Wall clock time and date at job start Tue Mar 31 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47503 * 2 1 4 4 O 1.45204 * 109.47089 * 119.99940 * 2 1 3 5 5 C 1.34231 * 116.99896 * 269.99500 * 4 2 1 6 6 O 1.20831 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00321 * 179.97438 * 5 4 2 8 8 C 1.53006 * 112.99590 * 48.17557 * 7 5 4 9 9 C 1.54028 * 113.81730 * 276.19585 * 7 5 4 10 10 O 1.44181 * 85.52020 * 223.18925 * 9 7 5 11 11 C 1.44186 * 93.33309 * 24.19304 * 10 9 7 12 12 C 1.50700 * 109.47119 * 239.99548 * 2 1 3 13 13 O 1.21284 * 120.00081 * 258.93836 * 12 2 1 14 14 N 1.34773 * 119.99656 * 78.65536 * 12 2 1 15 15 C 1.46503 * 120.00349 * 356.11605 * 14 12 2 16 16 C 1.46503 * 120.00124 * 176.11329 * 14 12 2 17 17 C 1.50694 * 109.47083 * 90.00064 * 16 14 12 18 18 H 1.08001 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99879 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00109 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47004 * 59.99875 * 21 19 17 23 23 H 1.48496 * 109.46990 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46858 * 300.00127 * 21 19 17 25 25 H 1.09006 * 109.47568 * 188.08997 * 1 2 3 26 26 H 1.09004 * 109.47001 * 308.08379 * 1 2 3 27 27 H 1.08997 * 109.47700 * 68.08599 * 1 2 3 28 28 H 1.09005 * 109.46527 * 69.66965 * 8 7 5 29 29 H 1.08989 * 109.47157 * 189.66723 * 8 7 5 30 30 H 1.08999 * 109.47155 * 309.67345 * 8 7 5 31 31 H 1.09002 * 113.86998 * 337.33546 * 9 7 5 32 32 H 1.09003 * 113.86834 * 109.04394 * 9 7 5 33 33 H 1.09001 * 113.86146 * 221.65847 * 11 10 9 34 34 H 1.08993 * 113.98415 * 89.97245 * 11 10 9 35 35 H 1.09001 * 109.46919 * 91.92576 * 15 14 12 36 36 H 1.09004 * 109.47182 * 211.92894 * 15 14 12 37 37 H 1.09004 * 109.46838 * 331.92959 * 15 14 12 38 38 H 1.08993 * 109.47579 * 210.00523 * 16 14 12 39 39 H 1.09009 * 109.46822 * 330.00126 * 16 14 12 40 40 H 0.97002 * 120.00327 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9975 1.2518 2.2506 7 6 2.7183 -0.5770 3.5495 8 6 3.9229 -1.4924 3.3212 9 6 1.6068 -1.2098 4.4078 10 8 2.2859 -0.6084 5.5285 11 6 2.9008 0.4118 4.7163 12 6 2.0323 -0.7105 -1.2304 13 8 2.4244 -1.8555 -1.1519 14 7 2.0404 -0.0754 -2.4191 15 6 1.4826 1.2745 -2.5323 16 6 2.6071 -0.7349 -3.5981 17 6 1.5278 -1.5128 -4.3059 18 1 0.5204 -1.5153 -3.9167 19 6 1.8265 -2.2213 -5.4504 20 7 3.0534 -2.2187 -5.9241 21 14 0.4885 -3.1851 -6.3282 22 1 -0.5921 -2.2587 -6.7515 23 1 1.0632 -3.8546 -7.5225 24 1 -0.0692 -4.2085 -5.4079 25 1 -0.3634 -1.0175 0.1446 26 1 -0.3633 0.6339 0.8089 27 1 -0.3634 0.3835 -0.9533 28 1 4.7928 -0.8897 3.0602 29 1 4.1300 -2.0542 4.2318 30 1 3.7039 -2.1852 2.5086 31 1 0.6155 -0.7973 4.2198 32 1 1.6223 -2.2997 4.4159 33 1 3.9428 0.6082 4.9690 34 1 2.3065 1.3206 4.6213 35 1 2.2729 2.0086 -2.3746 36 1 1.0549 1.4088 -3.5258 37 1 0.7051 1.4106 -1.7805 38 1 3.0158 0.0165 -4.2736 39 1 3.4009 -1.4146 -3.2879 40 1 3.2634 -2.7169 -6.7295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782399023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:25 Heat of formation + Delta-G solvation = -124.819646 kcal Electronic energy + Delta-G solvation = -23275.475457 eV Core-core repulsion = 19671.532426 eV Total energy + Delta-G solvation = -3603.943031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63921 -40.10058 -38.80745 -36.46868 -34.92571 -33.03388 -32.58427 -31.42903 -27.79984 -27.03490 -26.71771 -26.16662 -24.79077 -23.50304 -21.94409 -19.61971 -18.89768 -18.05819 -17.09475 -16.65951 -16.56247 -16.31041 -16.11844 -15.65173 -15.36490 -14.60862 -14.49935 -13.93218 -13.74605 -13.53953 -13.02421 -12.85035 -12.71946 -12.46323 -12.38104 -12.21817 -12.10999 -11.75753 -11.69534 -11.47815 -11.26825 -11.23408 -10.94917 -10.79583 -10.59887 -10.47402 -10.19726 -10.03818 -9.70364 -8.95460 -8.47350 -7.76933 -6.08439 -4.13596 1.91744 2.35083 3.18389 3.19925 3.29702 3.34335 3.37900 3.66300 3.80839 4.38104 4.40850 4.53459 4.65683 4.78500 4.94234 4.96430 5.04718 5.13488 5.26104 5.37112 5.39999 5.44359 5.45182 5.59084 5.60370 5.65470 5.69214 5.83548 5.94955 6.01834 6.18817 6.31292 6.94072 7.34070 7.41562 7.56915 7.86958 8.16716 8.24772 8.80343 8.94964 9.51415 10.99742 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.003623 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.425455 B = 7727.244701 C = 7920.618783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.102 0.898 4 O -0.319 6.319 5 C 0.469 3.531 6 O -0.507 6.507 7 C -0.128 4.128 8 C -0.132 4.132 9 C 0.060 3.940 10 O -0.372 6.372 11 C 0.061 3.939 12 C 0.508 3.492 13 O -0.517 6.517 14 N -0.596 5.596 15 C 0.071 3.929 16 C 0.248 3.752 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 6.780 17.719 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.120 0.880 4 O -0.234 6.234 5 C 0.311 3.689 6 O -0.395 6.395 7 C -0.129 4.129 8 C -0.189 4.189 9 C -0.017 4.017 10 O -0.290 6.290 11 C -0.016 4.016 12 C 0.292 3.708 13 O -0.392 6.392 14 N -0.330 5.330 15 C -0.072 4.072 16 C 0.129 3.871 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.030 6.377 17.805 19.021 hybrid contribution -0.800 -0.213 -0.971 1.276 sum -2.829 6.164 16.834 18.149 Atomic orbital electron populations 1.22210 0.92179 1.04123 1.03900 1.22721 0.96064 0.97398 0.82829 0.87979 1.86645 1.75973 1.41381 1.19407 1.23578 0.74193 0.85779 0.85302 1.90640 1.48340 1.16408 1.84134 1.23951 0.99930 0.99027 0.90032 1.21646 0.94309 0.98895 1.04010 1.24020 0.94781 1.00622 0.82276 1.89724 1.65358 1.44761 1.29182 1.24115 1.00631 0.92087 0.84766 1.19754 0.80322 0.87010 0.83753 1.90707 1.46692 1.16606 1.85195 1.48099 1.59270 1.16028 1.09577 1.21878 0.97977 0.83949 1.03444 1.19345 0.94628 0.92914 0.80221 1.21371 0.95800 1.30318 1.09257 0.92407 1.24935 0.95695 0.96323 0.97084 1.69918 1.18448 1.42143 1.22831 0.86540 0.81661 0.80222 0.78900 1.20223 1.21134 1.20128 0.90548 0.91272 0.89366 0.91152 0.90319 0.89657 0.89456 0.87327 0.87944 0.88391 0.93363 0.90198 0.91993 0.94610 0.93810 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.15 37.16 0.34 -1.91 16 2 C 0.07 1.11 2.14 -27.88 -0.06 1.05 16 3 H 0.10 1.54 6.44 -51.93 -0.33 1.20 16 4 O -0.32 -5.11 9.13 -45.69 -0.42 -5.53 16 5 C 0.47 6.39 7.03 36.00 0.25 6.64 16 6 O -0.51 -7.53 15.11 -18.75 -0.28 -7.81 16 7 C -0.13 -1.35 1.38 -154.59 -0.21 -1.56 16 8 C -0.13 -1.27 9.08 37.16 0.34 -0.93 16 9 C 0.06 0.55 8.32 37.60 0.31 0.87 16 10 O -0.37 -3.91 12.39 -35.23 -0.44 -4.35 16 11 C 0.06 0.57 8.15 37.60 0.31 0.87 16 12 C 0.51 10.69 6.94 -10.99 -0.08 10.62 16 13 O -0.52 -13.18 16.23 -13.31 -0.22 -13.40 16 14 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 15 C 0.07 1.11 9.83 59.85 0.59 1.70 16 16 C 0.25 6.39 5.14 -5.19 -0.03 6.37 16 17 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.13 6.08 -51.93 -0.32 0.81 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 31 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.11 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.10 0.93 7.40 -51.93 -0.38 0.55 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 37 H 0.06 0.79 4.59 -51.93 -0.24 0.55 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.04 1.27 7.48 -51.92 -0.39 0.89 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -34.01 338.94 -5.54 -39.55 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.83 Total: -1.78 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 1.34 Total: 10.24 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.21 Total: -38.61 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.35 Total: -31.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.01 -5.54 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782399023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.270 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds