Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47238 * 2 1 4 4 C 1.46500 * 119.99783 * 269.99910 * 3 2 1 5 5 C 1.50699 * 109.47418 * 269.99617 * 4 3 2 6 6 H 1.07999 * 119.99801 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00171 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99942 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47182 * 89.99846 * 9 7 5 11 11 H 1.48500 * 109.46999 * 210.00164 * 9 7 5 12 12 H 1.48502 * 109.46869 * 329.99293 * 9 7 5 13 13 C 1.34776 * 120.00252 * 90.00247 * 3 2 1 14 14 O 1.21275 * 120.00520 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99401 * 359.97438 * 13 3 2 16 16 O 1.45208 * 109.46580 * 180.02562 * 15 13 3 17 17 C 1.34236 * 116.99488 * 180.02562 * 16 15 13 18 18 O 1.20816 * 120.00230 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99596 * 179.97438 * 17 16 15 20 20 C 1.52996 * 113.08199 * 311.90460 * 19 17 16 21 21 C 1.54038 * 113.81818 * 83.81045 * 19 17 16 22 22 O 1.44178 * 85.51698 * 136.80343 * 21 19 17 23 23 C 1.44176 * 93.34170 * 335.80761 * 22 21 19 24 24 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47380 * 300.00098 * 1 2 3 26 26 H 1.08997 * 109.47075 * 60.00102 * 1 2 3 27 27 H 1.09003 * 109.46938 * 239.99726 * 2 1 3 28 28 H 1.09001 * 109.47422 * 120.00260 * 2 1 3 29 29 H 1.08993 * 109.47432 * 30.00401 * 4 3 2 30 30 H 1.09005 * 109.46977 * 150.00347 * 4 3 2 31 31 H 0.96997 * 120.00137 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47325 * 60.00500 * 15 13 3 33 33 H 1.08997 * 109.47272 * 299.99636 * 15 13 3 34 34 H 1.09008 * 109.47369 * 288.09416 * 20 19 17 35 35 H 1.08999 * 109.47635 * 48.09281 * 20 19 17 36 36 H 1.09005 * 109.47251 * 168.09577 * 20 19 17 37 37 H 1.08997 * 113.86481 * 250.95169 * 21 19 17 38 38 H 1.09002 * 113.86144 * 22.65328 * 21 19 17 39 39 H 1.08997 * 113.86615 * 270.04970 * 23 22 21 40 40 H 1.09002 * 113.98709 * 138.35466 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9135 2.0964 -3.4170 10 1 5.9762 0.8758 -4.2606 11 1 6.3930 3.2640 -4.1993 12 1 6.7736 1.9157 -2.2200 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9913 1.3062 2.4722 16 8 2.3055 2.1961 3.5759 17 6 2.1344 1.7122 4.8163 18 8 1.7351 0.5830 4.9746 19 6 2.4406 2.5777 6.0114 20 6 3.7986 3.2758 5.9144 21 6 1.2863 3.5157 6.4123 22 8 1.5915 3.1272 7.7668 23 6 2.1944 1.8813 7.3631 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6756 3.5175 -4.4432 32 1 2.6212 0.4186 2.5302 33 1 0.9432 1.0126 2.5298 34 1 4.5943 2.5432 6.0504 35 1 3.8981 3.7424 4.9344 36 1 3.8710 4.0390 6.6893 37 1 1.4792 4.5675 6.2010 38 1 0.3074 3.1824 6.0677 39 1 1.4927 1.0490 7.3090 40 1 3.1074 1.6348 7.9050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782391705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = -129.792314 kcal Electronic energy + Delta-G solvation = -22991.298379 eV Core-core repulsion = 19387.139717 eV Total energy + Delta-G solvation = -3604.158662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61500 -39.95228 -38.86327 -36.46048 -35.35487 -32.90083 -32.61364 -30.22439 -29.19626 -27.03353 -26.76074 -26.54058 -23.55511 -23.09926 -22.32188 -19.66626 -18.70877 -18.00394 -17.18285 -16.87208 -16.51498 -16.27048 -16.07624 -16.00526 -15.41116 -14.62169 -14.45433 -13.90890 -13.75634 -13.46284 -13.33991 -12.86696 -12.75468 -12.49460 -12.40144 -12.14467 -12.09839 -11.76153 -11.65695 -11.27466 -11.23664 -10.98574 -10.92909 -10.66880 -10.58604 -10.49626 -10.18159 -10.03982 -9.69977 -9.05111 -8.48158 -7.80194 -6.09193 -4.14287 1.91148 2.33080 3.18622 3.19954 3.27516 3.34527 3.39082 3.66632 3.78549 4.38793 4.40946 4.56250 4.67523 4.81000 4.95580 5.06594 5.13857 5.14757 5.25559 5.31086 5.39814 5.40832 5.44449 5.53928 5.60601 5.68357 5.69418 5.92574 5.95392 6.14745 6.24340 6.40215 6.94929 7.35218 7.42036 7.54823 7.86666 8.16525 8.24669 8.79819 8.94768 9.50949 10.98982 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.003767 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.460363 B = 7431.763692 C = 8092.662059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.047 3.953 16 O -0.322 6.322 17 C 0.469 3.531 18 O -0.508 6.508 19 C -0.128 4.128 20 C -0.132 4.132 21 C 0.060 3.940 22 O -0.372 6.372 23 C 0.061 3.939 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -4.620 17.300 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.030 4.030 16 O -0.237 6.237 17 C 0.312 3.688 18 O -0.396 6.396 19 C -0.129 4.129 20 C -0.189 4.189 21 C -0.017 4.017 22 O -0.290 6.290 23 C -0.016 4.016 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.479 -4.101 17.357 18.389 hybrid contribution 0.904 -0.593 -0.748 1.315 sum -3.575 -4.694 16.609 17.626 Atomic orbital electron populations 1.22231 0.96505 1.01720 1.02409 1.21512 0.93773 0.83951 1.03037 1.48214 1.63752 1.13401 1.07142 1.19333 0.96490 0.93703 0.77526 1.21423 0.96855 1.32136 1.06426 0.92397 1.24929 0.97934 0.94814 0.96334 1.69925 1.35736 1.33263 1.14334 0.86484 0.84545 0.77714 0.78611 1.20610 1.21031 1.19876 1.19685 0.79771 0.87157 0.84262 1.90715 1.44520 1.17466 1.86719 1.23019 1.02726 0.92722 0.84530 1.86581 1.77994 1.44890 1.14205 1.23573 0.74114 0.86563 0.84589 1.90652 1.42557 1.19695 1.86695 1.23955 1.00930 0.97026 0.91015 1.21653 0.91723 1.00756 1.04741 1.24034 0.96122 1.00356 0.81191 1.89722 1.80140 1.33775 1.25393 1.24115 0.99184 0.88725 0.89553 0.91869 0.93175 0.91750 0.89373 0.91790 0.94623 0.93695 0.92637 0.88636 0.88730 0.91176 0.89643 0.90284 0.87250 0.89425 0.88426 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -12.15 2.46 -175.06 -0.43 -12.58 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 10.48 7.75 -10.99 -0.09 10.40 16 14 O -0.52 -13.06 16.08 -14.10 -0.23 -13.29 16 15 C 0.05 0.75 4.50 36.01 0.16 0.91 16 16 O -0.32 -5.14 9.36 -45.92 -0.43 -5.57 16 17 C 0.47 6.35 7.06 36.01 0.25 6.60 16 18 O -0.51 -7.51 15.64 -18.74 -0.29 -7.81 16 19 C -0.13 -1.34 1.38 -154.58 -0.21 -1.56 16 20 C -0.13 -1.24 9.11 37.16 0.34 -0.90 16 21 C 0.06 0.57 8.30 37.61 0.31 0.88 16 22 O -0.37 -3.95 12.39 -35.23 -0.44 -4.38 16 23 C 0.06 0.57 8.15 37.61 0.31 0.87 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.10 1.37 7.39 -51.93 -0.38 0.98 16 33 H 0.09 1.29 7.18 -51.93 -0.37 0.92 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.08 0.93 7.84 -51.93 -0.41 0.53 16 36 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.10 0.92 7.40 -51.93 -0.38 0.54 16 40 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -33.78 342.41 -5.93 -39.71 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.97 Total: -2.17 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 0.98 Total: 9.80 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.31 Total: -38.00 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.39 Total: -31.05 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.78 -5.93 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782391705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.078 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds