Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48497 * 109.47439 * 269.99466 * 3 2 1 5 5 H 1.48496 * 109.47407 * 30.00407 * 3 2 1 6 6 H 1.48507 * 109.46676 * 149.99745 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.47478 * 54.99746 * 16 14 13 18 18 O 1.42904 * 109.47501 * 174.99885 * 16 14 13 19 19 C 1.53002 * 109.46988 * 294.99582 * 16 14 13 20 20 C 1.52999 * 109.47405 * 300.00192 * 19 16 14 21 21 C 1.52999 * 109.47590 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.46843 * 59.99601 * 21 20 19 23 23 C 1.52991 * 109.47454 * 300.00319 * 22 21 20 24 24 C 1.52997 * 109.47531 * 179.97438 * 19 16 14 25 25 H 0.97002 * 120.00138 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 28 28 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 29 29 H 0.96707 * 113.99745 * 59.99459 * 18 16 14 30 30 H 1.09001 * 109.46952 * 60.00071 * 19 16 14 31 31 H 1.09001 * 109.46967 * 299.99870 * 20 19 16 32 32 H 1.09003 * 109.46828 * 59.99564 * 20 19 16 33 33 H 1.09001 * 109.47116 * 300.00094 * 21 20 19 34 34 H 1.08997 * 109.47331 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.47111 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.47364 * 60.00338 * 22 21 20 37 37 H 1.09001 * 109.47100 * 299.99872 * 23 22 21 38 38 H 1.09003 * 109.47659 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47317 * 300.00398 * 24 19 16 40 40 H 1.09001 * 109.46833 * 60.00135 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3755 -3.9153 0.0023 15 8 8.1116 -2.9570 0.0018 16 6 7.9516 -5.3078 0.0024 17 1 7.5462 -5.8688 -0.8397 18 8 9.3740 -5.2350 -0.1144 19 6 7.5826 -6.0122 1.3095 20 6 8.1516 -5.2248 2.4915 21 6 7.7822 -5.9289 3.7986 22 6 8.3665 -7.3429 3.7991 23 6 7.7975 -8.1303 2.6172 24 6 8.1669 -7.4263 1.3094 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 -0.0004 27 1 5.9241 -1.8558 0.8906 28 1 5.9242 -1.8574 -0.8894 29 1 9.8031 -4.7485 0.6029 30 1 6.4977 -6.0678 1.3986 31 1 9.2366 -5.1692 2.4024 32 1 7.7350 -4.2176 2.4913 33 1 6.6972 -5.9841 3.8875 34 1 8.1872 -5.3677 4.6407 35 1 8.1037 -7.8443 4.7305 36 1 9.4516 -7.2877 3.7102 37 1 6.7125 -8.1855 2.7060 38 1 8.2135 -9.1378 2.6177 39 1 7.7611 -7.9870 0.4674 40 1 9.2518 -7.3710 1.2202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782375950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -193.428778 kcal Electronic energy + Delta-G solvation = -22960.166491 eV Core-core repulsion = 19353.248345 eV Total energy + Delta-G solvation = -3606.918146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91803 -39.12962 -38.26280 -36.77246 -35.83896 -34.08604 -31.89399 -31.78019 -31.01076 -28.97664 -26.99544 -24.45454 -23.06319 -22.32883 -20.83673 -19.90144 -19.67431 -18.64566 -18.10246 -17.24473 -16.70541 -16.04903 -15.69800 -15.46286 -15.08448 -14.85233 -14.44761 -14.20863 -13.99535 -13.77964 -13.18242 -12.93235 -12.69837 -12.54559 -12.42507 -12.31101 -12.21944 -11.94682 -11.56217 -11.33512 -11.28584 -11.17526 -10.72999 -10.68106 -10.66352 -10.56650 -10.26952 -10.07763 -9.92393 -9.69768 -8.69234 -8.31419 -6.41238 -3.94239 2.09996 2.51461 2.96909 3.01812 3.10548 3.52778 3.92399 4.01894 4.25771 4.28997 4.41222 4.52019 4.83116 4.86581 4.94734 5.04824 5.08792 5.14632 5.24375 5.29685 5.30633 5.37265 5.40506 5.50864 5.61843 5.64712 5.78812 5.88421 5.90442 5.94836 6.00003 6.05283 6.23972 6.42881 7.13208 7.42472 7.71056 7.98596 8.45536 8.81513 9.27702 9.63106 10.70995 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.003539 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.309750 B = 7910.633512 C = 8316.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.579 5.579 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.056 3.944 13 O -0.320 6.320 14 C 0.431 3.569 15 O -0.509 6.509 16 C 0.126 3.874 17 H 0.140 0.860 18 O -0.530 6.530 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.276 0.724 26 H 0.373 0.627 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.382 0.618 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.842 -10.396 5.127 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.232 3.768 11 O -0.438 6.438 12 C -0.021 4.021 13 O -0.235 6.235 14 C 0.273 3.727 15 O -0.398 6.398 16 C 0.065 3.935 17 H 0.157 0.843 18 O -0.337 6.337 19 C -0.135 4.135 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.144 4.144 25 H 0.086 0.914 26 H 0.206 0.794 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.232 0.768 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.287 -11.022 4.594 21.841 hybrid contribution 0.641 2.098 0.463 2.242 sum 18.928 -8.924 5.057 21.528 Atomic orbital electron populations 1.69615 1.05649 1.27782 1.48312 1.25037 0.95519 0.98058 0.97241 0.86681 0.79840 0.83874 0.79119 1.19383 1.19916 1.19389 1.19426 0.78658 0.96888 1.48714 0.85988 1.42038 1.07648 1.05705 1.66521 1.19173 0.86878 0.85156 0.85557 1.90605 1.69004 1.30682 1.53537 1.22769 0.95242 0.80594 1.03525 1.86569 1.23051 1.31215 1.82642 1.24863 0.81508 0.93786 0.72548 1.90663 1.60697 1.42760 1.45690 1.21586 0.81995 0.88623 1.01277 0.84304 1.86629 1.16187 1.77561 1.53290 1.21868 1.03042 0.95975 0.92626 1.21647 1.00761 0.98874 0.94764 1.21484 1.01522 0.95761 0.96702 1.21542 1.00276 0.95624 0.98262 1.21554 1.01334 0.98562 0.94379 1.21491 1.01397 0.93717 0.97833 0.91365 0.79402 0.89516 0.89430 0.76841 0.88206 0.91658 0.91951 0.91423 0.91854 0.92052 0.92075 0.91648 0.91876 0.91437 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.96 55.50 0.77 -24.23 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.58 -13.65 5.09 -10.96 -0.06 -13.71 16 10 C 0.45 10.26 7.86 -10.99 -0.09 10.17 16 11 O -0.56 -15.07 16.08 -14.12 -0.23 -15.30 16 12 C 0.06 1.00 5.94 36.01 0.21 1.22 16 13 O -0.32 -5.55 9.75 -45.89 -0.45 -6.00 16 14 C 0.43 6.31 6.01 36.00 0.22 6.53 16 15 O -0.51 -8.31 16.07 -25.47 -0.41 -8.72 16 16 C 0.13 1.40 3.30 -27.88 -0.09 1.31 16 17 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 18 O -0.53 -5.67 12.28 -55.14 -0.68 -6.34 16 19 C -0.12 -1.13 2.06 -90.62 -0.19 -1.32 16 20 C -0.12 -1.16 4.65 -26.73 -0.12 -1.28 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 22 C -0.12 -0.89 5.92 -26.74 -0.16 -1.05 16 23 C -0.12 -0.92 5.92 -26.71 -0.16 -1.08 16 24 C -0.11 -0.87 5.06 -26.71 -0.14 -1.00 16 25 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 27 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 28 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.38 3.33 7.08 45.56 0.32 3.65 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.52 6.78 -51.93 -0.35 0.17 16 32 H 0.06 0.70 7.22 -51.93 -0.37 0.32 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -32.91 329.78 -6.95 -39.85 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.24 Total: 10.54 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.92 Total: 4.69 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.72 Total: -37.94 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.76 Total: -36.36 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.91 -6.95 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782375950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.575 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds