Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00173 * 2 1 4 4 H 1.48502 * 109.47130 * 269.99924 * 3 2 1 5 5 H 1.48502 * 109.47118 * 30.00149 * 3 2 1 6 6 H 1.48504 * 109.47276 * 149.99881 * 3 2 1 7 7 C 1.38953 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00053 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99849 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99795 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00228 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47306 * 179.97438 * 12 10 9 14 14 C 1.34228 * 116.99926 * 180.02562 * 13 12 10 15 15 O 1.20825 * 120.00356 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99634 * 180.02562 * 14 13 12 17 17 H 1.08994 * 109.46812 * 304.99135 * 16 14 13 18 18 O 1.42905 * 109.46650 * 184.99638 * 16 14 13 19 19 C 1.52997 * 109.47376 * 64.99496 * 16 14 13 20 20 C 1.52996 * 109.46975 * 184.99777 * 19 16 14 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 16 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 0.97001 * 119.99768 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99855 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46720 * 60.00693 * 12 10 9 28 28 H 1.08995 * 109.47494 * 300.00658 * 12 10 9 29 29 H 0.96697 * 114.00004 * 299.99651 * 18 16 14 30 30 H 1.08992 * 109.47280 * 305.00312 * 19 16 14 31 31 H 1.09004 * 109.47368 * 60.00217 * 20 19 16 32 32 H 1.09001 * 109.47372 * 300.00372 * 20 19 16 33 33 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 35 35 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 36 36 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 38 38 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 8 6.0447 -3.7395 0.0017 14 6 7.3754 -3.9154 0.0023 15 8 8.1115 -2.9572 0.0019 16 6 7.9514 -5.3080 0.0024 17 1 7.5453 -5.8691 0.8440 18 8 9.3737 -5.2352 0.1204 19 6 7.5835 -6.0122 -1.3052 20 6 8.0603 -7.4651 -1.2536 21 6 7.6931 -8.1691 -2.5614 22 6 8.3671 -7.4525 -3.7331 23 6 7.8903 -5.9995 -3.7847 24 6 8.2576 -5.2956 -2.4769 25 1 -0.4850 0.8401 0.0004 26 1 3.8649 -0.3633 0.0007 27 1 5.9240 -1.8568 0.8912 28 1 5.9241 -1.8567 -0.8888 29 1 9.8034 -4.7487 -0.5963 30 1 6.5020 -5.9892 -1.4384 31 1 7.5805 -7.9756 -0.4185 32 1 9.1419 -7.4880 -1.1203 33 1 8.0324 -9.2044 -2.5244 34 1 6.6115 -8.1462 -2.6951 35 1 9.4486 -7.4754 -3.5995 36 1 8.1051 -7.9537 -4.6649 37 1 6.8088 -5.9766 -3.9184 38 1 8.3709 -5.4889 -4.6192 39 1 7.9176 -4.2606 -2.5135 40 1 9.3392 -5.3185 -2.3432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782375949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = -215.968761 kcal Electronic energy + Delta-G solvation = -22939.863733 eV Core-core repulsion = 19331.968180 eV Total energy + Delta-G solvation = -3607.895553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05732 -40.44975 -39.68807 -37.87679 -36.88775 -36.10629 -33.89036 -32.64129 -31.68141 -30.43527 -28.08257 -26.30925 -23.80426 -23.17415 -21.86777 -21.56901 -20.62928 -20.52859 -19.25979 -18.39834 -17.93864 -17.56236 -17.14919 -16.67464 -16.35588 -15.99625 -15.56948 -15.37674 -15.03715 -14.86187 -14.76510 -14.29269 -14.05776 -14.00322 -13.67192 -13.29207 -13.08637 -13.02161 -12.94445 -12.48105 -12.33373 -12.06635 -12.01994 -11.94184 -11.87869 -11.61052 -11.60706 -11.36561 -10.95622 -10.81288 -10.61762 -10.36258 -8.47951 -6.11234 0.94371 1.25239 1.30182 1.31781 1.43340 1.72879 2.18393 2.73300 3.06156 3.10127 3.48093 3.54556 3.68431 3.80855 3.89750 4.05087 4.08156 4.17321 4.23587 4.36656 4.43884 4.55645 4.59666 4.65083 4.70270 4.97703 5.09666 5.18277 5.21044 5.27053 5.28318 5.37204 5.40321 5.45432 5.58587 5.83093 6.30362 6.45471 6.58609 6.75013 7.23187 7.74709 8.68639 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.003525 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.936532 B = 7941.628509 C = 8351.430574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.448 3.552 11 O -0.607 6.607 12 C 0.065 3.935 13 O -0.340 6.340 14 C 0.432 3.568 15 O -0.524 6.524 16 C 0.134 3.866 17 H 0.151 0.849 18 O -0.531 6.531 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.123 4.123 25 H 0.283 0.717 26 H 0.393 0.607 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.391 0.609 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.097 -9.478 -5.275 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.491 6.491 12 C -0.012 4.012 13 O -0.255 6.255 14 C 0.276 3.724 15 O -0.413 6.413 16 C 0.073 3.927 17 H 0.168 0.832 18 O -0.338 6.338 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.160 4.160 25 H 0.092 0.908 26 H 0.229 0.771 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.242 0.758 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.577 -10.107 -4.747 24.295 hybrid contribution -0.401 1.668 -0.389 1.759 sum 21.176 -8.439 -5.136 23.367 Atomic orbital electron populations 1.69779 1.08063 1.29595 1.48958 1.26081 0.96454 1.02606 0.95529 0.85426 0.79541 0.76811 0.80197 1.17857 1.19610 1.15603 1.19011 0.80707 0.95373 1.51219 0.92061 1.41819 1.06142 1.06994 1.66787 1.20140 0.89252 0.84064 0.83018 1.90581 1.70882 1.32542 1.55107 1.22605 0.90799 0.81693 1.06070 1.86580 1.24873 1.30902 1.83187 1.25611 0.80249 0.95028 0.71514 1.90645 1.60600 1.43600 1.46480 1.21706 0.82106 0.86504 1.02385 0.83157 1.86626 1.15638 1.77559 1.54011 1.21817 1.01785 0.97188 0.92263 1.21483 1.02244 0.91997 0.98310 1.21560 1.00419 0.99613 0.94307 1.21534 1.00803 0.94559 0.98496 1.21494 1.00877 0.96556 0.96631 1.21650 1.01450 0.98052 0.94847 0.90774 0.77128 0.86868 0.86684 0.75753 0.90302 0.91102 0.90214 0.90523 0.92804 0.90939 0.91468 0.93081 0.91077 0.93759 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 13.96 21.66 0.30 -54.16 16 2 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 3 Si 0.96 37.79 27.74 68.60 1.90 39.70 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 7 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 9 N -0.58 -27.02 5.09 -306.99 -1.56 -28.58 16 10 C 0.45 20.67 7.86 87.65 0.69 21.36 16 11 O -0.61 -34.21 16.08 15.73 0.25 -33.96 16 12 C 0.07 2.21 5.94 71.23 0.42 2.63 16 13 O -0.34 -11.52 9.72 -45.05 -0.44 -11.96 16 14 C 0.43 12.03 6.25 71.24 0.45 12.47 16 15 O -0.52 -15.95 16.07 28.39 0.46 -15.49 16 16 C 0.13 2.76 3.25 29.85 0.10 2.85 16 17 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 18 O -0.53 -10.06 12.43 -129.95 -1.61 -11.68 16 19 C -0.11 -2.06 2.01 -10.80 -0.02 -2.08 16 20 C -0.10 -1.50 5.10 30.59 0.16 -1.34 16 21 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 22 C -0.12 -1.51 5.92 30.60 0.18 -1.33 16 23 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 24 C -0.12 -2.08 4.59 30.59 0.14 -1.94 16 25 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.39 15.14 5.76 -92.70 -0.53 14.61 16 27 H 0.11 3.29 8.13 -2.38 -0.02 3.27 16 28 H 0.12 3.27 8.13 -2.39 -0.02 3.25 16 29 H 0.39 5.82 6.94 -74.06 -0.51 5.31 16 30 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.05 7.82 -2.39 -0.02 1.03 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 0.91 7.38 -2.39 -0.02 0.89 16 40 H 0.08 1.12 6.71 -2.39 -0.02 1.10 16 Total: -1.00 -75.07 330.08 3.05 -72.02 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.04 Total: 33.02 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 3.79 Total: 11.08 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.26 Total: -82.74 kcal Atomic # 8 Polarization: -71.74 SS G_CDS: -1.34 Total: -73.09 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.70 kcal Total: -75.07 3.05 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782375949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.947 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds