 H 1.08993 * 109.47634 * 59.99541 * 1 2 3 25 25 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47167 * 299.99596 * 1 2 3 27 27 H 1.09000 * 109.47430 * 60.00243 * 6 5 3 28 28 H 1.08997 * 109.47916 * 299.99873 * 6 5 3 29 29 H 0.96998 * 120.00160 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47786 * 60.00101 * 10 9 7 31 31 H 1.09006 * 109.47401 * 299.99686 * 10 9 7 32 32 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 33 33 H 1.09007 * 109.54484 * 182.85327 * 19 2 1 34 34 H 1.09002 * 109.54723 * 303.03210 * 19 2 1 35 35 H 1.09000 * 109.52007 * 176.88309 * 20 19 2 36 36 H 1.08996 * 109.51926 * 297.01160 * 20 19 2 37 37 H 1.09000 * 109.47907 * 62.37546 * 21 20 19 38 38 H 1.09004 * 109.47910 * 182.41027 * 21 20 19 39 39 H 1.08992 * 109.48080 * 178.85667 * 23 22 21 40 40 H 1.09001 * 109.47948 * 58.81820 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7305 1.8141 0.9050 5 8 1.7079 2.2479 -1.0054 6 6 2.2280 3.6019 -0.9393 7 6 1.7623 4.3783 -2.1441 8 8 1.0607 3.8432 -2.9762 9 7 2.1254 5.6672 -2.2969 10 6 1.6722 6.4220 -3.4678 11 6 2.2121 7.8273 -3.3993 12 1 2.8306 8.1282 -2.5666 13 6 1.9165 8.7289 -4.3997 14 7 1.1629 8.3626 -5.4134 15 14 2.5851 10.4710 -4.3144 16 1 2.1268 11.2358 -5.5020 17 1 2.0911 11.1310 -3.0792 18 1 4.0695 10.4311 -4.2946 19 6 2.0419 -0.7247 1.2486 20 6 1.5890 -2.1872 1.1985 21 6 2.0996 -2.8273 -0.0951 22 8 1.6122 -2.0869 -1.2160 23 6 2.0428 -0.7247 -1.2473 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 3.3175 3.5724 -0.9255 28 1 1.8662 4.0863 -0.0324 29 1 2.6862 6.0953 -1.6312 30 1 0.5827 6.4520 -3.4814 31 1 2.0337 5.9373 -4.3748 32 1 0.8154 7.4581 -5.4574 33 1 3.1307 -0.6809 1.2750 34 1 1.6360 -0.2463 2.1400 35 1 1.9955 -2.7239 2.0557 36 1 0.5002 -2.2323 1.2233 37 1 3.1895 -2.8182 -0.0995 38 1 1.7441 -3.8559 -0.1565 39 1 1.6466 -0.2386 -2.1388 40 1 3.1320 -0.6881 -1.2668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781285605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = -185.915267 kcal Electronic energy + Delta-G solvation = -22628.534090 eV Core-core repulsion = 19021.941754 eV Total energy + Delta-G solvation = -3606.592336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26470 -39.61446 -38.74934 -36.55996 -34.79991 -34.52309 -32.58403 -32.41465 -29.22047 -27.49066 -26.40828 -25.47927 -24.47996 -22.78438 -21.74715 -20.09993 -19.41620 -17.98224 -17.76891 -16.99737 -16.88276 -16.16832 -16.10427 -15.71064 -15.29010 -15.05587 -14.62640 -14.33628 -13.83499 -13.67175 -13.36877 -13.17921 -12.93799 -12.78965 -12.42244 -12.32195 -12.25469 -11.97648 -11.78830 -11.41003 -11.34063 -11.09734 -10.86126 -10.82232 -10.78986 -10.46352 -10.19247 -9.86559 -9.39015 -8.86115 -8.77511 -8.14870 -6.57319 -4.31886 1.95162 2.24918 3.02375 3.35000 3.36592 3.47150 3.55772 3.83255 4.09528 4.31229 4.37735 4.41426 4.50534 4.64121 4.71641 4.94541 5.02602 5.10739 5.16104 5.19491 5.21884 5.23773 5.31482 5.37659 5.47185 5.54227 5.55081 5.73424 5.76356 6.01029 6.20396 6.77079 6.87758 7.12068 7.12439 7.49517 7.56469 8.18415 8.29999 8.62941 8.75934 9.41590 10.82873 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.045671 B = 0.002746 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.933860 B =10193.611871 C =10498.485815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C 0.471 3.529 4 O -0.506 6.506 5 O -0.324 6.324 6 C 0.048 3.952 7 C 0.500 3.500 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.241 3.759 11 C -0.626 4.626 12 H 0.058 0.942 13 C 0.023 3.977 14 N -0.900 5.900 15 Si 1.076 2.924 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.103 4.103 20 C -0.156 4.156 21 C 0.053 3.947 22 O -0.369 6.369 23 C 0.074 3.926 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.395 0.605 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.273 0.727 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -20.051 14.352 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C 0.313 3.687 4 O -0.394 6.394 5 O -0.239 6.239 6 C -0.030 4.030 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.352 5.352 10 C 0.121 3.879 11 C -0.664 4.664 12 H 0.077 0.923 13 C -0.183 4.183 14 N -0.534 5.534 15 Si 0.903 3.097 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.140 4.140 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.287 6.287 23 C -0.003 4.003 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.023 -18.894 13.028 23.039 hybrid contribution 0.609 -0.923 1.614 1.956 sum 2.631 -19.817 14.642 24.780 Atomic orbital electron populations 1.21856 0.90478 1.03894 1.03468 1.21206 0.99497 0.88132 0.99683 1.23548 0.77354 0.88343 0.79438 1.90659 1.35460 1.77108 1.36153 1.86564 1.68778 1.22452 1.46107 1.22859 1.00393 0.80259 0.99445 1.19925 0.81949 0.83085 0.86732 1.90708 1.37521 1.69143 1.43753 1.46175 1.51782 1.10048 1.27165 1.19238 0.95223 0.90813 0.82658 1.22046 1.36789 0.96036 1.11526 0.92345 1.25899 0.95012 1.05241 0.92114 1.70768 1.30579 1.21792 1.30289 0.83437 0.75855 0.74092 0.76284 1.20504 1.21234 1.21240 1.21555 1.01755 0.94751 0.95985 1.22267 1.02668 0.95545 0.98861 1.22681 0.98345 0.95782 0.85523 1.88010 1.74022 1.21521 1.45145 1.22615 0.98841 0.82251 0.96615 0.90496 0.90160 0.92078 0.88434 0.88425 0.77145 0.96242 0.96227 0.91657 0.90714 0.90342 0.90202 0.90323 0.92935 0.88470 0.86807 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.01 37.16 0.30 -1.05 16 2 C -0.08 -0.87 0.71 -155.52 -0.11 -0.98 16 3 C 0.47 6.28 6.56 36.01 0.24 6.51 16 4 O -0.51 -7.51 15.72 -18.75 -0.29 -7.81 16 5 O -0.32 -4.97 9.59 -45.90 -0.44 -5.41 16 6 C 0.05 0.72 5.94 36.01 0.21 0.93 16 7 C 0.50 9.87 7.91 -10.98 -0.09 9.78 16 8 O -0.53 -12.73 16.50 -14.10 -0.23 -12.97 16 9 N -0.70 -14.46 5.55 -61.47 -0.34 -14.81 16 10 C 0.24 6.25 4.74 -5.19 -0.02 6.22 16 11 C -0.63 -16.92 9.28 -34.44 -0.32 -17.24 16 12 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 13 C 0.02 0.65 5.46 -17.82 -0.10 0.56 16 14 N -0.90 -26.95 13.65 55.43 0.76 -26.20 16 15 Si 1.08 24.08 29.90 -169.99 -5.08 19.00 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.10 -0.89 4.12 -26.55 -0.11 -1.00 16 20 C -0.16 -1.01 5.77 -26.59 -0.15 -1.16 16 21 C 0.05 0.38 6.84 37.21 0.25 0.63 16 22 O -0.37 -3.67 10.19 -35.23 -0.36 -4.03 16 23 C 0.07 0.76 5.47 37.21 0.20 0.96 16 24 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 25 H 0.08 0.68 6.14 -51.93 -0.32 0.36 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 28 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 30 H 0.02 0.55 8.01 -51.93 -0.42 0.14 16 31 H 0.02 0.55 8.01 -51.93 -0.42 0.14 16 32 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 33 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.50 6.63 -51.93 -0.34 0.15 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -33.51 334.57 -6.61 -40.12 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.97 Total: 2.88 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.30 Total: 4.16 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.42 Total: -41.00 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.33 Total: -30.21 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.51 -6.61 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781285605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.791 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds