Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47503 * 2 1 4 4 O 1.45204 * 109.47089 * 119.99940 * 2 1 3 5 5 C 1.34231 * 116.99896 * 269.99500 * 4 2 1 6 6 O 1.20831 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00321 * 179.97438 * 5 4 2 8 8 C 1.53006 * 112.99590 * 48.17557 * 7 5 4 9 9 C 1.54028 * 113.81730 * 276.19585 * 7 5 4 10 10 O 1.44181 * 85.52020 * 223.18925 * 9 7 5 11 11 C 1.44186 * 93.33309 * 24.19304 * 10 9 7 12 12 C 1.50700 * 109.47119 * 239.99548 * 2 1 3 13 13 O 1.21284 * 120.00081 * 258.93836 * 12 2 1 14 14 N 1.34773 * 119.99656 * 78.65536 * 12 2 1 15 15 C 1.46503 * 120.00349 * 356.11605 * 14 12 2 16 16 C 1.46503 * 120.00124 * 176.11329 * 14 12 2 17 17 C 1.50694 * 109.47083 * 90.00064 * 16 14 12 18 18 H 1.08001 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99879 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00109 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47004 * 59.99875 * 21 19 17 23 23 H 1.48496 * 109.46990 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46858 * 300.00127 * 21 19 17 25 25 H 1.09006 * 109.47568 * 188.08997 * 1 2 3 26 26 H 1.09004 * 109.47001 * 308.08379 * 1 2 3 27 27 H 1.08997 * 109.47700 * 68.08599 * 1 2 3 28 28 H 1.09005 * 109.46527 * 69.66965 * 8 7 5 29 29 H 1.08989 * 109.47157 * 189.66723 * 8 7 5 30 30 H 1.08999 * 109.47155 * 309.67345 * 8 7 5 31 31 H 1.09002 * 113.86998 * 337.33546 * 9 7 5 32 32 H 1.09003 * 113.86834 * 109.04394 * 9 7 5 33 33 H 1.09001 * 113.86146 * 221.65847 * 11 10 9 34 34 H 1.08993 * 113.98415 * 89.97245 * 11 10 9 35 35 H 1.09001 * 109.46919 * 91.92576 * 15 14 12 36 36 H 1.09004 * 109.47182 * 211.92894 * 15 14 12 37 37 H 1.09004 * 109.46838 * 331.92959 * 15 14 12 38 38 H 1.08993 * 109.47579 * 210.00523 * 16 14 12 39 39 H 1.09009 * 109.46822 * 330.00126 * 16 14 12 40 40 H 0.97002 * 120.00327 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9975 1.2518 2.2506 7 6 2.7183 -0.5770 3.5495 8 6 3.9229 -1.4924 3.3212 9 6 1.6068 -1.2098 4.4078 10 8 2.2859 -0.6084 5.5285 11 6 2.9008 0.4118 4.7163 12 6 2.0323 -0.7105 -1.2304 13 8 2.4244 -1.8555 -1.1519 14 7 2.0404 -0.0754 -2.4191 15 6 1.4826 1.2745 -2.5323 16 6 2.6071 -0.7349 -3.5981 17 6 1.5278 -1.5128 -4.3059 18 1 0.5204 -1.5153 -3.9167 19 6 1.8265 -2.2213 -5.4504 20 7 3.0534 -2.2187 -5.9241 21 14 0.4885 -3.1851 -6.3282 22 1 -0.5921 -2.2587 -6.7515 23 1 1.0632 -3.8546 -7.5225 24 1 -0.0692 -4.2085 -5.4079 25 1 -0.3634 -1.0175 0.1446 26 1 -0.3633 0.6339 0.8089 27 1 -0.3634 0.3835 -0.9533 28 1 4.7928 -0.8897 3.0602 29 1 4.1300 -2.0542 4.2318 30 1 3.7039 -2.1852 2.5086 31 1 0.6155 -0.7973 4.2198 32 1 1.6223 -2.2997 4.4159 33 1 3.9428 0.6082 4.9690 34 1 2.3065 1.3206 4.6213 35 1 2.2729 2.0086 -2.3746 36 1 1.0549 1.4088 -3.5258 37 1 0.7051 1.4106 -1.7805 38 1 3.0158 0.0165 -4.2736 39 1 3.4009 -1.4146 -3.2879 40 1 3.2634 -2.7169 -6.7295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782399023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -147.482968 kcal Electronic energy + Delta-G solvation = -23276.458212 eV Core-core repulsion = 19671.532426 eV Total energy + Delta-G solvation = -3604.925786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58190 -41.29475 -40.23687 -37.68421 -36.69505 -34.88787 -33.71958 -32.67440 -29.68999 -27.77082 -27.62864 -27.48435 -26.16259 -25.08493 -23.36440 -20.63033 -20.43232 -19.00955 -18.70284 -18.34630 -17.66792 -17.59087 -17.10161 -16.94959 -16.63353 -16.28148 -16.11660 -15.13175 -14.84995 -14.63694 -14.41094 -14.23895 -13.81842 -13.68491 -13.58034 -13.48997 -13.35603 -13.13584 -13.08854 -12.85358 -12.63813 -12.59715 -12.50465 -12.19945 -12.01798 -11.98083 -11.74605 -11.44325 -10.82190 -10.65127 -10.62721 -9.54562 -8.23602 -6.38290 0.85617 1.19807 1.37474 1.41851 1.48642 1.60179 2.28006 2.40951 2.46067 2.88550 3.06616 3.35626 3.44153 3.64793 3.74685 3.80597 3.94914 4.23007 4.24610 4.48187 4.49124 4.55944 4.62868 4.67579 4.68862 4.70797 4.84300 4.87073 4.92515 4.96312 5.06332 5.14814 5.17387 5.24161 5.50039 5.76284 6.02452 6.42940 6.59270 6.70089 7.18491 7.34973 8.83773 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.003623 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.425455 B = 7727.244701 C = 7920.618783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 H 0.119 0.881 4 O -0.337 6.337 5 C 0.470 3.530 6 O -0.519 6.519 7 C -0.132 4.132 8 C -0.129 4.129 9 C 0.061 3.939 10 O -0.383 6.383 11 C 0.065 3.935 12 C 0.499 3.501 13 O -0.574 6.574 14 N -0.601 5.601 15 C 0.065 3.935 16 C 0.261 3.739 17 C -0.545 4.545 18 H 0.056 0.944 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.278 1.278 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.031 0.969 39 H -0.001 1.001 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 7.778 18.795 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.253 6.253 5 C 0.313 3.687 6 O -0.407 6.407 7 C -0.133 4.133 8 C -0.186 4.186 9 C -0.015 4.015 10 O -0.302 6.302 11 C -0.011 4.011 12 C 0.286 3.714 13 O -0.454 6.454 14 N -0.333 5.333 15 C -0.077 4.077 16 C 0.140 3.860 17 C -0.583 4.583 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.203 1.203 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.610 7.435 18.896 20.625 hybrid contribution -0.258 -0.483 -1.263 1.377 sum -3.868 6.952 17.633 19.345 Atomic orbital electron populations 1.22222 0.89766 1.04389 1.05436 1.22581 0.97616 0.96868 0.80925 0.86336 1.86666 1.76423 1.42291 1.19878 1.24189 0.73539 0.85669 0.85256 1.90623 1.48958 1.16871 1.84282 1.24178 1.00698 0.99856 0.88615 1.21634 0.94147 0.98599 1.04170 1.24182 0.94629 1.01550 0.81160 1.89719 1.65655 1.45141 1.29677 1.24219 1.01750 0.91566 0.83551 1.20648 0.79123 0.86570 0.85058 1.90669 1.49166 1.19298 1.86228 1.48088 1.58967 1.17815 1.08435 1.22193 0.99580 0.81301 1.04608 1.18839 0.93363 0.92161 0.81665 1.21659 0.96068 1.30904 1.09691 0.92540 1.25857 0.98059 0.97228 0.97911 1.70039 1.20437 1.42959 1.23348 0.85464 0.79004 0.78754 0.77579 1.18328 1.20416 1.20325 0.91343 0.88627 0.88460 0.90812 0.88452 0.91644 0.88707 0.85881 0.85990 0.88464 0.90951 0.90335 0.88707 0.95137 0.98331 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.15 71.98 0.66 -3.32 16 2 C 0.08 2.45 2.14 29.85 0.06 2.51 16 3 H 0.12 3.30 6.44 -2.39 -0.02 3.29 16 4 O -0.34 -10.60 9.13 -45.28 -0.41 -11.01 16 5 C 0.47 12.14 7.03 71.24 0.50 12.64 16 6 O -0.52 -14.35 15.11 21.95 0.33 -14.02 16 7 C -0.13 -2.58 1.38 -52.23 -0.07 -2.65 16 8 C -0.13 -2.35 9.08 71.98 0.65 -1.70 16 9 C 0.06 1.02 8.32 72.27 0.60 1.62 16 10 O -0.38 -7.23 12.39 -148.98 -1.85 -9.07 16 11 C 0.07 1.08 8.15 72.27 0.59 1.67 16 12 C 0.50 21.31 6.94 87.66 0.61 21.92 16 13 O -0.57 -30.56 16.23 14.99 0.24 -30.32 16 14 N -0.60 -25.40 2.86 -851.11 -2.43 -27.83 16 15 C 0.06 1.90 9.83 127.77 1.26 3.15 16 16 C 0.26 13.94 5.14 85.63 0.44 14.38 16 17 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 18 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 19 C 0.01 0.49 5.46 84.65 0.46 0.95 16 20 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 21 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.10 2.21 6.08 -2.39 -0.01 2.19 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.10 1.40 8.06 -2.39 -0.02 1.38 16 30 H 0.06 1.47 7.89 -2.39 -0.02 1.45 16 31 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.12 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.12 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.10 1.64 7.40 -2.39 -0.02 1.62 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 37 H 0.09 2.14 4.59 -2.38 -0.01 2.13 16 38 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.00 -0.09 7.48 -2.38 -0.02 -0.11 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -75.60 338.94 5.24 -70.36 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.04 Total: 10.53 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.00 Total: 20.41 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.15 Total: -83.24 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -1.68 Total: -64.42 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.60 5.24 -70.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782399023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.119 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds