Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48497 * 109.47439 * 269.99466 * 3 2 1 5 5 H 1.48496 * 109.47407 * 30.00407 * 3 2 1 6 6 H 1.48507 * 109.46676 * 149.99745 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.47478 * 54.99746 * 16 14 13 18 18 O 1.42904 * 109.47501 * 174.99885 * 16 14 13 19 19 C 1.53002 * 109.46988 * 294.99582 * 16 14 13 20 20 C 1.52999 * 109.47405 * 300.00192 * 19 16 14 21 21 C 1.52999 * 109.47590 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.46843 * 59.99601 * 21 20 19 23 23 C 1.52991 * 109.47454 * 300.00319 * 22 21 20 24 24 C 1.52997 * 109.47531 * 179.97438 * 19 16 14 25 25 H 0.97002 * 120.00138 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 28 28 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 29 29 H 0.96707 * 113.99745 * 59.99459 * 18 16 14 30 30 H 1.09001 * 109.46952 * 60.00071 * 19 16 14 31 31 H 1.09001 * 109.46967 * 299.99870 * 20 19 16 32 32 H 1.09003 * 109.46828 * 59.99564 * 20 19 16 33 33 H 1.09001 * 109.47116 * 300.00094 * 21 20 19 34 34 H 1.08997 * 109.47331 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.47111 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.47364 * 60.00338 * 22 21 20 37 37 H 1.09001 * 109.47100 * 299.99872 * 23 22 21 38 38 H 1.09003 * 109.47659 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47317 * 300.00398 * 24 19 16 40 40 H 1.09001 * 109.46833 * 60.00135 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3755 -3.9153 0.0023 15 8 8.1116 -2.9570 0.0018 16 6 7.9516 -5.3078 0.0024 17 1 7.5462 -5.8688 -0.8397 18 8 9.3740 -5.2350 -0.1144 19 6 7.5826 -6.0122 1.3095 20 6 8.1516 -5.2248 2.4915 21 6 7.7822 -5.9289 3.7986 22 6 8.3665 -7.3429 3.7991 23 6 7.7975 -8.1303 2.6172 24 6 8.1669 -7.4263 1.3094 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 -0.0004 27 1 5.9241 -1.8558 0.8906 28 1 5.9242 -1.8574 -0.8894 29 1 9.8031 -4.7485 0.6029 30 1 6.4977 -6.0678 1.3986 31 1 9.2366 -5.1692 2.4024 32 1 7.7350 -4.2176 2.4913 33 1 6.6972 -5.9841 3.8875 34 1 8.1872 -5.3677 4.6407 35 1 8.1037 -7.8443 4.7305 36 1 9.4516 -7.2877 3.7102 37 1 6.7125 -8.1855 2.7060 38 1 8.2135 -9.1378 2.6177 39 1 7.7611 -7.9870 0.4674 40 1 9.2518 -7.3710 1.2202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782375950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = -216.096868 kcal Electronic energy + Delta-G solvation = -22961.149453 eV Core-core repulsion = 19353.248345 eV Total energy + Delta-G solvation = -3607.901108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06170 -40.44701 -39.67699 -37.87304 -36.88465 -36.10605 -33.88948 -32.64310 -31.68354 -30.43098 -28.07232 -26.30945 -23.82713 -23.16033 -21.86053 -21.56892 -20.62954 -20.52919 -19.25269 -18.38840 -17.94668 -17.56223 -17.13501 -16.67354 -16.38082 -15.99243 -15.57108 -15.35897 -15.03942 -14.85533 -14.76090 -14.29166 -14.04858 -14.00555 -13.70139 -13.28488 -13.08518 -13.02419 -12.95468 -12.48082 -12.31037 -12.06882 -12.02019 -11.94782 -11.89604 -11.61222 -11.58324 -11.36479 -10.95407 -10.82002 -10.61834 -10.36240 -8.47940 -6.11248 0.94869 1.25375 1.30057 1.31927 1.43280 1.72866 2.18360 2.73353 3.06231 3.10293 3.48077 3.54437 3.68486 3.80966 3.89755 4.04946 4.08159 4.16608 4.23434 4.36897 4.44197 4.55373 4.59174 4.64604 4.70090 4.97610 5.09384 5.18596 5.21036 5.27155 5.28287 5.37169 5.40410 5.45448 5.58721 5.83053 6.30785 6.45555 6.58934 6.75000 7.23176 7.74697 8.68630 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.003539 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.309750 B = 7910.633512 C = 8316.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.448 3.552 11 O -0.606 6.606 12 C 0.066 3.934 13 O -0.340 6.340 14 C 0.433 3.567 15 O -0.524 6.524 16 C 0.134 3.866 17 H 0.151 0.849 18 O -0.530 6.530 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.102 4.102 25 H 0.283 0.717 26 H 0.393 0.607 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.391 0.609 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.111 -9.413 5.359 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.491 6.491 12 C -0.012 4.012 13 O -0.255 6.255 14 C 0.276 3.724 15 O -0.413 6.413 16 C 0.073 3.927 17 H 0.168 0.832 18 O -0.338 6.338 19 C -0.130 4.130 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.139 4.139 25 H 0.092 0.908 26 H 0.229 0.771 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.242 0.758 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.591 -10.043 4.833 24.298 hybrid contribution -0.408 1.675 0.396 1.769 sum 21.183 -8.368 5.229 23.368 Atomic orbital electron populations 1.69781 1.08058 1.29594 1.48969 1.26080 0.96454 1.02601 0.95532 0.85426 0.79552 0.76823 0.80179 1.17932 1.19577 1.15570 1.19010 0.80708 0.95374 1.51207 0.92057 1.41816 1.06141 1.06993 1.66791 1.20144 0.89251 0.84064 0.83013 1.90582 1.70885 1.32535 1.55103 1.22605 0.90797 0.81705 1.06054 1.86581 1.24883 1.30887 1.83193 1.25596 0.80247 0.95027 0.71482 1.90648 1.60600 1.43588 1.46513 1.21700 0.82124 0.86517 1.02375 0.83157 1.86629 1.15618 1.77554 1.53958 1.21818 1.01988 0.97081 0.92131 1.21650 1.01703 0.97672 0.94931 1.21491 1.00646 0.96826 0.96603 1.21530 1.00781 0.94588 0.98477 1.21567 1.00792 0.99310 0.94206 1.21475 1.01736 0.92419 0.98308 0.90775 0.77133 0.86805 0.86776 0.75773 0.90176 0.89824 0.94006 0.93056 0.91200 0.91455 0.90960 0.92741 0.90492 0.91044 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.47 13.96 21.66 0.30 -54.16 16 2 C -0.01 -0.36 5.50 84.92 0.47 0.11 16 3 Si 0.96 37.81 27.74 68.60 1.90 39.71 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.23 -7.73 6.52 99.48 0.65 -7.09 16 7 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 9 N -0.58 -27.02 5.09 -306.98 -1.56 -28.59 16 10 C 0.45 20.67 7.86 87.66 0.69 21.36 16 11 O -0.61 -34.21 16.08 15.72 0.25 -33.96 16 12 C 0.07 2.21 5.94 71.24 0.42 2.64 16 13 O -0.34 -11.52 9.75 -45.00 -0.44 -11.95 16 14 C 0.43 12.02 6.01 71.23 0.43 12.45 16 15 O -0.52 -15.94 16.07 28.36 0.46 -15.48 16 16 C 0.13 2.74 3.30 29.85 0.10 2.84 16 17 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 18 O -0.53 -9.99 12.28 -129.95 -1.60 -11.58 16 19 C -0.11 -2.05 2.06 -10.79 -0.02 -2.07 16 20 C -0.12 -2.13 4.65 30.59 0.14 -1.99 16 21 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 22 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 23 C -0.12 -1.65 5.92 30.61 0.18 -1.47 16 24 C -0.10 -1.46 5.06 30.61 0.15 -1.31 16 25 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 27 H 0.11 3.26 8.13 -2.39 -0.02 3.24 16 28 H 0.11 3.30 8.13 -2.39 -0.02 3.28 16 29 H 0.39 5.76 7.08 -74.05 -0.52 5.24 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.14 6.78 -2.39 -0.02 1.12 16 32 H 0.04 0.90 7.22 -2.39 -0.02 0.88 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.03 7.68 -2.39 -0.02 1.01 16 Total: -1.00 -75.08 329.78 3.04 -72.04 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.05 Total: 32.94 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 3.78 Total: 11.04 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -1.26 Total: -82.75 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -1.33 Total: -72.98 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Total: -75.08 3.04 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782375950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.060 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds